data_7ZYK
#
_model_server_result.job_id            K0V6ayAn64zk0ufFzPbKrw 
_model_server_result.datetime_utc      '2024-11-28 19:09:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    7ZYK 
#
_exptl.entry_id    7ZYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.38 
_cell.angle_gamma         90 
_cell.entry_id            7ZYK 
_cell.length_a            58.343 
_cell.length_b            45.842 
_cell.length_c            63.266 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 7 n n 
PB O2B ADP sing 8 n n 
PB O3B ADP sing 9 n n 
PB O3A ADP sing 10 n n 
O2B HOB2 ADP sing 11 n n 
O3B HOB3 ADP sing 12 n n 
PA O1A ADP doub 13 n n 
PA O2A ADP sing 14 n n 
PA O3A ADP sing 15 n n 
PA O5' ADP sing 16 n n 
O2A HOA2 ADP sing 17 n n 
O5' C5' ADP sing 18 n n 
C5' C4' ADP sing 19 n n 
C5' "H5'1" ADP sing 20 n n 
C5' "H5'2" ADP sing 21 n n 
C4' O4' ADP sing 22 n n 
C4' C3' ADP sing 23 n n 
C4' H4' ADP sing 24 n n 
O4' C1' ADP sing 25 n n 
C3' O3' ADP sing 26 n n 
C3' C2' ADP sing 27 n n 
C3' H3' ADP sing 28 n n 
O3' HO3' ADP sing 29 n n 
C2' O2' ADP sing 30 n n 
C2' C1' ADP sing 31 n n 
C2' H2' ADP sing 32 n n 
O2' HO2' ADP sing 33 n n 
C1' N9 ADP sing 34 n n 
C1' H1' ADP sing 35 n n 
N9 C8 ADP sing 36 n y 
N9 C4 ADP sing 37 n y 
C8 N7 ADP doub 38 n y 
C8 H8 ADP sing 39 n n 
N7 C5 ADP sing 40 n y 
C5 C6 ADP sing 41 n y 
C5 C4 ADP doub 42 n y 
C6 N6 ADP sing 43 n n 
C6 N1 ADP doub 44 n y 
N6 HN61 ADP sing 45 n n 
N6 HN62 ADP sing 46 n n 
N1 C2 ADP sing 47 n y 
C2 N3 ADP doub 48 n y 
C2 H2 ADP sing 49 n n 
N3 C4 ADP sing 50 n y 
#
_atom_sites.entry_id                     7ZYK 
_atom_sites.fract_transf_matrix[1][1]    0.01714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00671 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021814 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 401 ADP ADP . 
C 3 KEC A 1 402 1 KEC 120 . 
D 4 ACT A 1 403 1 ACT ACT . 
E 4 ACT A 1 404 2 ACT ACT . 
F 4 ACT A 1 405 3 ACT ACT . 
G 4 ACT A 1 406 4 ACT ACT . 
H 5 HOH A 1 501 145 HOH HOH . 
H 5 HOH A 2 502 39 HOH HOH . 
H 5 HOH A 3 503 215 HOH HOH . 
H 5 HOH A 4 504 176 HOH HOH . 
H 5 HOH A 5 505 125 HOH HOH . 
H 5 HOH A 6 506 221 HOH HOH . 
H 5 HOH A 7 507 27 HOH HOH . 
H 5 HOH A 8 508 188 HOH HOH . 
H 5 HOH A 9 509 169 HOH HOH . 
H 5 HOH A 10 510 225 HOH HOH . 
H 5 HOH A 11 511 3 HOH HOH . 
H 5 HOH A 12 512 173 HOH HOH . 
H 5 HOH A 13 513 182 HOH HOH . 
H 5 HOH A 14 514 238 HOH HOH . 
H 5 HOH A 15 515 2 HOH HOH . 
H 5 HOH A 16 516 24 HOH HOH . 
H 5 HOH A 17 517 79 HOH HOH . 
H 5 HOH A 18 518 106 HOH HOH . 
H 5 HOH A 19 519 72 HOH HOH . 
H 5 HOH A 20 520 92 HOH HOH . 
H 5 HOH A 21 521 63 HOH HOH . 
H 5 HOH A 22 522 154 HOH HOH . 
H 5 HOH A 23 523 175 HOH HOH . 
H 5 HOH A 24 524 41 HOH HOH . 
H 5 HOH A 25 525 99 HOH HOH . 
H 5 HOH A 26 526 197 HOH HOH . 
H 5 HOH A 27 527 115 HOH HOH . 
H 5 HOH A 28 528 229 HOH HOH . 
H 5 HOH A 29 529 158 HOH HOH . 
H 5 HOH A 30 530 184 HOH HOH . 
H 5 HOH A 31 531 235 HOH HOH . 
H 5 HOH A 32 532 166 HOH HOH . 
H 5 HOH A 33 533 230 HOH HOH . 
H 5 HOH A 34 534 171 HOH HOH . 
H 5 HOH A 35 535 170 HOH HOH . 
H 5 HOH A 36 536 28 HOH HOH . 
H 5 HOH A 37 537 136 HOH HOH . 
H 5 HOH A 38 538 50 HOH HOH . 
H 5 HOH A 39 539 45 HOH HOH . 
H 5 HOH A 40 540 212 HOH HOH . 
H 5 HOH A 41 541 178 HOH HOH . 
H 5 HOH A 42 542 224 HOH HOH . 
H 5 HOH A 43 543 96 HOH HOH . 
H 5 HOH A 44 544 47 HOH HOH . 
H 5 HOH A 45 545 210 HOH HOH . 
H 5 HOH A 46 546 33 HOH HOH . 
H 5 HOH A 47 547 216 HOH HOH . 
H 5 HOH A 48 548 177 HOH HOH . 
H 5 HOH A 49 549 7 HOH HOH . 
H 5 HOH A 50 550 110 HOH HOH . 
H 5 HOH A 51 551 127 HOH HOH . 
H 5 HOH A 52 552 13 HOH HOH . 
H 5 HOH A 53 553 112 HOH HOH . 
H 5 HOH A 54 554 78 HOH HOH . 
H 5 HOH A 55 555 227 HOH HOH . 
H 5 HOH A 56 556 192 HOH HOH . 
H 5 HOH A 57 557 8 HOH HOH . 
H 5 HOH A 58 558 164 HOH HOH . 
H 5 HOH A 59 559 143 HOH HOH . 
H 5 HOH A 60 560 80 HOH HOH . 
H 5 HOH A 61 561 82 HOH HOH . 
H 5 HOH A 62 562 200 HOH HOH . 
H 5 HOH A 63 563 228 HOH HOH . 
H 5 HOH A 64 564 30 HOH HOH . 
H 5 HOH A 65 565 71 HOH HOH . 
H 5 HOH A 66 566 64 HOH HOH . 
H 5 HOH A 67 567 217 HOH HOH . 
H 5 HOH A 68 568 26 HOH HOH . 
H 5 HOH A 69 569 4 HOH HOH . 
H 5 HOH A 70 570 91 HOH HOH . 
H 5 HOH A 71 571 195 HOH HOH . 
H 5 HOH A 72 572 241 HOH HOH . 
H 5 HOH A 73 573 15 HOH HOH . 
H 5 HOH A 74 574 211 HOH HOH . 
H 5 HOH A 75 575 113 HOH HOH . 
H 5 HOH A 76 576 68 HOH HOH . 
H 5 HOH A 77 577 10 HOH HOH . 
H 5 HOH A 78 578 1 HOH HOH . 
H 5 HOH A 79 579 17 HOH HOH . 
H 5 HOH A 80 580 81 HOH HOH . 
H 5 HOH A 81 581 14 HOH HOH . 
H 5 HOH A 82 582 153 HOH HOH . 
H 5 HOH A 83 583 205 HOH HOH . 
H 5 HOH A 84 584 181 HOH HOH . 
H 5 HOH A 85 585 129 HOH HOH . 
H 5 HOH A 86 586 194 HOH HOH . 
H 5 HOH A 87 587 174 HOH HOH . 
H 5 HOH A 88 588 19 HOH HOH . 
H 5 HOH A 89 589 206 HOH HOH . 
H 5 HOH A 90 590 85 HOH HOH . 
H 5 HOH A 91 591 172 HOH HOH . 
H 5 HOH A 92 592 69 HOH HOH . 
H 5 HOH A 93 593 105 HOH HOH . 
H 5 HOH A 94 594 240 HOH HOH . 
H 5 HOH A 95 595 107 HOH HOH . 
H 5 HOH A 96 596 116 HOH HOH . 
H 5 HOH A 97 597 163 HOH HOH . 
H 5 HOH A 98 598 53 HOH HOH . 
H 5 HOH A 99 599 20 HOH HOH . 
H 5 HOH A 100 600 196 HOH HOH . 
H 5 HOH A 101 601 94 HOH HOH . 
H 5 HOH A 102 602 117 HOH HOH . 
H 5 HOH A 103 603 202 HOH HOH . 
H 5 HOH A 104 604 37 HOH HOH . 
H 5 HOH A 105 605 118 HOH HOH . 
H 5 HOH A 106 606 146 HOH HOH . 
H 5 HOH A 107 607 66 HOH HOH . 
H 5 HOH A 108 608 9 HOH HOH . 
H 5 HOH A 109 609 58 HOH HOH . 
H 5 HOH A 110 610 52 HOH HOH . 
H 5 HOH A 111 611 214 HOH HOH . 
H 5 HOH A 112 612 32 HOH HOH . 
H 5 HOH A 113 613 34 HOH HOH . 
H 5 HOH A 114 614 133 HOH HOH . 
H 5 HOH A 115 615 185 HOH HOH . 
H 5 HOH A 116 616 149 HOH HOH . 
H 5 HOH A 117 617 183 HOH HOH . 
H 5 HOH A 118 618 233 HOH HOH . 
H 5 HOH A 119 619 84 HOH HOH . 
H 5 HOH A 120 620 31 HOH HOH . 
H 5 HOH A 121 621 5 HOH HOH . 
H 5 HOH A 122 622 74 HOH HOH . 
H 5 HOH A 123 623 73 HOH HOH . 
H 5 HOH A 124 624 103 HOH HOH . 
H 5 HOH A 125 625 22 HOH HOH . 
H 5 HOH A 126 626 36 HOH HOH . 
H 5 HOH A 127 627 77 HOH HOH . 
H 5 HOH A 128 628 239 HOH HOH . 
H 5 HOH A 129 629 6 HOH HOH . 
H 5 HOH A 130 630 67 HOH HOH . 
H 5 HOH A 131 631 128 HOH HOH . 
H 5 HOH A 132 632 167 HOH HOH . 
H 5 HOH A 133 633 207 HOH HOH . 
H 5 HOH A 134 634 132 HOH HOH . 
H 5 HOH A 135 635 48 HOH HOH . 
H 5 HOH A 136 636 21 HOH HOH . 
H 5 HOH A 137 637 222 HOH HOH . 
H 5 HOH A 138 638 11 HOH HOH . 
H 5 HOH A 139 639 25 HOH HOH . 
H 5 HOH A 140 640 142 HOH HOH . 
H 5 HOH A 141 641 150 HOH HOH . 
H 5 HOH A 142 642 220 HOH HOH . 
H 5 HOH A 143 643 148 HOH HOH . 
H 5 HOH A 144 644 147 HOH HOH . 
H 5 HOH A 145 645 35 HOH HOH . 
H 5 HOH A 146 646 12 HOH HOH . 
H 5 HOH A 147 647 190 HOH HOH . 
H 5 HOH A 148 648 138 HOH HOH . 
H 5 HOH A 149 649 199 HOH HOH . 
H 5 HOH A 150 650 100 HOH HOH . 
H 5 HOH A 151 651 29 HOH HOH . 
H 5 HOH A 152 652 89 HOH HOH . 
H 5 HOH A 153 653 223 HOH HOH . 
H 5 HOH A 154 654 186 HOH HOH . 
H 5 HOH A 155 655 242 HOH HOH . 
H 5 HOH A 156 656 232 HOH HOH . 
H 5 HOH A 157 657 59 HOH HOH . 
H 5 HOH A 158 658 97 HOH HOH . 
H 5 HOH A 159 659 46 HOH HOH . 
H 5 HOH A 160 660 121 HOH HOH . 
H 5 HOH A 161 661 209 HOH HOH . 
H 5 HOH A 162 662 60 HOH HOH . 
H 5 HOH A 163 663 90 HOH HOH . 
H 5 HOH A 164 664 62 HOH HOH . 
H 5 HOH A 165 665 139 HOH HOH . 
H 5 HOH A 166 666 236 HOH HOH . 
H 5 HOH A 167 667 180 HOH HOH . 
H 5 HOH A 168 668 109 HOH HOH . 
H 5 HOH A 169 669 131 HOH HOH . 
H 5 HOH A 170 670 189 HOH HOH . 
H 5 HOH A 171 671 243 HOH HOH . 
H 5 HOH A 172 672 179 HOH HOH . 
H 5 HOH A 173 673 104 HOH HOH . 
H 5 HOH A 174 674 75 HOH HOH . 
H 5 HOH A 175 675 157 HOH HOH . 
H 5 HOH A 176 676 144 HOH HOH . 
H 5 HOH A 177 677 231 HOH HOH . 
H 5 HOH A 178 678 152 HOH HOH . 
H 5 HOH A 179 679 43 HOH HOH . 
H 5 HOH A 180 680 168 HOH HOH . 
H 5 HOH A 181 681 119 HOH HOH . 
H 5 HOH A 182 682 213 HOH HOH . 
H 5 HOH A 183 683 156 HOH HOH . 
H 5 HOH A 184 684 155 HOH HOH . 
H 5 HOH A 185 685 203 HOH HOH . 
H 5 HOH A 186 686 18 HOH HOH . 
H 5 HOH A 187 687 204 HOH HOH . 
H 5 HOH A 188 688 201 HOH HOH . 
H 5 HOH A 189 689 208 HOH HOH . 
H 5 HOH A 190 690 161 HOH HOH . 
H 5 HOH A 191 691 198 HOH HOH . 
H 5 HOH A 192 692 162 HOH HOH . 
H 5 HOH A 193 693 102 HOH HOH . 
H 5 HOH A 194 694 234 HOH HOH . 
H 5 HOH A 195 695 140 HOH HOH . 
H 5 HOH A 196 696 226 HOH HOH . 
H 5 HOH A 197 697 165 HOH HOH . 
H 5 HOH A 198 698 56 HOH HOH . 
H 5 HOH A 199 699 101 HOH HOH . 
H 5 HOH A 200 700 130 HOH HOH . 
H 5 HOH A 201 701 219 HOH HOH . 
H 5 HOH A 202 702 126 HOH HOH . 
H 5 HOH A 203 703 16 HOH HOH . 
H 5 HOH A 204 704 159 HOH HOH . 
H 5 HOH A 205 705 98 HOH HOH . 
H 5 HOH A 206 706 83 HOH HOH . 
H 5 HOH A 207 707 151 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -116.602 -180.933 305.846 1 20 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -117.572 -180.213 304.946 1 20 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -115.786 -181.962 305.115 1 20 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -115.787 -179.975 306.683 1 20 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -119.078 -181.961 306.82 1 20 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -119.507 -182.228 305.415 1 20 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -119.431 -182.959 307.873 1 20 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -117.497 -181.777 306.849 1 20 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -119.543 -180.481 307.25 1 20 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -120.33 -179.756 306.272 1 20 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -120.43 -178.277 306.578 1 20 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -121.174 -178.076 307.804 1 20 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -119.122 -177.495 306.75 1 20 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -119.243 -176.214 306.141 1 20 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -118.944 -177.399 308.267 1 20 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -118.359 -176.171 308.643 1 20 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -120.369 -177.497 308.802 1 20 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -120.512 -178.324 309.991 1 20 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -120.546 -179.694 310.02 1 20 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -120.71 -180.182 311.222 1 20 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -120.8 -179.067 312.038 1 20 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -120.983 -178.924 313.426 1 20 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -121.138 -179.945 314.261 1 20 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -121.037 -177.665 313.924 1 20 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -120.909 -176.64 313.076 1 20 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -120.727 -176.657 311.759 1 20 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -120.684 -177.913 311.29 1 20 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           27 
#