data_7ZYD
#
_model_server_result.job_id            Fd0kA63ZmKYolhIKG13EkA 
_model_server_result.datetime_utc      '2024-11-05 10:54:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    7ZYD 
#
_exptl.entry_id    7ZYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.66 
_cell.angle_gamma         90 
_cell.entry_id            7ZYD 
_cell.length_a            58.72 
_cell.length_b            45.895 
_cell.length_c            63.501 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 76 n n 
PG O2G ATP sing 77 n n 
PG O3G ATP sing 78 n n 
PG O3B ATP sing 79 n n 
O2G HOG2 ATP sing 80 n n 
O3G HOG3 ATP sing 81 n n 
PB O1B ATP doub 82 n n 
PB O2B ATP sing 83 n n 
PB O3B ATP sing 84 n n 
PB O3A ATP sing 85 n n 
O2B HOB2 ATP sing 86 n n 
PA O1A ATP doub 87 n n 
PA O2A ATP sing 88 n n 
PA O3A ATP sing 89 n n 
PA O5' ATP sing 90 n n 
O2A HOA2 ATP sing 91 n n 
O5' C5' ATP sing 92 n n 
C5' C4' ATP sing 93 n n 
C5' "H5'1" ATP sing 94 n n 
C5' "H5'2" ATP sing 95 n n 
C4' O4' ATP sing 96 n n 
C4' C3' ATP sing 97 n n 
C4' H4' ATP sing 98 n n 
O4' C1' ATP sing 99 n n 
C3' O3' ATP sing 100 n n 
C3' C2' ATP sing 101 n n 
C3' H3' ATP sing 102 n n 
O3' HO3' ATP sing 103 n n 
C2' O2' ATP sing 104 n n 
C2' C1' ATP sing 105 n n 
C2' H2' ATP sing 106 n n 
O2' HO2' ATP sing 107 n n 
C1' N9 ATP sing 108 n n 
C1' H1' ATP sing 109 n n 
N9 C8 ATP sing 110 n y 
N9 C4 ATP sing 111 n y 
C8 N7 ATP doub 112 n y 
C8 H8 ATP sing 113 n n 
N7 C5 ATP sing 114 n y 
C5 C6 ATP sing 115 n y 
C5 C4 ATP doub 116 n y 
C6 N6 ATP sing 117 n n 
C6 N1 ATP doub 118 n y 
N6 HN61 ATP sing 119 n n 
N6 HN62 ATP sing 120 n n 
N1 C2 ATP sing 121 n y 
C2 N3 ATP doub 122 n y 
C2 H2 ATP sing 123 n n 
N3 C4 ATP sing 124 n y 
#
_atom_sites.entry_id                     7ZYD 
_atom_sites.fract_transf_matrix[1][1]    0.01703 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006763 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021789 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016944 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 401 1 ACT ACT . 
C 2 ACT A 1 402 2 ACT ACT . 
D 3 ATP A 1 403 1 ATP ATP . 
E 4 KD6 A 1 404 1 KD6 P34 . 
F 5 HOH A 1 501 181 HOH HOH . 
F 5 HOH A 2 502 165 HOH HOH . 
F 5 HOH A 3 503 167 HOH HOH . 
F 5 HOH A 4 504 138 HOH HOH . 
F 5 HOH A 5 505 134 HOH HOH . 
F 5 HOH A 6 506 133 HOH HOH . 
F 5 HOH A 7 507 28 HOH HOH . 
F 5 HOH A 8 508 164 HOH HOH . 
F 5 HOH A 9 509 175 HOH HOH . 
F 5 HOH A 10 510 152 HOH HOH . 
F 5 HOH A 11 511 131 HOH HOH . 
F 5 HOH A 12 512 178 HOH HOH . 
F 5 HOH A 13 513 84 HOH HOH . 
F 5 HOH A 14 514 106 HOH HOH . 
F 5 HOH A 15 515 61 HOH HOH . 
F 5 HOH A 16 516 31 HOH HOH . 
F 5 HOH A 17 517 136 HOH HOH . 
F 5 HOH A 18 518 104 HOH HOH . 
F 5 HOH A 19 519 97 HOH HOH . 
F 5 HOH A 20 520 98 HOH HOH . 
F 5 HOH A 21 521 148 HOH HOH . 
F 5 HOH A 22 522 62 HOH HOH . 
F 5 HOH A 23 523 7 HOH HOH . 
F 5 HOH A 24 524 22 HOH HOH . 
F 5 HOH A 25 525 143 HOH HOH . 
F 5 HOH A 26 526 130 HOH HOH . 
F 5 HOH A 27 527 76 HOH HOH . 
F 5 HOH A 28 528 161 HOH HOH . 
F 5 HOH A 29 529 67 HOH HOH . 
F 5 HOH A 30 530 90 HOH HOH . 
F 5 HOH A 31 531 96 HOH HOH . 
F 5 HOH A 32 532 48 HOH HOH . 
F 5 HOH A 33 533 75 HOH HOH . 
F 5 HOH A 34 534 37 HOH HOH . 
F 5 HOH A 35 535 110 HOH HOH . 
F 5 HOH A 36 536 27 HOH HOH . 
F 5 HOH A 37 537 156 HOH HOH . 
F 5 HOH A 38 538 12 HOH HOH . 
F 5 HOH A 39 539 49 HOH HOH . 
F 5 HOH A 40 540 170 HOH HOH . 
F 5 HOH A 41 541 127 HOH HOH . 
F 5 HOH A 42 542 160 HOH HOH . 
F 5 HOH A 43 543 4 HOH HOH . 
F 5 HOH A 44 544 80 HOH HOH . 
F 5 HOH A 45 545 153 HOH HOH . 
F 5 HOH A 46 546 69 HOH HOH . 
F 5 HOH A 47 547 14 HOH HOH . 
F 5 HOH A 48 548 3 HOH HOH . 
F 5 HOH A 49 549 11 HOH HOH . 
F 5 HOH A 50 550 93 HOH HOH . 
F 5 HOH A 51 551 169 HOH HOH . 
F 5 HOH A 52 552 23 HOH HOH . 
F 5 HOH A 53 553 43 HOH HOH . 
F 5 HOH A 54 554 83 HOH HOH . 
F 5 HOH A 55 555 102 HOH HOH . 
F 5 HOH A 56 556 58 HOH HOH . 
F 5 HOH A 57 557 18 HOH HOH . 
F 5 HOH A 58 558 116 HOH HOH . 
F 5 HOH A 59 559 17 HOH HOH . 
F 5 HOH A 60 560 177 HOH HOH . 
F 5 HOH A 61 561 71 HOH HOH . 
F 5 HOH A 62 562 42 HOH HOH . 
F 5 HOH A 63 563 50 HOH HOH . 
F 5 HOH A 64 564 147 HOH HOH . 
F 5 HOH A 65 565 173 HOH HOH . 
F 5 HOH A 66 566 65 HOH HOH . 
F 5 HOH A 67 567 171 HOH HOH . 
F 5 HOH A 68 568 9 HOH HOH . 
F 5 HOH A 69 569 105 HOH HOH . 
F 5 HOH A 70 570 24 HOH HOH . 
F 5 HOH A 71 571 47 HOH HOH . 
F 5 HOH A 72 572 179 HOH HOH . 
F 5 HOH A 73 573 35 HOH HOH . 
F 5 HOH A 74 574 38 HOH HOH . 
F 5 HOH A 75 575 10 HOH HOH . 
F 5 HOH A 76 576 125 HOH HOH . 
F 5 HOH A 77 577 120 HOH HOH . 
F 5 HOH A 78 578 137 HOH HOH . 
F 5 HOH A 79 579 142 HOH HOH . 
F 5 HOH A 80 580 128 HOH HOH . 
F 5 HOH A 81 581 176 HOH HOH . 
F 5 HOH A 82 582 19 HOH HOH . 
F 5 HOH A 83 583 2 HOH HOH . 
F 5 HOH A 84 584 79 HOH HOH . 
F 5 HOH A 85 585 72 HOH HOH . 
F 5 HOH A 86 586 82 HOH HOH . 
F 5 HOH A 87 587 53 HOH HOH . 
F 5 HOH A 88 588 77 HOH HOH . 
F 5 HOH A 89 589 29 HOH HOH . 
F 5 HOH A 90 590 6 HOH HOH . 
F 5 HOH A 91 591 121 HOH HOH . 
F 5 HOH A 92 592 21 HOH HOH . 
F 5 HOH A 93 593 13 HOH HOH . 
F 5 HOH A 94 594 99 HOH HOH . 
F 5 HOH A 95 595 111 HOH HOH . 
F 5 HOH A 96 596 68 HOH HOH . 
F 5 HOH A 97 597 40 HOH HOH . 
F 5 HOH A 98 598 94 HOH HOH . 
F 5 HOH A 99 599 117 HOH HOH . 
F 5 HOH A 100 600 81 HOH HOH . 
F 5 HOH A 101 601 5 HOH HOH . 
F 5 HOH A 102 602 101 HOH HOH . 
F 5 HOH A 103 603 39 HOH HOH . 
F 5 HOH A 104 604 59 HOH HOH . 
F 5 HOH A 105 605 89 HOH HOH . 
F 5 HOH A 106 606 25 HOH HOH . 
F 5 HOH A 107 607 115 HOH HOH . 
F 5 HOH A 108 608 36 HOH HOH . 
F 5 HOH A 109 609 16 HOH HOH . 
F 5 HOH A 110 610 139 HOH HOH . 
F 5 HOH A 111 611 34 HOH HOH . 
F 5 HOH A 112 612 33 HOH HOH . 
F 5 HOH A 113 613 87 HOH HOH . 
F 5 HOH A 114 614 118 HOH HOH . 
F 5 HOH A 115 615 129 HOH HOH . 
F 5 HOH A 116 616 56 HOH HOH . 
F 5 HOH A 117 617 60 HOH HOH . 
F 5 HOH A 118 618 54 HOH HOH . 
F 5 HOH A 119 619 154 HOH HOH . 
F 5 HOH A 120 620 15 HOH HOH . 
F 5 HOH A 121 621 157 HOH HOH . 
F 5 HOH A 122 622 20 HOH HOH . 
F 5 HOH A 123 623 92 HOH HOH . 
F 5 HOH A 124 624 8 HOH HOH . 
F 5 HOH A 125 625 70 HOH HOH . 
F 5 HOH A 126 626 26 HOH HOH . 
F 5 HOH A 127 627 91 HOH HOH . 
F 5 HOH A 128 628 52 HOH HOH . 
F 5 HOH A 129 629 149 HOH HOH . 
F 5 HOH A 130 630 66 HOH HOH . 
F 5 HOH A 131 631 166 HOH HOH . 
F 5 HOH A 132 632 122 HOH HOH . 
F 5 HOH A 133 633 180 HOH HOH . 
F 5 HOH A 134 634 155 HOH HOH . 
F 5 HOH A 135 635 132 HOH HOH . 
F 5 HOH A 136 636 144 HOH HOH . 
F 5 HOH A 137 637 108 HOH HOH . 
F 5 HOH A 138 638 163 HOH HOH . 
F 5 HOH A 139 639 123 HOH HOH . 
F 5 HOH A 140 640 158 HOH HOH . 
F 5 HOH A 141 641 140 HOH HOH . 
F 5 HOH A 142 642 174 HOH HOH . 
F 5 HOH A 143 643 113 HOH HOH . 
F 5 HOH A 144 644 150 HOH HOH . 
F 5 HOH A 145 645 151 HOH HOH . 
F 5 HOH A 146 646 159 HOH HOH . 
F 5 HOH A 147 647 119 HOH HOH . 
F 5 HOH A 148 648 30 HOH HOH . 
F 5 HOH A 149 649 63 HOH HOH . 
F 5 HOH A 150 650 74 HOH HOH . 
F 5 HOH A 151 651 46 HOH HOH . 
F 5 HOH A 152 652 146 HOH HOH . 
F 5 HOH A 153 653 57 HOH HOH . 
F 5 HOH A 154 654 112 HOH HOH . 
F 5 HOH A 155 655 141 HOH HOH . 
F 5 HOH A 156 656 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 3 -117.274 -179.282 302.851 1 51.5 ? PG ATP 403 A 1 
HETATM 2 O O1G ATP . . . D 3 -117.046 -180.7 303.162 1 49.59 ? O1G ATP 403 A 1 
HETATM 3 O O2G ATP . . . D 3 -118.063 -179.118 301.604 1 53.27 ? O2G ATP 403 A 1 
HETATM 4 O O3G ATP . . . D 3 -116.074 -178.407 302.945 1 51.5 ? O3G ATP 403 A 1 
HETATM 5 P PB ATP . . . D 3 -118.909 -177.464 304.448 1 49.16 ? PB ATP 403 A 1 
HETATM 6 O O1B ATP . . . D 3 -118.48 -177.341 305.839 1 50.77 ? O1B ATP 403 A 1 
HETATM 7 O O2B ATP . . . D 3 -118.59 -176.341 303.544 1 50.61 ? O2B ATP 403 A 1 
HETATM 8 O O3B ATP . . . D 3 -118.204 -178.826 304.074 1 51.65 ? O3B ATP 403 A 1 
HETATM 9 P PA ATP . . . D 3 -121.449 -178.849 304.938 1 50.47 ? PA ATP 403 A 1 
HETATM 10 O O1A ATP . . . D 3 -120.763 -180.02 305.544 1 50.38 ? O1A ATP 403 A 1 
HETATM 11 O O2A ATP . . . D 3 -122.431 -179.176 303.898 1 50.3 ? O2A ATP 403 A 1 
HETATM 12 O O3A ATP . . . D 3 -120.488 -177.797 304.179 1 50.34 ? O3A ATP 403 A 1 
HETATM 13 O O5' ATP . . . D 3 -122.115 -178.092 306.175 1 46.19 ? O5' ATP 403 A 1 
HETATM 14 C C5' ATP . . . D 3 -122.802 -176.874 306.02 1 43.17 ? C5' ATP 403 A 1 
HETATM 15 C C4' ATP . . . D 3 -122.616 -176.018 307.22 1 40.44 ? C4' ATP 403 A 1 
HETATM 16 O O4' ATP . . . D 3 -123.119 -176.693 308.358 1 38.49 ? O4' ATP 403 A 1 
HETATM 17 C C3' ATP . . . D 3 -121.185 -175.683 307.457 1 37.61 ? C3' ATP 403 A 1 
HETATM 18 O O3' ATP . . . D 3 -121.074 -174.291 307.537 1 38.31 ? O3' ATP 403 A 1 
HETATM 19 C C2' ATP . . . D 3 -120.919 -176.4 308.758 1 34.8 ? C2' ATP 403 A 1 
HETATM 20 O O2' ATP . . . D 3 -119.956 -175.736 309.52 1 34.23 ? O2' ATP 403 A 1 
HETATM 21 C C1' ATP . . . D 3 -122.303 -176.422 309.429 1 34.54 ? C1' ATP 403 A 1 
HETATM 22 N N9 ATP . . . D 3 -122.405 -177.43 310.476 1 27.74 ? N9 ATP 403 A 1 
HETATM 23 C C8 ATP . . . D 3 -122.272 -178.719 310.339 1 28.02 ? C8 ATP 403 A 1 
HETATM 24 N N7 ATP . . . D 3 -122.401 -179.306 311.523 1 29.75 ? N7 ATP 403 A 1 
HETATM 25 C C5 ATP . . . D 3 -122.64 -178.401 312.423 1 27.73 ? C5 ATP 403 A 1 
HETATM 26 C C6 ATP . . . D 3 -122.901 -178.367 313.844 1 29.33 ? C6 ATP 403 A 1 
HETATM 27 N N6 ATP . . . D 3 -122.924 -179.498 314.536 1 23.49 ? N6 ATP 403 A 1 
HETATM 28 N N1 ATP . . . D 3 -123.089 -177.178 314.436 1 31.87 ? N1 ATP 403 A 1 
HETATM 29 C C2 ATP . . . D 3 -123.084 -176.065 313.731 1 31.2 ? C2 ATP 403 A 1 
HETATM 30 N N3 ATP . . . D 3 -122.868 -176.033 312.454 1 27.96 ? N3 ATP 403 A 1 
HETATM 31 C C4 ATP . . . D 3 -122.629 -177.144 311.736 1 28.21 ? C4 ATP 403 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#