data_7ZYM
#
_model_server_result.job_id            I3W-3-m4uayzD8eR6J_dEw 
_model_server_result.datetime_utc      '2024-11-22 19:21:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
#
_entry.id    7ZYM 
#
_exptl.entry_id    7ZYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              584.092 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZYM 
_cell.length_a            146.1 
_cell.length_b            146.1 
_cell.length_c            146.1 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    'I 2 2 3' 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H39 Cl N7 O2 P' 
_chem_comp.formula_weight    584.092 
_chem_comp.id                6GY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-chloro-N~4~-[2-(dimethylphosphoryl)phenyl]-N~2~-{2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Brigatinib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 N25 6GY sing 1 n n 
N25 C26 6GY sing 2 n n 
N25 C24 6GY sing 3 n n 
C26 C27 6GY sing 4 n n 
C27 N22 6GY sing 5 n n 
C24 C23 6GY sing 6 n n 
C23 N22 6GY sing 7 n n 
N22 C19 6GY sing 8 n n 
C20 C19 6GY sing 9 n n 
C20 C21 6GY sing 10 n n 
C19 C18 6GY sing 11 n n 
C21 N16 6GY sing 12 n n 
C18 C17 6GY sing 13 n n 
N16 C17 6GY sing 14 n n 
N16 C11 6GY sing 15 n n 
C34 C33 6GY doub 16 n y 
C34 C35 6GY sing 17 n y 
C33 C32 6GY sing 18 n y 
C11 C12 6GY doub 19 n y 
C11 C10 6GY sing 20 n y 
C12 C13 6GY sing 21 n y 
C35 C30 6GY doub 22 n y 
C10 C9 6GY doub 23 n y 
C32 C31 6GY doub 24 n y 
C13 O14 6GY sing 25 n n 
C13 C8 6GY doub 26 n y 
O14 C15 6GY sing 27 n n 
C30 C31 6GY sing 28 n y 
C30 N29 6GY sing 29 n n 
C9 C8 6GY sing 30 n y 
C8 N7 6GY sing 31 n n 
C31 P1 6GY sing 32 n n 
N29 C2 6GY sing 33 n n 
N3 C2 6GY doub 34 n y 
N3 C4 6GY sing 35 n y 
N7 C4 6GY sing 36 n n 
C2 C1 6GY sing 37 n y 
C4 N5 6GY doub 38 n y 
C3 P1 6GY sing 39 n n 
P1 O41 6GY doub 40 n n 
P1 C37 6GY sing 41 n n 
C1 C6 6GY doub 42 n y 
C1 CL 6GY sing 43 n n 
N5 C6 6GY sing 44 n y 
C3 H1 6GY sing 45 n n 
C3 H2 6GY sing 46 n n 
C3 H3 6GY sing 47 n n 
C6 H4 6GY sing 48 n n 
C9 H5 6GY sing 49 n n 
C10 H6 6GY sing 50 n n 
C12 H7 6GY sing 51 n n 
C15 H8 6GY sing 52 n n 
C15 H9 6GY sing 53 n n 
C15 H10 6GY sing 54 n n 
C18 H11 6GY sing 55 n n 
C18 H12 6GY sing 56 n n 
C26 H13 6GY sing 57 n n 
C26 H14 6GY sing 58 n n 
N7 H15 6GY sing 59 n n 
C17 H16 6GY sing 60 n n 
C17 H17 6GY sing 61 n n 
C19 H18 6GY sing 62 n n 
C20 H19 6GY sing 63 n n 
C20 H20 6GY sing 64 n n 
C21 H21 6GY sing 65 n n 
C21 H22 6GY sing 66 n n 
C23 H24 6GY sing 67 n n 
C23 H25 6GY sing 68 n n 
C24 H26 6GY sing 69 n n 
C24 H27 6GY sing 70 n n 
C27 H29 6GY sing 71 n n 
C27 H30 6GY sing 72 n n 
C28 H31 6GY sing 73 n n 
C28 H32 6GY sing 74 n n 
C28 H33 6GY sing 75 n n 
N29 H34 6GY sing 76 n n 
C32 H35 6GY sing 77 n n 
C33 H36 6GY sing 78 n n 
C34 H37 6GY sing 79 n n 
C35 H38 6GY sing 80 n n 
C37 H39 6GY sing 81 n n 
C37 H40 6GY sing 82 n n 
C37 H41 6GY sing 83 n n 
#
_atom_sites.entry_id                     7ZYM 
_atom_sites.fract_transf_matrix[1][1]    0.006845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006845 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 6GY A 1 1101 1 6GY 6GY . 
C 3 HOH A 1 1201 18 HOH HOH . 
C 3 HOH A 2 1202 43 HOH HOH . 
C 3 HOH A 3 1203 45 HOH HOH . 
C 3 HOH A 4 1204 46 HOH HOH . 
C 3 HOH A 5 1205 3 HOH HOH . 
C 3 HOH A 6 1206 44 HOH HOH . 
C 3 HOH A 7 1207 7 HOH HOH . 
C 3 HOH A 8 1208 27 HOH HOH . 
C 3 HOH A 9 1209 12 HOH HOH . 
C 3 HOH A 10 1210 2 HOH HOH . 
C 3 HOH A 11 1211 1 HOH HOH . 
C 3 HOH A 12 1212 11 HOH HOH . 
C 3 HOH A 13 1213 36 HOH HOH . 
C 3 HOH A 14 1214 5 HOH HOH . 
C 3 HOH A 15 1215 19 HOH HOH . 
C 3 HOH A 16 1216 22 HOH HOH . 
C 3 HOH A 17 1217 30 HOH HOH . 
C 3 HOH A 18 1218 47 HOH HOH . 
C 3 HOH A 19 1219 4 HOH HOH . 
C 3 HOH A 20 1220 21 HOH HOH . 
C 3 HOH A 21 1221 23 HOH HOH . 
C 3 HOH A 22 1222 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 6GY . . . B 2 -54.126 0.85 -23.091 1 59.33 ? C1 6GY 1101 A 1 
HETATM 2 C C2 6GY . . . B 2 -53.133 0.251 -22.329 1 60.05 ? C2 6GY 1101 A 1 
HETATM 3 C C3 6GY . . . B 2 -52.503 -4.665 -23.52 1 66.65 ? C3 6GY 1101 A 1 
HETATM 4 C C4 6GY . . . B 2 -54.121 1.126 -20.433 1 58.67 ? C4 6GY 1101 A 1 
HETATM 5 C C6 6GY . . . B 2 -55.124 1.596 -22.462 1 58.38 ? C6 6GY 1101 A 1 
HETATM 6 C C9 6GY . . . B 2 -52.375 -0.387 -18.234 1 63.52 ? C9 6GY 1101 A 1 
HETATM 7 C C10 6GY . . . B 2 -51.377 -0.796 -17.327 1 67.77 ? C10 6GY 1101 A 1 
HETATM 8 C C11 6GY . . . B 2 -51.095 -0.001 -16.213 1 73.82 ? C11 6GY 1101 A 1 
HETATM 9 C C12 6GY . . . B 2 -51.8 1.178 -15.99 1 70.38 ? C12 6GY 1101 A 1 
HETATM 10 C C13 6GY . . . B 2 -52.793 1.588 -16.898 1 64.42 ? C13 6GY 1101 A 1 
HETATM 11 O O14 6GY . . . B 2 -53.505 2.777 -16.693 1 63.29 ? O14 6GY 1101 A 1 
HETATM 12 C C15 6GY . . . B 2 -53.433 3.304 -15.398 1 63.77 ? C15 6GY 1101 A 1 
HETATM 13 C C18 6GY . . . B 2 -50.936 -1.428 -13.057 1 102.63 ? C18 6GY 1101 A 1 
HETATM 14 C C26 6GY . . . B 2 -49.692 -3.099 -9.66 1 127.65 ? C26 6GY 1101 A 1 
HETATM 15 N N3 6GY . . . B 2 -53.159 0.404 -21.007 1 59.37 ? N3 6GY 1101 A 1 
HETATM 16 N N5 6GY . . . B 2 -55.08 1.703 -21.132 1 57.22 ? N5 6GY 1101 A 1 
HETATM 17 N N7 6GY . . . B 2 -54.146 1.287 -18.95 1 59.81 ? N7 6GY 1101 A 1 
HETATM 18 C C8 6GY . . . B 2 -53.076 0.807 -18.02 1 61.55 ? C8 6GY 1101 A 1 
HETATM 19 N N16 6GY . . . B 2 -50.05 -0.407 -15.221 1 84.01 ? N16 6GY 1101 A 1 
HETATM 20 C C17 6GY . . . B 2 -50.458 -0.156 -13.767 1 91.19 ? C17 6GY 1101 A 1 
HETATM 21 C C19 6GY . . . B 2 -50.052 -2.588 -13.179 1 114.19 ? C19 6GY 1101 A 1 
HETATM 22 C C20 6GY . . . B 2 -48.921 -2.37 -14.081 1 101.93 ? C20 6GY 1101 A 1 
HETATM 23 C C21 6GY . . . B 2 -49.363 -1.759 -15.418 1 89.76 ? C21 6GY 1101 A 1 
HETATM 24 N N22 6GY . . . B 2 -49.482 -2.924 -12.051 1 129.83 ? N22 6GY 1101 A 1 
HETATM 25 C C23 6GY . . . B 2 -48.989 -4.2 -12.103 1 118.08 ? C23 6GY 1101 A 1 
HETATM 26 C C24 6GY . . . B 2 -48.279 -4.564 -10.79 1 128.19 ? C24 6GY 1101 A 1 
HETATM 27 N N25 6GY . . . B 2 -48.428 -3.635 -9.781 1 128.6 ? N25 6GY 1101 A 1 
HETATM 28 C C27 6GY . . . B 2 -50.382 -2.904 -11.014 1 124.46 ? C27 6GY 1101 A 1 
HETATM 29 C C28 6GY . . . B 2 -48.067 -4.138 -8.669 1 123.52 ? C28 6GY 1101 A 1 
HETATM 30 N N29 6GY . . . B 2 -52.076 -0.55 -22.999 1 62.73 ? N29 6GY 1101 A 1 
HETATM 31 C C30 6GY . . . B 2 -50.966 -1.224 -22.286 1 64.24 ? C30 6GY 1101 A 1 
HETATM 32 C C31 6GY . . . B 2 -50.533 -2.491 -22.704 1 66.59 ? C31 6GY 1101 A 1 
HETATM 33 C C32 6GY . . . B 2 -49.484 -3.122 -22.04 1 70.02 ? C32 6GY 1101 A 1 
HETATM 34 C C33 6GY . . . B 2 -48.855 -2.498 -20.964 1 69.17 ? C33 6GY 1101 A 1 
HETATM 35 C C34 6GY . . . B 2 -49.28 -1.237 -20.55 1 66.65 ? C34 6GY 1101 A 1 
HETATM 36 C C35 6GY . . . B 2 -50.329 -0.606 -21.216 1 64.07 ? C35 6GY 1101 A 1 
HETATM 37 P P1 6GY . . . B 2 -51.361 -3.358 -24.148 1 66.34 ? P1 6GY 1101 A 1 
HETATM 38 C C37 6GY . . . B 2 -50.073 -4.118 -25.223 1 71.72 ? C37 6GY 1101 A 1 
HETATM 39 O O41 6GY . . . B 2 -52.127 -2.399 -24.933 1 66 ? O41 6GY 1101 A 1 
HETATM 40 CL CL 6GY . . . B 2 -54.125 0.658 -24.867 1 62.79 ? CL 6GY 1101 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#