data_7ZXY # _model_server_result.job_id 4cnICyDAd1j5YWjiupVYnA _model_server_result.datetime_utc '2024-11-04 22:32:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":301}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 550.856 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta,beta-caroten-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Q N N ? 9 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C40 H54 O' _chem_comp.formula_weight 550.856 _chem_comp.id ECH _chem_comp.mon_nstd_flag . _chem_comp.name beta,beta-caroten-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms echinenone # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ECH . . . CA 9 109.071 123.988 143.535 1 21.9 ? C1 ECH 301 I 1 HETATM 2 C C2 ECH . . . CA 9 107.592 124.286 143.3 1 21.9 ? C2 ECH 301 I 1 HETATM 3 C C3 ECH . . . CA 9 107.391 124.735 141.867 1 21.9 ? C3 ECH 301 I 1 HETATM 4 C C4 ECH . . . CA 9 108.069 126.076 141.667 1 21.9 ? C4 ECH 301 I 1 HETATM 5 C C5 ECH . . . CA 9 109.485 126.016 142.081 1 21.9 ? C5 ECH 301 I 1 HETATM 6 C C6 ECH . . . CA 9 109.902 125.125 143.001 1 21.9 ? C6 ECH 301 I 1 HETATM 7 C C7 ECH . . . CA 9 111.347 124.993 143.179 1 21.9 ? C7 ECH 301 I 1 HETATM 8 C C8 ECH . . . CA 9 111.969 125.659 144.157 1 21.9 ? C8 ECH 301 I 1 HETATM 9 C C9 ECH . . . CA 9 113.393 125.547 144.324 1 21.9 ? C9 ECH 301 I 1 HETATM 10 C C10 ECH . . . CA 9 113.928 125.118 145.467 1 21.9 ? C10 ECH 301 I 1 HETATM 11 C C11 ECH . . . CA 9 113.136 124.732 146.593 1 21.9 ? C11 ECH 301 I 1 HETATM 12 C C12 ECH . . . CA 9 113.698 124.697 147.794 1 21.9 ? C12 ECH 301 I 1 HETATM 13 C C13 ECH . . . CA 9 112.955 124.309 148.963 1 21.9 ? C13 ECH 301 I 1 HETATM 14 C C14 ECH . . . CA 9 113.558 124.402 150.148 1 21.9 ? C14 ECH 301 I 1 HETATM 15 C C15 ECH . . . CA 9 112.876 124.019 151.349 1 21.9 ? C15 ECH 301 I 1 HETATM 16 C C16 ECH . . . CA 9 113.479 124.162 152.523 1 21.9 ? C16 ECH 301 I 1 HETATM 17 C C17 ECH . . . CA 9 112.798 123.766 153.722 1 21.9 ? C17 ECH 301 I 1 HETATM 18 C C18 ECH . . . CA 9 113.384 123.892 154.913 1 21.9 ? C18 ECH 301 I 1 HETATM 19 C C19 ECH . . . CA 9 112.653 123.466 156.079 1 21.9 ? C19 ECH 301 I 1 HETATM 20 C C20 ECH . . . CA 9 113.254 123.391 157.261 1 21.9 ? C20 ECH 301 I 1 HETATM 21 C C21 ECH . . . CA 9 112.526 122.956 158.414 1 21.9 ? C21 ECH 301 I 1 HETATM 22 C C22 ECH . . . CA 9 113.101 122.968 159.616 1 21.9 ? C22 ECH 301 I 1 HETATM 23 C C23 ECH . . . CA 9 112.322 122.512 160.735 1 21.9 ? C23 ECH 301 I 1 HETATM 24 C C24 ECH . . . CA 9 112.729 121.442 161.414 1 21.9 ? C24 ECH 301 I 1 HETATM 25 C C25 ECH . . . CA 9 111.939 120.974 162.543 1 21.9 ? C25 ECH 301 I 1 HETATM 26 C C26 ECH . . . CA 9 110.917 120.162 162.294 1 21.9 ? C26 ECH 301 I 1 HETATM 27 C C27 ECH . . . CA 9 110.156 119.549 163.393 1 21.9 ? C27 ECH 301 I 1 HETATM 28 O O27 ECH . . . CA 9 109.111 118.962 163.209 1 21.9 ? O27 ECH 301 I 1 HETATM 29 C C28 ECH . . . CA 9 110.756 119.694 164.763 1 21.9 ? C28 ECH 301 I 1 HETATM 30 C C29 ECH . . . CA 9 111.497 121.005 164.936 1 21.9 ? C29 ECH 301 I 1 HETATM 31 C C30 ECH . . . CA 9 112.6 121.121 163.884 1 21.9 ? C30 ECH 301 I 1 HETATM 32 C C31 ECH . . . CA 9 109.457 122.711 142.808 1 21.9 ? C31 ECH 301 I 1 HETATM 33 C C32 ECH . . . CA 9 109.347 123.809 145.02 1 21.9 ? C32 ECH 301 I 1 HETATM 34 C C33 ECH . . . CA 9 110.473 126.658 141.169 1 21.9 ? C33 ECH 301 I 1 HETATM 35 C C34 ECH . . . CA 9 114.212 125.949 143.166 1 21.9 ? C34 ECH 301 I 1 HETATM 36 C C35 ECH . . . CA 9 111.56 123.819 148.783 1 21.9 ? C35 ECH 301 I 1 HETATM 37 C C36 ECH . . . CA 9 114.754 124.445 155.107 1 21.9 ? C36 ECH 301 I 1 HETATM 38 C C37 ECH . . . CA 9 114.491 123.417 159.893 1 21.9 ? C37 ECH 301 I 1 HETATM 39 C C38 ECH . . . CA 9 110.723 119.501 160.973 1 21.9 ? C38 ECH 301 I 1 HETATM 40 C C39 ECH . . . CA 9 113.622 119.992 164.021 1 21.9 ? C39 ECH 301 I 1 HETATM 41 C C40 ECH . . . CA 9 113.33 122.456 164.014 1 21.9 ? C40 ECH 301 I 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #