data_7ZY3 # _model_server_result.job_id hBOcS_OutY9faV8JehUxcw _model_server_result.datetime_utc '2024-11-17 06:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7ZY3 # _exptl.entry_id 7ZY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZY3 _cell.length_a 46.2 _cell.length_b 48.3 _cell.length_c 104.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 7 1_555 A N ALA 2 A ALA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale2 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.22 ? covale ? covale3 A NZ LYS 220 A LYS 226 1_555 B C15 RET . A RET 300 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.226 ? metalc ? metalc1 A OD2 ASP 5 A ASP 11 1_555 G CA CA . A CA 713 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A OD1 ASP 5 A ASP 11 1_555 H NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc3 A OD1 ASP 9 A ASP 15 1_555 H NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc4 A O ARG 11 A ARG 17 1_555 H NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc5 A OG1 THR 14 A THR 20 1_555 H NA NA . A NA 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc6 A OD1 ASP 40 A ASP 46 1_555 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc7 A OD2 ASP 40 A ASP 46 1_555 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc8 A OD2 ASP 42 A ASP 48 1_555 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 A O LEU 234 A LEU 240 1_555 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 A OD1 ASP 236 A ASP 242 1_555 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 A O THR 237 A THR 243 1_555 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc12 M O HOH . A HOH 545 2_554 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc13 M O HOH . A HOH 547 1_555 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc14 M O HOH . A HOH 586 1_555 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc15 M O HOH . A HOH 589 2_554 G CA CA . A CA 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc16 M O HOH . A HOH 664 1_555 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc17 M O HOH . A HOH 666 1_555 I MG MG . A MG 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? # _chem_comp.formula 'C16 H34' _chem_comp.formula_weight 226.441 _chem_comp.id R16 _chem_comp.mon_nstd_flag . _chem_comp.name HEXADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 R16 sing 351 n n C27 H271 R16 sing 352 n n C27 H272 R16 sing 353 n n C27 H273 R16 sing 354 n n C28 C29 R16 sing 355 n n C28 H281 R16 sing 356 n n C28 H282 R16 sing 357 n n C29 C30 R16 sing 358 n n C29 H291 R16 sing 359 n n C29 H292 R16 sing 360 n n C30 C31 R16 sing 361 n n C30 H301 R16 sing 362 n n C30 H302 R16 sing 363 n n C31 C32 R16 sing 364 n n C31 H311 R16 sing 365 n n C31 H312 R16 sing 366 n n C32 C33 R16 sing 367 n n C32 H321 R16 sing 368 n n C32 H322 R16 sing 369 n n C33 C34 R16 sing 370 n n C33 H331 R16 sing 371 n n C33 H332 R16 sing 372 n n C34 C35 R16 sing 373 n n C34 H341 R16 sing 374 n n C34 H342 R16 sing 375 n n C35 C36 R16 sing 376 n n C35 H351 R16 sing 377 n n C35 H352 R16 sing 378 n n C36 C37 R16 sing 379 n n C36 H361 R16 sing 380 n n C36 H362 R16 sing 381 n n C37 C38 R16 sing 382 n n C37 H371 R16 sing 383 n n C37 H372 R16 sing 384 n n C38 C39 R16 sing 385 n n C38 H381 R16 sing 386 n n C38 H382 R16 sing 387 n n C39 C40 R16 sing 388 n n C39 H391 R16 sing 389 n n C39 H392 R16 sing 390 n n C40 C41 R16 sing 391 n n C40 H401 R16 sing 392 n n C40 H402 R16 sing 393 n n C41 C42 R16 sing 394 n n C41 H411 R16 sing 395 n n C41 H412 R16 sing 396 n n C42 H421 R16 sing 397 n n C42 H422 R16 sing 398 n n C42 H423 R16 sing 399 n n # _atom_sites.entry_id 7ZY3 _atom_sites.fract_transf_matrix[1][1] 0.021645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 300 300 RET RET . C 3 DD9 A 1 301 301 DD9 DD9 . D 4 R16 A 1 302 302 R16 R16 . E 5 PLM A 1 303 303 PLM PLM . F 5 PLM A 1 304 304 PLM PLM . G 6 CA A 1 713 713 CA CA . H 7 NA A 1 714 714 NA NA . I 8 MG A 1 715 715 MG MG . J 9 CL A 1 716 716 CL CL . K 9 CL A 1 718 715 CL CL . L 9 CL A 1 717 717 CL CL . M 10 HOH A 1 661 661 HOH HOH . M 10 HOH A 2 644 644 HOH HOH . M 10 HOH A 3 402 402 HOH HOH . M 10 HOH A 4 665 665 HOH HOH . M 10 HOH A 5 664 664 HOH HOH . M 10 HOH A 6 561 561 HOH HOH . M 10 HOH A 7 558 558 HOH HOH . M 10 HOH A 8 595 595 HOH HOH . M 10 HOH A 9 592 592 HOH HOH . M 10 HOH A 10 547 547 HOH HOH . M 10 HOH A 11 601 601 HOH HOH . M 10 HOH A 12 528 528 HOH HOH . M 10 HOH A 13 512 512 HOH HOH . M 10 HOH A 14 525 525 HOH HOH . M 10 HOH A 15 406 406 HOH HOH . M 10 HOH A 16 575 575 HOH HOH . M 10 HOH A 17 630 630 HOH HOH . M 10 HOH A 18 545 545 HOH HOH . M 10 HOH A 19 594 594 HOH HOH . M 10 HOH A 20 622 622 HOH HOH . M 10 HOH A 21 587 587 HOH HOH . M 10 HOH A 22 603 603 HOH HOH . M 10 HOH A 23 407 407 HOH HOH . M 10 HOH A 24 539 539 HOH HOH . M 10 HOH A 25 646 646 HOH HOH . M 10 HOH A 26 604 604 HOH HOH . M 10 HOH A 27 596 596 HOH HOH . M 10 HOH A 28 401 401 HOH HOH . M 10 HOH A 29 588 588 HOH HOH . M 10 HOH A 30 501 501 HOH HOH . M 10 HOH A 31 543 543 HOH HOH . M 10 HOH A 32 593 593 HOH HOH . M 10 HOH A 33 591 591 HOH HOH . M 10 HOH A 34 635 635 HOH HOH . M 10 HOH A 35 645 645 HOH HOH . M 10 HOH A 36 600 600 HOH HOH . M 10 HOH A 37 628 628 HOH HOH . M 10 HOH A 38 602 602 HOH HOH . M 10 HOH A 39 531 531 HOH HOH . M 10 HOH A 40 625 625 HOH HOH . M 10 HOH A 41 589 589 HOH HOH . M 10 HOH A 42 666 666 HOH HOH . M 10 HOH A 43 590 590 HOH HOH . M 10 HOH A 44 598 598 HOH HOH . M 10 HOH A 45 641 641 HOH HOH . M 10 HOH A 46 586 586 HOH HOH . M 10 HOH A 47 649 649 HOH HOH . M 10 HOH A 48 627 627 HOH HOH . M 10 HOH A 49 520 520 HOH HOH . M 10 HOH A 50 599 599 HOH HOH . M 10 HOH A 51 513 513 HOH HOH . M 10 HOH A 52 636 636 HOH HOH . M 10 HOH A 53 534 534 HOH HOH . M 10 HOH A 54 522 522 HOH HOH . M 10 HOH A 55 404 404 HOH HOH . M 10 HOH A 56 633 633 HOH HOH . M 10 HOH A 57 583 583 HOH HOH . M 10 HOH A 58 576 576 HOH HOH . M 10 HOH A 59 660 660 HOH HOH . M 10 HOH A 60 541 541 HOH HOH . M 10 HOH A 61 639 639 HOH HOH . M 10 HOH A 62 566 566 HOH HOH . M 10 HOH A 63 629 629 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 R16 . . . D 4 9.992 -10.539 -25.661 0.7 42.87 ? C27 R16 302 A 1 HETATM 2 C C28 R16 . . . D 4 11.1 -10.896 -24.671 0.7 46.12 ? C28 R16 302 A 1 HETATM 3 C C29 R16 . . . D 4 10.513 -11.612 -23.469 0.7 44.15 ? C29 R16 302 A 1 HETATM 4 C C30 R16 . . . D 4 11.259 -11.232 -22.204 0.7 49.26 ? C30 R16 302 A 1 HETATM 5 C C31 R16 . . . D 4 12.02 -12.428 -21.694 0.7 47.67 ? C31 R16 302 A 1 HETATM 6 C C32 R16 . . . D 4 12.745 -12.087 -20.393 0.7 39.96 ? C32 R16 302 A 1 HETATM 7 C C33 R16 . . . D 4 13.476 -13.311 -19.879 0.7 35.97 ? C33 R16 302 A 1 HETATM 8 C C34 R16 . . . D 4 14.372 -12.954 -18.713 0.7 44.1 ? C34 R16 302 A 1 HETATM 9 C C35 R16 . . . D 4 14.439 -14.132 -17.769 0.7 40.39 ? C35 R16 302 A 1 HETATM 10 C C36 R16 . . . D 4 13.623 -13.861 -16.532 0.7 41.71 ? C36 R16 302 A 1 HETATM 11 C C37 R16 . . . D 4 14.258 -12.762 -15.678 0.7 48.09 ? C37 R16 302 A 1 HETATM 12 C C38 R16 . . . D 4 15.413 -13.293 -14.827 0.7 45.63 ? C38 R16 302 A 1 HETATM 13 C C39 R16 . . . D 4 15.383 -12.504 -13.51 0.7 48.34 ? C39 R16 302 A 1 HETATM 14 C C40 R16 . . . D 4 16.562 -12.834 -12.617 0.7 52.85 ? C40 R16 302 A 1 HETATM 15 C C41 R16 . . . D 4 16.459 -11.972 -11.366 0.7 50.63 ? C41 R16 302 A 1 HETATM 16 C C42 R16 . . . D 4 16.93 -12.768 -10.147 0.7 53.73 ? C42 R16 302 A 1 HETATM 17 H H271 R16 . . . D 4 10.383 -10.141 -26.455 0.7 51.45 ? H271 R16 302 A 1 HETATM 18 H H272 R16 . . . D 4 9.382 -9.906 -25.25 0.7 51.45 ? H272 R16 302 A 1 HETATM 19 H H273 R16 . . . D 4 9.507 -11.342 -25.908 0.7 51.45 ? H273 R16 302 A 1 HETATM 20 H H281 R16 . . . D 4 11.541 -10.084 -24.376 0.7 55.35 ? H281 R16 302 A 1 HETATM 21 H H282 R16 . . . D 4 11.745 -11.475 -25.106 0.7 55.35 ? H282 R16 302 A 1 HETATM 22 H H291 R16 . . . D 4 10.583 -12.57 -23.604 0.7 52.98 ? H291 R16 302 A 1 HETATM 23 H H292 R16 . . . D 4 9.58 -11.366 -23.376 0.7 52.98 ? H292 R16 302 A 1 HETATM 24 H H301 R16 . . . D 4 10.625 -10.94 -21.53 0.7 59.11 ? H301 R16 302 A 1 HETATM 25 H H302 R16 . . . D 4 11.879 -10.511 -22.398 0.7 59.11 ? H302 R16 302 A 1 HETATM 26 H H311 R16 . . . D 4 12.67 -12.7 -22.36 0.7 57.21 ? H311 R16 302 A 1 HETATM 27 H H312 R16 . . . D 4 11.399 -13.155 -21.532 0.7 57.21 ? H312 R16 302 A 1 HETATM 28 H H321 R16 . . . D 4 12.1 -11.795 -19.731 0.7 47.96 ? H321 R16 302 A 1 HETATM 29 H H322 R16 . . . D 4 13.384 -11.376 -20.557 0.7 47.96 ? H322 R16 302 A 1 HETATM 30 H H331 R16 . . . D 4 14.017 -13.681 -20.594 0.7 43.17 ? H331 R16 302 A 1 HETATM 31 H H332 R16 . . . D 4 12.826 -13.971 -19.59 0.7 43.17 ? H332 R16 302 A 1 HETATM 32 H H341 R16 . . . D 4 14.009 -12.184 -18.247 0.7 52.92 ? H341 R16 302 A 1 HETATM 33 H H342 R16 . . . D 4 15.262 -12.746 -19.038 0.7 52.92 ? H342 R16 302 A 1 HETATM 34 H H351 R16 . . . D 4 15.362 -14.286 -17.515 0.7 48.48 ? H351 R16 302 A 1 HETATM 35 H H352 R16 . . . D 4 14.09 -14.919 -18.215 0.7 48.48 ? H352 R16 302 A 1 HETATM 36 H H361 R16 . . . D 4 13.565 -14.675 -16.007 0.7 50.06 ? H361 R16 302 A 1 HETATM 37 H H362 R16 . . . D 4 12.732 -13.582 -16.795 0.7 50.06 ? H362 R16 302 A 1 HETATM 38 H H371 R16 . . . D 4 13.581 -12.391 -15.091 0.7 57.72 ? H371 R16 302 A 1 HETATM 39 H H372 R16 . . . D 4 14.595 -12.066 -16.263 0.7 57.72 ? H372 R16 302 A 1 HETATM 40 H H381 R16 . . . D 4 16.257 -13.153 -15.283 0.7 54.76 ? H381 R16 302 A 1 HETATM 41 H H382 R16 . . . D 4 15.293 -14.24 -14.653 0.7 54.76 ? H382 R16 302 A 1 HETATM 42 H H391 R16 . . . D 4 14.563 -12.717 -13.038 0.7 58.01 ? H391 R16 302 A 1 HETATM 43 H H392 R16 . . . D 4 15.402 -11.556 -13.714 0.7 58.01 ? H392 R16 302 A 1 HETATM 44 H H401 R16 . . . D 4 17.391 -12.643 -13.082 0.7 63.43 ? H401 R16 302 A 1 HETATM 45 H H402 R16 . . . D 4 16.537 -13.773 -12.373 0.7 63.43 ? H402 R16 302 A 1 HETATM 46 H H411 R16 . . . D 4 15.536 -11.701 -11.237 0.7 60.76 ? H411 R16 302 A 1 HETATM 47 H H412 R16 . . . D 4 17.015 -11.184 -11.471 0.7 60.76 ? H412 R16 302 A 1 HETATM 48 H H421 R16 . . . D 4 17.827 -13.102 -10.306 0.7 64.48 ? H421 R16 302 A 1 HETATM 49 H H422 R16 . . . D 4 16.329 -13.514 -9.996 0.7 64.48 ? H422 R16 302 A 1 HETATM 50 H H423 R16 . . . D 4 16.933 -12.192 -9.366 0.7 64.48 ? H423 R16 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 50 #