data_7ZY4
#
_model_server_result.job_id            mfaeHi4cJYyLVVvwFvTgjg 
_model_server_result.datetime_utc      '2024-11-22 15:35:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    7ZY4 
#
_exptl.entry_id    7ZY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ZY4 
_cell.length_a            157.612 
_cell.length_b            157.612 
_cell.length_c            161.005 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,L 1 1 
B,D,H,I,J,K,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7ZY4 
_atom_sites.fract_transf_matrix[1][1]    0.006345 
_atom_sites.fract_transf_matrix[1][2]    0.003663 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 601 550 GOL GOL . 
F 3 GOL A 1 602 552 GOL GOL . 
G 3 GOL A 1 603 553 GOL GOL . 
H 3 GOL B 1 601 550 GOL GOL . 
I 3 GOL B 1 602 551 GOL GOL . 
J 3 GOL B 1 603 552 GOL GOL . 
K 3 GOL B 1 604 553 GOL GOL . 
L 4 HOH A 1 701 30 HOH HOH . 
L 4 HOH A 2 702 1 HOH HOH . 
L 4 HOH A 3 703 2 HOH HOH . 
L 4 HOH A 4 704 35 HOH HOH . 
L 4 HOH A 5 705 10 HOH HOH . 
L 4 HOH A 6 706 34 HOH HOH . 
L 4 HOH A 7 707 3 HOH HOH . 
L 4 HOH A 8 708 19 HOH HOH . 
L 4 HOH A 9 709 27 HOH HOH . 
L 4 HOH A 10 710 12 HOH HOH . 
L 4 HOH A 11 711 23 HOH HOH . 
L 4 HOH A 12 712 43 HOH HOH . 
L 4 HOH A 13 713 39 HOH HOH . 
L 4 HOH A 14 714 24 HOH HOH . 
L 4 HOH A 15 715 45 HOH HOH . 
L 4 HOH A 16 716 47 HOH HOH . 
L 4 HOH A 17 717 46 HOH HOH . 
M 4 HOH B 1 701 5 HOH HOH . 
M 4 HOH B 2 702 14 HOH HOH . 
M 4 HOH B 3 703 6 HOH HOH . 
M 4 HOH B 4 704 33 HOH HOH . 
M 4 HOH B 5 705 37 HOH HOH . 
M 4 HOH B 6 706 22 HOH HOH . 
M 4 HOH B 7 707 26 HOH HOH . 
M 4 HOH B 8 708 11 HOH HOH . 
M 4 HOH B 9 709 25 HOH HOH . 
M 4 HOH B 10 710 36 HOH HOH . 
M 4 HOH B 11 711 28 HOH HOH . 
M 4 HOH B 12 712 31 HOH HOH . 
M 4 HOH B 13 713 15 HOH HOH . 
M 4 HOH B 14 714 42 HOH HOH . 
M 4 HOH B 15 715 40 HOH HOH . 
M 4 HOH B 16 716 38 HOH HOH . 
M 4 HOH B 17 717 41 HOH HOH . 
M 4 HOH B 18 718 44 HOH HOH . 
N 4 HOH D 1 101 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 -24.077 42.345 -9.262 1 72.3 ? C1 GOL 603 B 1 
HETATM 2 O O1 GOL . . . J 3 -24.729 43.514 -9.73 1 58.38 ? O1 GOL 603 B 1 
HETATM 3 C C2 GOL . . . J 3 -24.615 41.59 -8.002 1 61.92 ? C2 GOL 603 B 1 
HETATM 4 O O2 GOL . . . J 3 -24.025 42.302 -6.947 1 70.41 ? O2 GOL 603 B 1 
HETATM 5 C C3 GOL . . . J 3 -26.106 41.666 -7.597 1 54.22 ? C3 GOL 603 B 1 
HETATM 6 O O3 GOL . . . J 3 -26.401 40.517 -6.799 1 64.36 ? O3 GOL 603 B 1 
HETATM 7 H H11 GOL . . . J 3 -23.054 42.625 -9.043 1 86.81 ? H11 GOL 603 B 1 
HETATM 8 H H12 GOL . . . J 3 -24.09 41.634 -10.079 1 86.81 ? H12 GOL 603 B 1 
HETATM 9 H HO1 GOL . . . J 3 -24.574 43.705 -10.636 1 70.11 ? HO1 GOL 603 B 1 
HETATM 10 H H2 GOL . . . J 3 -24.416 40.546 -8.212 1 74.35 ? H2 GOL 603 B 1 
HETATM 11 H HO2 GOL . . . J 3 -24.081 41.892 -6.118 1 84.55 ? HO2 GOL 603 B 1 
HETATM 12 H H31 GOL . . . J 3 -26.729 41.669 -8.482 1 65.12 ? H31 GOL 603 B 1 
HETATM 13 H H32 GOL . . . J 3 -26.287 42.567 -7.025 1 65.12 ? H32 GOL 603 B 1 
HETATM 14 H HO3 GOL . . . J 3 -27.004 39.925 -7.202 1 77.28 ? HO3 GOL 603 B 1 
#
_model_server_stats.io_time_ms              191 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#