data_7ZXY # _model_server_result.job_id 2kA6DglAM4DeAg-GuOaQ8w _model_server_result.datetime_utc '2024-11-04 22:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":301}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 T N N ? 11 X N N ? 11 GA N N ? 11 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . LA 11 141.3 165.692 137.139 1 23.32 ? FE HEC 301 K 1 HETATM 2 C CHA HEC . . . LA 11 142.413 167.952 139.496 1 23.32 ? CHA HEC 301 K 1 HETATM 3 C CHB HEC . . . LA 11 138.217 165.66 138.653 1 23.32 ? CHB HEC 301 K 1 HETATM 4 C CHC HEC . . . LA 11 140 163.795 134.553 1 23.32 ? CHC HEC 301 K 1 HETATM 5 C CHD HEC . . . LA 11 144.318 165.735 135.575 1 23.32 ? CHD HEC 301 K 1 HETATM 6 N NA HEC . . . LA 11 140.469 166.649 138.741 1 23.32 ? NA HEC 301 K 1 HETATM 7 C C1A HEC . . . LA 11 141.12 167.495 139.62 1 23.32 ? C1A HEC 301 K 1 HETATM 8 C C2A HEC . . . LA 11 140.202 167.814 140.694 1 23.32 ? C2A HEC 301 K 1 HETATM 9 C C3A HEC . . . LA 11 139.054 167.182 140.454 1 23.32 ? C3A HEC 301 K 1 HETATM 10 C C4A HEC . . . LA 11 139.194 166.437 139.227 1 23.32 ? C4A HEC 301 K 1 HETATM 11 C CMA HEC . . . LA 11 137.784 167.222 141.322 1 23.32 ? CMA HEC 301 K 1 HETATM 12 C CAA HEC . . . LA 11 140.496 168.729 141.9 1 23.32 ? CAA HEC 301 K 1 HETATM 13 C CBA HEC . . . LA 11 141.167 167.935 143.012 1 23.32 ? CBA HEC 301 K 1 HETATM 14 C CGA HEC . . . LA 11 141.504 168.871 144.141 1 23.32 ? CGA HEC 301 K 1 HETATM 15 O O1A HEC . . . LA 11 142.045 168.401 145.172 1 23.32 ? O1A HEC 301 K 1 HETATM 16 O O2A HEC . . . LA 11 141.229 170.09 144.008 1 23.32 ? O2A HEC 301 K 1 HETATM 17 N NB HEC . . . LA 11 139.443 164.935 136.654 1 23.32 ? NB HEC 301 K 1 HETATM 18 C C1B HEC . . . LA 11 138.344 164.938 137.49 1 23.32 ? C1B HEC 301 K 1 HETATM 19 C C2B HEC . . . LA 11 137.346 164.053 136.932 1 23.32 ? C2B HEC 301 K 1 HETATM 20 C C3B HEC . . . LA 11 137.841 163.534 135.808 1 23.32 ? C3B HEC 301 K 1 HETATM 21 C C4B HEC . . . LA 11 139.164 164.081 135.606 1 23.32 ? C4B HEC 301 K 1 HETATM 22 C CMB HEC . . . LA 11 135.967 163.756 137.555 1 23.32 ? CMB HEC 301 K 1 HETATM 23 C CAB HEC . . . LA 11 137.146 162.532 134.861 1 23.32 ? CAB HEC 301 K 1 HETATM 24 C CBB HEC . . . LA 11 136.004 163.199 134.065 1 23.32 ? CBB HEC 301 K 1 HETATM 25 N NC HEC . . . LA 11 142.018 164.887 135.412 1 23.32 ? NC HEC 301 K 1 HETATM 26 C C1C HEC . . . LA 11 141.313 164.188 134.453 1 23.32 ? C1C HEC 301 K 1 HETATM 27 C C2C HEC . . . LA 11 142.162 164.024 133.292 1 23.32 ? C2C HEC 301 K 1 HETATM 28 C C3C HEC . . . LA 11 143.376 164.483 133.617 1 23.32 ? C3C HEC 301 K 1 HETATM 29 C C4C HEC . . . LA 11 143.293 165.084 134.929 1 23.32 ? C4C HEC 301 K 1 HETATM 30 C CMC HEC . . . LA 11 141.788 163.183 132.052 1 23.32 ? CMC HEC 301 K 1 HETATM 31 C CAC HEC . . . LA 11 144.658 164.477 132.758 1 23.32 ? CAC HEC 301 K 1 HETATM 32 C CBC HEC . . . LA 11 144.523 165.241 131.421 1 23.32 ? CBC HEC 301 K 1 HETATM 33 N ND HEC . . . LA 11 143.088 166.689 137.488 1 23.32 ? ND HEC 301 K 1 HETATM 34 C C1D HEC . . . LA 11 144.213 166.542 136.684 1 23.32 ? C1D HEC 301 K 1 HETATM 35 C C2D HEC . . . LA 11 145.271 167.378 137.198 1 23.32 ? C2D HEC 301 K 1 HETATM 36 C C3D HEC . . . LA 11 144.678 168.072 138.431 1 23.32 ? C3D HEC 301 K 1 HETATM 37 C C4D HEC . . . LA 11 143.32 167.584 138.527 1 23.32 ? C4D HEC 301 K 1 HETATM 38 C CMD HEC . . . LA 11 146.695 167.517 136.618 1 23.32 ? CMD HEC 301 K 1 HETATM 39 C CAD HEC . . . LA 11 145.363 169.086 139.373 1 23.32 ? CAD HEC 301 K 1 HETATM 40 C CBD HEC . . . LA 11 145.781 170.318 138.578 1 23.32 ? CBD HEC 301 K 1 HETATM 41 C CGD HEC . . . LA 11 146.366 171.345 139.508 1 23.32 ? CGD HEC 301 K 1 HETATM 42 O O1D HEC . . . LA 11 146.865 172.388 139.015 1 23.32 ? O1D HEC 301 K 1 HETATM 43 O O2D HEC . . . LA 11 146.334 171.119 140.744 1 23.32 ? O2D HEC 301 K 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #