data_7ZXY
#
_model_server_result.job_id            loaIaVe9e88GQPH40qRf-w 
_model_server_result.datetime_utc      '2025-03-06 09:31:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    7ZXY 
#
_exptl.entry_id    7ZXY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              550.856 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            beta,beta-caroten-4-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZXY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 Q N N 
? 9 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? 
covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? 
covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? 
metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
#
_chem_comp.formula           'C40 H54 O' 
_chem_comp.formula_weight    550.856 
_chem_comp.id                ECH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta,beta-caroten-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     echinenone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 ECH sing 228 n n 
C1 C32 ECH sing 229 n n 
C1 C6 ECH sing 230 n n 
C1 C31 ECH sing 231 n n 
C3 C2 ECH sing 232 n n 
C2 H2 ECH sing 233 n n 
C2 H2A ECH sing 234 n n 
C3 C4 ECH sing 235 n n 
C3 H3 ECH sing 236 n n 
C3 H3A ECH sing 237 n n 
C4 C5 ECH sing 238 n n 
C4 H4 ECH sing 239 n n 
C4 H4A ECH sing 240 n n 
C5 C33 ECH sing 241 n n 
C5 C6 ECH doub 242 n n 
C6 C7 ECH sing 243 n n 
C7 C8 ECH doub 244 e n 
C7 H7 ECH sing 245 n n 
C8 C9 ECH sing 246 n n 
C8 H8 ECH sing 247 n n 
C9 C10 ECH doub 248 e n 
C9 C34 ECH sing 249 n n 
C10 C11 ECH sing 250 n n 
C10 H10 ECH sing 251 n n 
C11 C12 ECH doub 252 e n 
C11 H11 ECH sing 253 n n 
C12 C13 ECH sing 254 n n 
C12 H12 ECH sing 255 n n 
C13 C14 ECH doub 256 e n 
C13 C35 ECH sing 257 n n 
C14 C15 ECH sing 258 n n 
C14 H14 ECH sing 259 n n 
C15 C16 ECH doub 260 e n 
C15 H15 ECH sing 261 n n 
C16 C17 ECH sing 262 n n 
C16 H16 ECH sing 263 n n 
C17 C18 ECH doub 264 e n 
C17 H17 ECH sing 265 n n 
C36 C18 ECH sing 266 n n 
C18 C19 ECH sing 267 e n 
C19 C20 ECH doub 268 n n 
C19 H19 ECH sing 269 n n 
C20 C21 ECH sing 270 n n 
C20 H20 ECH sing 271 e n 
C21 C22 ECH doub 272 n n 
C21 H21 ECH sing 273 n n 
C37 C22 ECH sing 274 e n 
C22 C23 ECH sing 275 n n 
C23 C24 ECH doub 276 n n 
C23 H23 ECH sing 277 n n 
C24 C25 ECH sing 278 n n 
C24 H24 ECH sing 279 n n 
C30 C25 ECH sing 280 n n 
C25 C26 ECH doub 281 n n 
C26 C38 ECH sing 282 n n 
C26 C27 ECH sing 283 n n 
C28 C27 ECH sing 284 n n 
C27 O27 ECH doub 285 n n 
C29 C28 ECH sing 286 n n 
C28 H28 ECH sing 287 n n 
C28 H28A ECH sing 288 n n 
C30 C29 ECH sing 289 n n 
C29 H29 ECH sing 290 n n 
C29 H29A ECH sing 291 n n 
C39 C30 ECH sing 292 n n 
C40 C30 ECH sing 293 n n 
C31 H31 ECH sing 294 n n 
C31 H31A ECH sing 295 n n 
C31 H31B ECH sing 296 n n 
C32 H32 ECH sing 297 n n 
C32 H32A ECH sing 298 n n 
C32 H32B ECH sing 299 n n 
C33 H33 ECH sing 300 n n 
C33 H33A ECH sing 301 n n 
C33 H33B ECH sing 302 n n 
C34 H34 ECH sing 303 n n 
C34 H34A ECH sing 304 n n 
C34 H34B ECH sing 305 n n 
C35 H35 ECH sing 306 n n 
C35 H35A ECH sing 307 n n 
C35 H35B ECH sing 308 n n 
C36 H36 ECH sing 309 n n 
C36 H36A ECH sing 310 n n 
C36 H36B ECH sing 311 n n 
C37 H37 ECH sing 312 n n 
C37 H37A ECH sing 313 n n 
C37 H37B ECH sing 314 n n 
C38 H38 ECH sing 315 n n 
C38 H38A ECH sing 316 n n 
C38 H38B ECH sing 317 n n 
C39 H39 ECH sing 318 n n 
C39 H39A ECH sing 319 n n 
C39 H39B ECH sing 320 n n 
C40 H40 ECH sing 321 n n 
C40 H40A ECH sing 322 n n 
C40 H40B ECH sing 323 n n 
#
_atom_sites.entry_id                     7ZXY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 9 ECH A 1 301 101 ECH ECH . 
R 10 HEM A 1 302 305 HEM HEM . 
S 10 HEM A 1 303 306 HEM HEM . 
T 11 HEC A 1 304 307 HEC HEM . 
U 12 CLA B 1 201 201 CLA CLA . 
V 13 PGV B 1 202 202 PGV PGV . 
W 13 PGV B 1 203 309 PGV PGV . 
X 11 HEC C 1 301 301 HEC HEC . 
Y 14 LFA C 1 302 102 LFA LFA . 
Z 13 PGV C 1 303 302 PGV PGV . 
AA 15 FES D 1 201 203 FES FES . 
BA 14 LFA E 1 101 103 LFA LFA . 
CA 9 ECH I 1 301 101 ECH ECH . 
DA 13 PGV I 1 302 308 PGV PGV . 
EA 10 HEM I 1 303 308 HEM HEM . 
FA 10 HEM I 1 304 309 HEM HEM . 
GA 11 HEC I 1 305 310 HEC HEM . 
HA 12 CLA J 1 201 201 CLA CLA . 
IA 13 PGV J 1 202 201 PGV PGV . 
JA 13 PGV J 1 203 310 PGV PGV . 
KA 13 PGV J 1 204 311 PGV PGV . 
LA 11 HEC K 1 301 301 HEC HEC . 
MA 15 FES L 1 201 204 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ECH . . . Q 9 117.916 97.575 97.518 1 15.04 ? C1 ECH 301 A 1 
HETATM 2 C C2 ECH . . . Q 9 118.925 96.455 97.336 1 15.04 ? C2 ECH 301 A 1 
HETATM 3 C C3 ECH . . . Q 9 120.311 96.997 97.688 1 15.04 ? C3 ECH 301 A 1 
HETATM 4 C C4 ECH . . . Q 9 120.727 98.068 96.676 1 15.04 ? C4 ECH 301 A 1 
HETATM 5 C C5 ECH . . . Q 9 119.648 99.055 96.46 1 15.04 ? C5 ECH 301 A 1 
HETATM 6 C C6 ECH . . . Q 9 118.369 98.732 96.684 1 15.04 ? C6 ECH 301 A 1 
HETATM 7 C C7 ECH . . . Q 9 117.345 99.531 96.028 1 15.04 ? C7 ECH 301 A 1 
HETATM 8 C C8 ECH . . . Q 9 117.096 99.357 94.726 1 15.04 ? C8 ECH 301 A 1 
HETATM 9 C C9 ECH . . . Q 9 116.101 100.16 94.082 1 15.04 ? C9 ECH 301 A 1 
HETATM 10 C C10 ECH . . . Q 9 115.124 99.626 93.347 1 15.04 ? C10 ECH 301 A 1 
HETATM 11 C C11 ECH . . . Q 9 114.974 98.218 93.136 1 15.04 ? C11 ECH 301 A 1 
HETATM 12 C C12 ECH . . . Q 9 114.071 97.805 92.256 1 15.04 ? C12 ECH 301 A 1 
HETATM 13 C C13 ECH . . . Q 9 113.854 96.41 91.978 1 15.04 ? C13 ECH 301 A 1 
HETATM 14 C C14 ECH . . . Q 9 113.084 96.097 90.934 1 15.04 ? C14 ECH 301 A 1 
HETATM 15 C C15 ECH . . . Q 9 112.821 94.73 90.597 1 15.04 ? C15 ECH 301 A 1 
HETATM 16 C C16 ECH . . . Q 9 112.352 94.414 89.395 1 15.04 ? C16 ECH 301 A 1 
HETATM 17 C C17 ECH . . . Q 9 112.089 93.037 89.093 1 15.04 ? C17 ECH 301 A 1 
HETATM 18 C C18 ECH . . . Q 9 111.435 92.667 87.996 1 15.04 ? C18 ECH 301 A 1 
HETATM 19 C C19 ECH . . . Q 9 111.22 91.256 87.791 1 15.04 ? C19 ECH 301 A 1 
HETATM 20 C C20 ECH . . . Q 9 110.552 90.816 86.734 1 15.04 ? C20 ECH 301 A 1 
HETATM 21 C C21 ECH . . . Q 9 110.341 89.413 86.549 1 15.04 ? C21 ECH 301 A 1 
HETATM 22 C C22 ECH . . . Q 9 109.587 88.989 85.536 1 15.04 ? C22 ECH 301 A 1 
HETATM 23 C C23 ECH . . . Q 9 109.386 87.57 85.377 1 15.04 ? C23 ECH 301 A 1 
HETATM 24 C C24 ECH . . . Q 9 110.043 86.715 86.153 1 15.04 ? C24 ECH 301 A 1 
HETATM 25 C C25 ECH . . . Q 9 109.817 85.287 85.969 1 15.04 ? C25 ECH 301 A 1 
HETATM 26 C C26 ECH . . . Q 9 109.171 84.879 84.896 1 15.04 ? C26 ECH 301 A 1 
HETATM 27 C C27 ECH . . . Q 9 107.98 84.069 85.075 1 15.04 ? C27 ECH 301 A 1 
HETATM 28 O O27 ECH . . . Q 9 107.276 83.726 84.15 1 15.04 ? O27 ECH 301 A 1 
HETATM 29 C C28 ECH . . . Q 9 107.675 83.682 86.498 1 15.04 ? C28 ECH 301 A 1 
HETATM 30 C C29 ECH . . . Q 9 108.892 83.497 87.434 1 15.04 ? C29 ECH 301 A 1 
HETATM 31 C C30 ECH . . . Q 9 110.115 84.418 87.15 1 15.04 ? C30 ECH 301 A 1 
HETATM 32 C C31 ECH . . . Q 9 117.898 97.994 98.969 1 15.04 ? C31 ECH 301 A 1 
HETATM 33 C C32 ECH . . . Q 9 116.507 97.142 97.118 1 15.04 ? C32 ECH 301 A 1 
HETATM 34 C C33 ECH . . . Q 9 120.043 100.486 96.358 1 15.04 ? C33 ECH 301 A 1 
HETATM 35 C C34 ECH . . . Q 9 116.238 101.609 94.28 1 15.04 ? C34 ECH 301 A 1 
HETATM 36 C C35 ECH . . . Q 9 114.502 95.401 92.863 1 15.04 ? C35 ECH 301 A 1 
HETATM 37 C C36 ECH . . . Q 9 110.911 93.623 86.98 1 15.04 ? C36 ECH 301 A 1 
HETATM 38 C C37 ECH . . . Q 9 108.931 89.878 84.543 1 15.04 ? C37 ECH 301 A 1 
HETATM 39 C C38 ECH . . . Q 9 109.864 84.67 83.592 1 15.04 ? C38 ECH 301 A 1 
HETATM 40 C C39 ECH . . . Q 9 111.351 83.591 86.802 1 15.04 ? C39 ECH 301 A 1 
HETATM 41 C C40 ECH . . . Q 9 110.443 85.26 88.382 1 15.04 ? C40 ECH 301 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           41 
#