data_7ZXY
#
_model_server_result.job_id            7MBgnA9_iySEOfyOdfcF8Q 
_model_server_result.datetime_utc      '2025-03-06 09:41:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":301}' 
#
_entry.id    7ZXY 
#
_exptl.entry_id    7ZXY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZXY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 T N N 
? 11 X N N 
? 11 GA N N 
? 11 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? 
covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? 
covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? 
metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 374 n n 
FE NB HEC sing 375 n n 
FE NC HEC sing 376 n n 
FE ND HEC sing 377 n n 
CHA C1A HEC doub 378 n n 
CHA C4D HEC sing 379 n n 
CHA HHA HEC sing 380 n n 
CHB C4A HEC doub 381 n n 
CHB C1B HEC sing 382 n n 
CHB HHB HEC sing 383 n n 
CHC C4B HEC doub 384 n n 
CHC C1C HEC sing 385 n n 
CHC HHC HEC sing 386 n n 
CHD C4C HEC doub 387 n n 
CHD C1D HEC sing 388 n n 
CHD HHD HEC sing 389 n n 
NA C1A HEC sing 390 n y 
NA C4A HEC sing 391 n y 
C1A C2A HEC sing 392 n y 
C2A C3A HEC doub 393 n y 
C2A CAA HEC sing 394 n n 
C3A C4A HEC sing 395 n y 
C3A CMA HEC sing 396 n n 
CMA HMA1 HEC sing 397 n n 
CMA HMA2 HEC sing 398 n n 
CMA HMA3 HEC sing 399 n n 
CAA CBA HEC sing 400 n n 
CAA HAA1 HEC sing 401 n n 
CAA HAA2 HEC sing 402 n n 
CBA CGA HEC sing 403 n n 
CBA HBA1 HEC sing 404 n n 
CBA HBA2 HEC sing 405 n n 
CGA O1A HEC doub 406 n n 
CGA O2A HEC sing 407 n n 
O2A H2A HEC sing 408 n n 
NB C1B HEC sing 409 n y 
NB C4B HEC sing 410 n y 
C1B C2B HEC doub 411 n y 
C2B C3B HEC sing 412 n y 
C2B CMB HEC sing 413 n n 
C3B C4B HEC sing 414 n y 
C3B CAB HEC doub 415 e n 
CMB HMB1 HEC sing 416 n n 
CMB HMB2 HEC sing 417 n n 
CMB HMB3 HEC sing 418 n n 
CAB CBB HEC sing 419 n n 
CAB HAB HEC sing 420 n n 
CBB HBB1 HEC sing 421 n n 
CBB HBB2 HEC sing 422 n n 
CBB HBB3 HEC sing 423 n n 
NC C1C HEC sing 424 n y 
NC C4C HEC sing 425 n y 
C1C C2C HEC doub 426 n y 
C2C C3C HEC sing 427 n y 
C2C CMC HEC sing 428 n n 
C3C C4C HEC sing 429 n y 
C3C CAC HEC doub 430 e n 
CMC HMC1 HEC sing 431 n n 
CMC HMC2 HEC sing 432 n n 
CMC HMC3 HEC sing 433 n n 
CAC CBC HEC sing 434 n n 
CAC HAC HEC sing 435 n n 
CBC HBC1 HEC sing 436 n n 
CBC HBC2 HEC sing 437 n n 
CBC HBC3 HEC sing 438 n n 
ND C1D HEC sing 439 n y 
ND C4D HEC sing 440 n y 
C1D C2D HEC doub 441 n y 
C2D C3D HEC sing 442 n y 
C2D CMD HEC sing 443 n n 
C3D C4D HEC doub 444 n y 
C3D CAD HEC sing 445 n n 
CMD HMD1 HEC sing 446 n n 
CMD HMD2 HEC sing 447 n n 
CMD HMD3 HEC sing 448 n n 
CAD CBD HEC sing 449 n n 
CAD HAD1 HEC sing 450 n n 
CAD HAD2 HEC sing 451 n n 
CBD CGD HEC sing 452 n n 
CBD HBD1 HEC sing 453 n n 
CBD HBD2 HEC sing 454 n n 
CGD O1D HEC doub 455 n n 
CGD O2D HEC sing 456 n n 
O2D H2D HEC sing 457 n n 
#
_atom_sites.entry_id                     7ZXY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 9 ECH A 1 301 101 ECH ECH . 
R 10 HEM A 1 302 305 HEM HEM . 
S 10 HEM A 1 303 306 HEM HEM . 
T 11 HEC A 1 304 307 HEC HEM . 
U 12 CLA B 1 201 201 CLA CLA . 
V 13 PGV B 1 202 202 PGV PGV . 
W 13 PGV B 1 203 309 PGV PGV . 
X 11 HEC C 1 301 301 HEC HEC . 
Y 14 LFA C 1 302 102 LFA LFA . 
Z 13 PGV C 1 303 302 PGV PGV . 
AA 15 FES D 1 201 203 FES FES . 
BA 14 LFA E 1 101 103 LFA LFA . 
CA 9 ECH I 1 301 101 ECH ECH . 
DA 13 PGV I 1 302 308 PGV PGV . 
EA 10 HEM I 1 303 308 HEM HEM . 
FA 10 HEM I 1 304 309 HEM HEM . 
GA 11 HEC I 1 305 310 HEC HEM . 
HA 12 CLA J 1 201 201 CLA CLA . 
IA 13 PGV J 1 202 201 PGV PGV . 
JA 13 PGV J 1 203 310 PGV PGV . 
KA 13 PGV J 1 204 311 PGV PGV . 
LA 11 HEC K 1 301 301 HEC HEC . 
MA 15 FES L 1 201 204 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . X 11 124.401 138.601 64.438 1 24.5 ? FE HEC 301 C 1 
HETATM 2 C CHA HEC . . . X 11 124.226 138.412 61.021 1 24.5 ? CHA HEC 301 C 1 
HETATM 3 C CHB HEC . . . X 11 126.042 135.557 64.505 1 24.5 ? CHB HEC 301 C 1 
HETATM 4 C CHC HEC . . . X 11 124.935 138.907 67.826 1 24.5 ? CHC HEC 301 C 1 
HETATM 5 C CHD HEC . . . X 11 122.915 141.685 64.421 1 24.5 ? CHD HEC 301 C 1 
HETATM 6 N NA HEC . . . X 11 125.019 137.245 63.037 1 24.5 ? NA HEC 301 C 1 
HETATM 7 C C1A HEC . . . X 11 124.835 137.361 61.672 1 24.5 ? C1A HEC 301 C 1 
HETATM 8 C C2A HEC . . . X 11 125.399 136.181 61.047 1 24.5 ? C2A HEC 301 C 1 
HETATM 9 C C3A HEC . . . X 11 125.895 135.401 62.005 1 24.5 ? C3A HEC 301 C 1 
HETATM 10 C C4A HEC . . . X 11 125.669 136.049 63.276 1 24.5 ? C4A HEC 301 C 1 
HETATM 11 C CMA HEC . . . X 11 126.59 134.042 61.799 1 24.5 ? CMA HEC 301 C 1 
HETATM 12 C CAA HEC . . . X 11 125.425 135.87 59.537 1 24.5 ? CAA HEC 301 C 1 
HETATM 13 C CBA HEC . . . X 11 124.041 135.433 59.079 1 24.5 ? CBA HEC 301 C 1 
HETATM 14 C CGA HEC . . . X 11 124.081 135.157 57.601 1 24.5 ? CGA HEC 301 C 1 
HETATM 15 O O1A HEC . . . X 11 125.11 135.486 56.958 1 24.5 ? O1A HEC 301 C 1 
HETATM 16 O O2A HEC . . . X 11 123.083 134.613 57.064 1 24.5 ? O2A HEC 301 C 1 
HETATM 17 N NB HEC . . . X 11 125.357 137.474 65.87 1 24.5 ? NB HEC 301 C 1 
HETATM 18 C C1B HEC . . . X 11 125.883 136.208 65.706 1 24.5 ? C1B HEC 301 C 1 
HETATM 19 C C2B HEC . . . X 11 126.238 135.686 67.008 1 24.5 ? C2B HEC 301 C 1 
HETATM 20 C C3B HEC . . . X 11 125.934 136.623 67.913 1 24.5 ? C3B HEC 301 C 1 
HETATM 21 C C4B HEC . . . X 11 125.371 137.754 67.22 1 24.5 ? C4B HEC 301 C 1 
HETATM 22 C CMB HEC . . . X 11 126.855 134.293 67.261 1 24.5 ? CMB HEC 301 C 1 
HETATM 23 C CAB HEC . . . X 11 126.087 136.584 69.445 1 24.5 ? CAB HEC 301 C 1 
HETATM 24 C CBB HEC . . . X 11 127.53 136.351 69.947 1 24.5 ? CBB HEC 301 C 1 
HETATM 25 N NC HEC . . . X 11 123.997 140.014 65.855 1 24.5 ? NC HEC 301 C 1 
HETATM 26 C C1C HEC . . . X 11 124.313 139.954 67.196 1 24.5 ? C1C HEC 301 C 1 
HETATM 27 C C2C HEC . . . X 11 123.98 141.221 67.806 1 24.5 ? C2C HEC 301 C 1 
HETATM 28 C C3C HEC . . . X 11 123.332 141.947 66.886 1 24.5 ? C3C HEC 301 C 1 
HETATM 29 C C4C HEC . . . X 11 123.389 141.229 65.629 1 24.5 ? C4C HEC 301 C 1 
HETATM 30 C CMC HEC . . . X 11 124.059 141.49 69.326 1 24.5 ? CMC HEC 301 C 1 
HETATM 31 C CAC HEC . . . X 11 122.707 143.349 67.056 1 24.5 ? CAC HEC 301 C 1 
HETATM 32 C CBC HEC . . . X 11 123.743 144.409 67.489 1 24.5 ? CBC HEC 301 C 1 
HETATM 33 N ND HEC . . . X 11 123.68 139.852 62.954 1 24.5 ? ND HEC 301 C 1 
HETATM 34 C C1D HEC . . . X 11 123.105 141.097 63.192 1 24.5 ? C1D HEC 301 C 1 
HETATM 35 C C2D HEC . . . X 11 122.731 141.69 61.929 1 24.5 ? C2D HEC 301 C 1 
HETATM 36 C C3D HEC . . . X 11 123.139 140.664 60.864 1 24.5 ? C3D HEC 301 C 1 
HETATM 37 C C4D HEC . . . X 11 123.721 139.56 61.594 1 24.5 ? C4D HEC 301 C 1 
HETATM 38 C CMD HEC . . . X 11 122.058 143.062 61.712 1 24.5 ? CMD HEC 301 C 1 
HETATM 39 C CAD HEC . . . X 11 122.975 140.783 59.335 1 24.5 ? CAD HEC 301 C 1 
HETATM 40 C CBD HEC . . . X 11 123.859 141.915 58.826 1 24.5 ? CBD HEC 301 C 1 
HETATM 41 C CGD HEC . . . X 11 123.698 142.047 57.336 1 24.5 ? CGD HEC 301 C 1 
HETATM 42 O O1D HEC . . . X 11 122.972 141.213 56.737 1 24.5 ? O1D HEC 301 C 1 
HETATM 43 O O2D HEC . . . X 11 124.296 142.984 56.75 1 24.5 ? O2D HEC 301 C 1 
#
_model_server_stats.io_time_ms              178 
_model_server_stats.parse_time_ms           79 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           43 
#