data_7ZXY # _model_server_result.job_id KnUNMmlM6pJnrNnur_vYgg _model_server_result.datetime_utc '2024-11-04 22:33:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":303}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 R N N ? 10 S N N ? 10 EA N N ? 10 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . S 10 106.714 100.966 106.557 1 1.24 ? CHA HEM 303 A 1 HETATM 2 C CHB HEM . . . S 10 110.498 103.999 106.688 1 1.24 ? CHB HEM 303 A 1 HETATM 3 C CHC HEM . . . S 10 107.789 107.422 104.617 1 1.24 ? CHC HEM 303 A 1 HETATM 4 C CHD HEM . . . S 10 103.91 104.556 104.908 1 1.24 ? CHD HEM 303 A 1 HETATM 5 C C1A HEM . . . S 10 107.986 101.462 106.733 1 1.24 ? C1A HEM 303 A 1 HETATM 6 C C2A HEM . . . S 10 109.141 100.727 107.205 1 1.24 ? C2A HEM 303 A 1 HETATM 7 C C3A HEM . . . S 10 110.176 101.567 107.238 1 1.24 ? C3A HEM 303 A 1 HETATM 8 C C4A HEM . . . S 10 109.722 102.866 106.795 1 1.24 ? C4A HEM 303 A 1 HETATM 9 C CMA HEM . . . S 10 111.614 101.229 107.676 1 1.24 ? CMA HEM 303 A 1 HETATM 10 C CAA HEM . . . S 10 109.172 99.234 107.594 1 1.24 ? CAA HEM 303 A 1 HETATM 11 C CBA HEM . . . S 10 108.871 98.353 106.386 1 1.24 ? CBA HEM 303 A 1 HETATM 12 C CGA HEM . . . S 10 109.773 98.699 105.232 1 1.24 ? CGA HEM 303 A 1 HETATM 13 O O1A HEM . . . S 10 110.947 99.078 105.469 1 1.24 ? O1A HEM 303 A 1 HETATM 14 O O2A HEM . . . S 10 109.325 98.579 104.067 1 1.24 ? O2A HEM 303 A 1 HETATM 15 C C1B HEM . . . S 10 110.078 105.211 106.189 1 1.24 ? C1B HEM 303 A 1 HETATM 16 C C2B HEM . . . S 10 110.831 106.444 106.212 1 1.24 ? C2B HEM 303 A 1 HETATM 17 C C3B HEM . . . S 10 110.085 107.399 105.63 1 1.24 ? C3B HEM 303 A 1 HETATM 18 C C4B HEM . . . S 10 108.834 106.786 105.242 1 1.24 ? C4B HEM 303 A 1 HETATM 19 C CMB HEM . . . S 10 112.252 106.547 106.803 1 1.24 ? CMB HEM 303 A 1 HETATM 20 C CAB HEM . . . S 10 110.382 108.899 105.383 1 1.24 ? CAB HEM 303 A 1 HETATM 21 C CBB HEM . . . S 10 111.451 109.554 105.844 1 1.24 ? CBB HEM 303 A 1 HETATM 22 C C1C HEM . . . S 10 106.545 106.881 104.39 1 1.24 ? C1C HEM 303 A 1 HETATM 23 C C2C HEM . . . S 10 105.571 107.374 103.444 1 1.24 ? C2C HEM 303 A 1 HETATM 24 C C3C HEM . . . S 10 104.489 106.577 103.517 1 1.24 ? C3C HEM 303 A 1 HETATM 25 C C4C HEM . . . S 10 104.758 105.567 104.519 1 1.24 ? C4C HEM 303 A 1 HETATM 26 C CMC HEM . . . S 10 105.831 108.603 102.547 1 1.24 ? CMC HEM 303 A 1 HETATM 27 C CAC HEM . . . S 10 103.148 106.637 102.745 1 1.24 ? CAC HEM 303 A 1 HETATM 28 C CBC HEM . . . S 10 102.796 107.621 101.913 1 1.24 ? CBC HEM 303 A 1 HETATM 29 C C1D HEM . . . S 10 104.311 103.349 105.433 1 1.24 ? C1D HEM 303 A 1 HETATM 30 C C2D HEM . . . S 10 103.456 102.255 105.842 1 1.24 ? C2D HEM 303 A 1 HETATM 31 C C3D HEM . . . S 10 104.235 101.276 106.296 1 1.24 ? C3D HEM 303 A 1 HETATM 32 C C4D HEM . . . S 10 105.61 101.701 106.19 1 1.24 ? C4D HEM 303 A 1 HETATM 33 C CMD HEM . . . S 10 101.917 102.229 105.771 1 1.24 ? CMD HEM 303 A 1 HETATM 34 C CAD HEM . . . S 10 103.766 99.912 106.831 1 1.24 ? CAD HEM 303 A 1 HETATM 35 C CBD HEM . . . S 10 103.678 98.973 105.637 1 1.24 ? CBD HEM 303 A 1 HETATM 36 C CGD HEM . . . S 10 103.708 97.549 106.106 1 1.24 ? CGD HEM 303 A 1 HETATM 37 O O1D HEM . . . S 10 103.878 97.331 107.331 1 1.24 ? O1D HEM 303 A 1 HETATM 38 O O2D HEM . . . S 10 103.567 96.638 105.252 1 1.24 ? O2D HEM 303 A 1 HETATM 39 N NA HEM . . . S 10 108.378 102.766 106.494 1 1.24 ? NA HEM 303 A 1 HETATM 40 N NB HEM . . . S 10 108.861 105.456 105.594 1 1.24 ? NB HEM 303 A 1 HETATM 41 N NC HEM . . . S 10 106.021 105.779 105.028 1 1.24 ? NC HEM 303 A 1 HETATM 42 N ND HEM . . . S 10 105.621 102.975 105.662 1 1.24 ? ND HEM 303 A 1 HETATM 43 FE FE HEM . . . S 10 107.204 104.26 105.747 1 1.24 ? FE HEM 303 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #