data_7ZXY # _model_server_result.job_id -YCEvb3NmpQOH1ip61UTCA _model_server_result.datetime_utc '2024-11-04 22:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":305}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 T N N ? 11 X N N ? 11 GA N N ? 11 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . GA 11 109.289 114.385 138.036 1 4.1 ? FE HEC 305 I 1 HETATM 2 C CHA HEC . . . GA 11 110.44 111.26 137.165 1 4.1 ? CHA HEC 305 I 1 HETATM 3 C CHB HEC . . . GA 11 108.871 113.331 141.246 1 4.1 ? CHB HEC 305 I 1 HETATM 4 C CHC HEC . . . GA 11 108.141 117.498 138.882 1 4.1 ? CHC HEC 305 I 1 HETATM 5 C CHD HEC . . . GA 11 109.37 115.305 134.739 1 4.1 ? CHD HEC 305 I 1 HETATM 6 N NA HEC . . . GA 11 109.636 112.633 139.028 1 4.1 ? NA HEC 305 I 1 HETATM 7 C C1A HEC . . . GA 11 110.037 111.437 138.467 1 4.1 ? C1A HEC 305 I 1 HETATM 8 C C2A HEC . . . GA 11 109.964 110.416 139.489 1 4.1 ? C2A HEC 305 I 1 HETATM 9 C C3A HEC . . . GA 11 109.529 110.987 140.612 1 4.1 ? C3A HEC 305 I 1 HETATM 10 C C4A HEC . . . GA 11 109.315 112.392 140.347 1 4.1 ? C4A HEC 305 I 1 HETATM 11 C CMA HEC . . . GA 11 109.294 110.279 141.961 1 4.1 ? CMA HEC 305 I 1 HETATM 12 C CAA HEC . . . GA 11 110.314 108.925 139.306 1 4.1 ? CAA HEC 305 I 1 HETATM 13 C CBA HEC . . . GA 11 109.255 108.266 138.431 1 4.1 ? CBA HEC 305 I 1 HETATM 14 C CGA HEC . . . GA 11 109.617 106.824 138.215 1 4.1 ? CGA HEC 305 I 1 HETATM 15 O O1A HEC . . . GA 11 110.666 106.39 138.75 1 4.1 ? O1A HEC 305 I 1 HETATM 16 O O2A HEC . . . GA 11 108.859 106.11 137.511 1 4.1 ? O2A HEC 305 I 1 HETATM 17 N NB HEC . . . GA 11 108.726 115.295 139.779 1 4.1 ? NB HEC 305 I 1 HETATM 18 C C1B HEC . . . GA 11 108.427 114.592 140.927 1 4.1 ? C1B HEC 305 I 1 HETATM 19 C C2B HEC . . . GA 11 107.559 115.403 141.748 1 4.1 ? C2B HEC 305 I 1 HETATM 20 C C3B HEC . . . GA 11 107.361 116.572 141.112 1 4.1 ? C3B HEC 305 I 1 HETATM 21 C C4B HEC . . . GA 11 108.085 116.516 139.853 1 4.1 ? C4B HEC 305 I 1 HETATM 22 C CMB HEC . . . GA 11 107.029 114.933 143.122 1 4.1 ? CMB HEC 305 I 1 HETATM 23 C CAB HEC . . . GA 11 106.501 117.786 141.547 1 4.1 ? CAB HEC 305 I 1 HETATM 24 C CBB HEC . . . GA 11 105.494 117.718 142.423 1 4.1 ? CBB HEC 305 I 1 HETATM 25 N NC HEC . . . GA 11 108.864 116.092 137.016 1 4.1 ? NC HEC 305 I 1 HETATM 26 C C1C HEC . . . GA 11 108.351 117.261 137.538 1 4.1 ? C1C HEC 305 I 1 HETATM 27 C C2C HEC . . . GA 11 108.083 118.165 136.433 1 4.1 ? C2C HEC 305 I 1 HETATM 28 C C3C HEC . . . GA 11 108.427 117.537 135.293 1 4.1 ? C3C HEC 305 I 1 HETATM 29 C C4C HEC . . . GA 11 108.921 116.233 135.646 1 4.1 ? C4C HEC 305 I 1 HETATM 30 C CMC HEC . . . GA 11 107.499 119.585 136.604 1 4.1 ? CMC HEC 305 I 1 HETATM 31 C CAC HEC . . . GA 11 108.376 117.98 133.81 1 4.1 ? CAC HEC 305 I 1 HETATM 32 C CBC HEC . . . GA 11 107.948 119.163 133.374 1 4.1 ? CBC HEC 305 I 1 HETATM 33 N ND HEC . . . GA 11 109.763 113.447 136.282 1 4.1 ? ND HEC 305 I 1 HETATM 34 C C1D HEC . . . GA 11 109.811 114.042 135.039 1 4.1 ? C1D HEC 305 I 1 HETATM 35 C C2D HEC . . . GA 11 110.403 113.111 134.108 1 4.1 ? C2D HEC 305 I 1 HETATM 36 C C3D HEC . . . GA 11 110.701 112.001 134.781 1 4.1 ? C3D HEC 305 I 1 HETATM 37 C C4D HEC . . . GA 11 110.301 112.184 136.157 1 4.1 ? C4D HEC 305 I 1 HETATM 38 C CMD HEC . . . GA 11 110.649 113.371 132.607 1 4.1 ? CMD HEC 305 I 1 HETATM 39 C CAD HEC . . . GA 11 111.343 110.725 134.212 1 4.1 ? CAD HEC 305 I 1 HETATM 40 C CBD HEC . . . GA 11 110.261 109.932 133.493 1 4.1 ? CBD HEC 305 I 1 HETATM 41 C CGD HEC . . . GA 11 110.725 108.514 133.347 1 4.1 ? CGD HEC 305 I 1 HETATM 42 O O1D HEC . . . GA 11 110.587 107.958 132.228 1 4.1 ? O1D HEC 305 I 1 HETATM 43 O O2D HEC . . . GA 11 111.241 107.955 134.347 1 4.1 ? O2D HEC 305 I 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #