data_7ZY6 # _model_server_result.job_id prIo4BF8eOMkViJJ5Y9ZxQ _model_server_result.datetime_utc '2025-03-26 19:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zy6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 7ZY6 # _exptl.entry_id 7ZY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.477 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-imidazo[1,2-a]pyridin-3-yl-~{N}-[(1~{R})-1-(6-pyrrolidin-1-ylpyridin-3-yl)ethyl]pyridin-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZY6 _cell.length_a 45.944 _cell.length_b 78.806 _cell.length_c 97.039 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H24 N6' _chem_comp.formula_weight 384.477 _chem_comp.id KCI _chem_comp.mon_nstd_flag . _chem_comp.name 5-imidazo[1,2-a]pyridin-3-yl-~{N}-[(1~{R})-1-(6-pyrrolidin-1-ylpyridin-3-yl)ethyl]pyridin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 KCI sing 173 n n C27 C26 KCI sing 174 n n C28 C29 KCI sing 175 n n C29 N25 KCI sing 176 n n C26 N25 KCI sing 177 n n N25 C22 KCI sing 178 n n C22 N23 KCI doub 179 n y C22 C21 KCI sing 180 n y N23 C24 KCI sing 181 n y C21 C20 KCI doub 182 n y C24 C19 KCI doub 183 n y C20 C19 KCI sing 184 n y C7 N8 KCI doub 185 n y C7 C6 KCI sing 186 n y N8 C9 KCI sing 187 n y C19 C2 KCI sing 188 n n C11 N12 KCI sing 189 n y C11 C10 KCI doub 190 n y N12 C13 KCI doub 191 n y C13 C14 KCI sing 192 n y C13 N18 KCI sing 193 n y C10 C6 KCI sing 194 n n C10 N18 KCI sing 195 n y C14 C15 KCI doub 196 n y C6 C5 KCI doub 197 n y N18 C17 KCI sing 198 n y C9 C4 KCI doub 199 n y C15 C16 KCI sing 200 n y C17 C16 KCI doub 201 n y C5 C4 KCI sing 202 n y C4 N3 KCI sing 203 n n C2 N3 KCI sing 204 n n C2 C1 KCI sing 205 n n C1 H1 KCI sing 206 n n C1 H2 KCI sing 207 n n C1 H3 KCI sing 208 n n C2 H4 KCI sing 209 n n C5 H5 KCI sing 210 n n C7 H6 KCI sing 211 n n C11 H7 KCI sing 212 n n C15 H8 KCI sing 213 n n C16 H9 KCI sing 214 n n C17 H10 KCI sing 215 n n C21 H11 KCI sing 216 n n C24 H12 KCI sing 217 n n C27 H13 KCI sing 218 n n C27 H14 KCI sing 219 n n N3 H15 KCI sing 220 n n C9 H16 KCI sing 221 n n C14 H17 KCI sing 222 n n C20 H18 KCI sing 223 n n C26 H19 KCI sing 224 n n C26 H20 KCI sing 225 n n C28 H21 KCI sing 226 n n C28 H22 KCI sing 227 n n C29 H23 KCI sing 228 n n C29 H24 KCI sing 229 n n # _atom_sites.entry_id 7ZY6 _atom_sites.fract_transf_matrix[1][1] 0.021766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KCI A 1 1001 1 KCI INX . C 3 HOH A 1 1101 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KCI . . . B 2 11.777 10.455 -11.816 1 86.51 ? C1 KCI 1001 A 1 HETATM 2 C C2 KCI . . . B 2 12.002 9.222 -12.7 1 86.76 ? C2 KCI 1001 A 1 HETATM 3 C C4 KCI . . . B 2 10.932 6.962 -13.061 1 86.84 ? C4 KCI 1001 A 1 HETATM 4 C C5 KCI . . . B 2 9.749 6.215 -13.071 1 87.07 ? C5 KCI 1001 A 1 HETATM 5 C C6 KCI . . . B 2 9.766 4.954 -13.685 1 87.19 ? C6 KCI 1001 A 1 HETATM 6 C C7 KCI . . . B 2 10.967 4.508 -14.264 1 86.86 ? C7 KCI 1001 A 1 HETATM 7 C C11 KCI . . . B 2 7.267 4.555 -14.008 1 87.81 ? C11 KCI 1001 A 1 HETATM 8 C C15 KCI . . . B 2 7.744 0.083 -13.549 1 88.13 ? C15 KCI 1001 A 1 HETATM 9 C C16 KCI . . . B 2 9.092 0.476 -13.394 1 88.18 ? C16 KCI 1001 A 1 HETATM 10 C C17 KCI . . . B 2 9.428 1.791 -13.432 1 87.97 ? C17 KCI 1001 A 1 HETATM 11 C C19 KCI . . . B 2 12.132 9.636 -14.151 1 86.72 ? C19 KCI 1001 A 1 HETATM 12 C C21 KCI . . . B 2 13.635 10.219 -15.898 1 86.89 ? C21 KCI 1001 A 1 HETATM 13 C C24 KCI . . . B 2 11.048 9.869 -15.008 1 87.03 ? C24 KCI 1001 A 1 HETATM 14 C C27 KCI . . . B 2 13.908 11.429 -20.113 1 87.14 ? C27 KCI 1001 A 1 HETATM 15 N N3 KCI . . . B 2 10.947 8.228 -12.454 1 87.04 ? N3 KCI 1001 A 1 HETATM 16 N N8 KCI . . . B 2 12.057 5.245 -14.231 1 86.53 ? N8 KCI 1001 A 1 HETATM 17 C C9 KCI . . . B 2 12.076 6.424 -13.649 1 86.52 ? C9 KCI 1001 A 1 HETATM 18 C C10 KCI . . . B 2 8.541 4.124 -13.761 1 87.63 ? C10 KCI 1001 A 1 HETATM 19 N N12 KCI . . . B 2 6.443 3.503 -13.995 1 87.85 ? N12 KCI 1001 A 1 HETATM 20 C C13 KCI . . . B 2 7.15 2.398 -13.806 1 87.78 ? C13 KCI 1001 A 1 HETATM 21 C C14 KCI . . . B 2 6.78 1.038 -13.748 1 87.92 ? C14 KCI 1001 A 1 HETATM 22 N N18 KCI . . . B 2 8.474 2.752 -13.656 1 87.8 ? N18 KCI 1001 A 1 HETATM 23 C C20 KCI . . . B 2 13.427 9.815 -14.602 1 86.65 ? C20 KCI 1001 A 1 HETATM 24 C C22 KCI . . . B 2 12.526 10.441 -16.716 1 87.42 ? C22 KCI 1001 A 1 HETATM 25 N N23 KCI . . . B 2 11.266 10.274 -16.262 1 87.31 ? N23 KCI 1001 A 1 HETATM 26 N N25 KCI . . . B 2 12.792 10.892 -18.008 1 87.46 ? N25 KCI 1001 A 1 HETATM 27 C C26 KCI . . . B 2 14.092 10.795 -18.711 1 87.24 ? C26 KCI 1001 A 1 HETATM 28 C C28 KCI . . . B 2 12.712 12.383 -19.868 1 87.29 ? C28 KCI 1001 A 1 HETATM 29 C C29 KCI . . . B 2 11.839 11.59 -18.873 1 87.38 ? C29 KCI 1001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #