data_7ZYP # _model_server_result.job_id W3ORIPGNTaUIXIe9-AF7PA _model_server_result.datetime_utc '2024-12-04 22:04:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 7ZYP # _exptl.entry_id 7ZYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.619 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'propan-2-yl 2-[[4-(4-azanylpiperidin-1-yl)-2-methoxy-phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZYP _cell.length_a 141.8 _cell.length_b 141.8 _cell.length_c 141.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H34 N6 O3' _chem_comp.formula_weight 514.619 _chem_comp.id R25 _chem_comp.mon_nstd_flag . _chem_comp.name 'propan-2-yl 2-[[4-(4-azanylpiperidin-1-yl)-2-methoxy-phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C23 R25 sing 302 n n C23 C24 R25 sing 303 n n C23 O22 R25 sing 304 n n O22 C21 R25 sing 305 n n O26 C21 R25 doub 306 n n C31 N30 R25 sing 307 n n C21 C20 R25 sing 308 n n N30 C29 R25 sing 309 n y N30 C32 R25 sing 310 n y C29 C28 R25 doub 311 n y C20 C19 R25 doub 312 n y C20 C27 R25 sing 313 n y C32 C37 R25 doub 314 n y C32 C33 R25 sing 315 n y C28 C27 R25 sing 316 n n C28 C33 R25 sing 317 n y C37 C36 R25 sing 318 n y C19 N18 R25 sing 319 n y C27 N38 R25 doub 320 n y C33 C34 R25 doub 321 n y C36 C35 R25 doub 322 n y N18 C17 R25 doub 323 n y N38 C17 R25 sing 324 n y C34 C35 R25 sing 325 n y C17 N16 R25 sing 326 n n N16 C15 R25 sing 327 n n C14 C15 R25 doub 328 n y C14 C13 R25 sing 329 n y C15 C03 R25 sing 330 n y C13 C05 R25 doub 331 n y C03 O02 R25 sing 332 n n C03 C04 R25 doub 333 n y O02 C01 R25 sing 334 n n C05 C04 R25 sing 335 n y C05 N06 R25 sing 336 n n C07 N06 R25 sing 337 n n C07 C08 R25 sing 338 n n N06 C12 R25 sing 339 n n C08 C09 R25 sing 340 n n C12 C11 R25 sing 341 n n C09 C11 R25 sing 342 n n C09 N10 R25 sing 343 n n C01 H1 R25 sing 344 n n C01 H2 R25 sing 345 n n C01 H3 R25 sing 346 n n C04 H4 R25 sing 347 n n C07 H5 R25 sing 348 n n C07 H6 R25 sing 349 n n C08 H7 R25 sing 350 n n C08 H8 R25 sing 351 n n C09 H9 R25 sing 352 n n C11 H10 R25 sing 353 n n C11 H11 R25 sing 354 n n C12 H12 R25 sing 355 n n C12 H13 R25 sing 356 n n C13 H14 R25 sing 357 n n C14 H15 R25 sing 358 n n C19 H16 R25 sing 359 n n C23 H17 R25 sing 360 n n C24 H18 R25 sing 361 n n C24 H19 R25 sing 362 n n C24 H20 R25 sing 363 n n C25 H21 R25 sing 364 n n C25 H22 R25 sing 365 n n C25 H23 R25 sing 366 n n C29 H24 R25 sing 367 n n C31 H25 R25 sing 368 n n C31 H26 R25 sing 369 n n C31 H27 R25 sing 370 n n C34 H28 R25 sing 371 n n C35 H29 R25 sing 372 n n C36 H30 R25 sing 373 n n C37 H31 R25 sing 374 n n N10 H32 R25 sing 375 n n N10 H33 R25 sing 376 n n N16 H35 R25 sing 377 n n # _atom_sites.entry_id 7ZYP _atom_sites.fract_transf_matrix[1][1] 0.007052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007052 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R25 A 1 1101 1 R25 123 . C 3 MES A 1 1102 2 MES MES . D 4 HOH A 1 1201 1 HOH HOH . D 4 HOH A 2 1202 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 R25 . . . B 2 334.218 279.605 128.458 0.92 78.36 ? C01 R25 1101 A 1 HETATM 2 C C03 R25 . . . B 2 333.439 281.251 127.03 0.92 80.06 ? C03 R25 1101 A 1 HETATM 3 C C04 R25 . . . B 2 332.478 281.683 127.972 0.92 86.4 ? C04 R25 1101 A 1 HETATM 4 C C05 R25 . . . B 2 331.828 282.917 127.778 0.92 85.82 ? C05 R25 1101 A 1 HETATM 5 C C07 R25 . . . B 2 329.346 283.479 128.25 0.92 94.69 ? C07 R25 1101 A 1 HETATM 6 C C08 R25 . . . B 2 328.307 283.911 129.319 0.92 101.02 ? C08 R25 1101 A 1 HETATM 7 C C09 R25 . . . B 2 328.452 283.222 130.589 0.92 105.24 ? C09 R25 1101 A 1 HETATM 8 C C11 R25 . . . B 2 329.817 283.26 131.173 0.92 103.59 ? C11 R25 1101 A 1 HETATM 9 C C12 R25 . . . B 2 330.925 282.796 130.204 0.92 92.57 ? C12 R25 1101 A 1 HETATM 10 C C13 R25 . . . B 2 332.115 283.733 126.654 0.92 80.76 ? C13 R25 1101 A 1 HETATM 11 C C14 R25 . . . B 2 333.067 283.302 125.713 0.92 81.17 ? C14 R25 1101 A 1 HETATM 12 C C15 R25 . . . B 2 333.726 282.062 125.89 0.92 77.43 ? C15 R25 1101 A 1 HETATM 13 C C17 R25 . . . B 2 334.669 281.789 123.468 0.92 74.71 ? C17 R25 1101 A 1 HETATM 14 C C19 R25 . . . B 2 335.592 281.334 121.455 0.92 79.37 ? C19 R25 1101 A 1 HETATM 15 C C20 R25 . . . B 2 334.591 282.138 120.871 0.92 78.44 ? C20 R25 1101 A 1 HETATM 16 C C21 R25 . . . B 2 334.565 282.31 119.26 0.92 82.02 ? C21 R25 1101 A 1 HETATM 17 C C23 R25 . . . B 2 333.345 281.77 117.249 0.92 83.68 ? C23 R25 1101 A 1 HETATM 18 C C24 R25 . . . B 2 332.996 280.268 117.23 0.92 80.75 ? C24 R25 1101 A 1 HETATM 19 C C25 R25 . . . B 2 332.297 282.607 116.558 0.92 81.19 ? C25 R25 1101 A 1 HETATM 20 C C27 R25 . . . B 2 333.636 282.746 121.687 0.92 80.22 ? C27 R25 1101 A 1 HETATM 21 C C28 R25 . . . B 2 332.485 283.654 121.157 0.92 79.61 ? C28 R25 1101 A 1 HETATM 22 C C29 R25 . . . B 2 332.508 284.554 119.993 0.92 82.38 ? C29 R25 1101 A 1 HETATM 23 C C31 R25 . . . B 2 330.935 286.128 118.852 0.92 86.72 ? C31 R25 1101 A 1 HETATM 24 C C32 R25 . . . B 2 330.46 284.728 120.981 0.92 85.05 ? C32 R25 1101 A 1 HETATM 25 C C33 R25 . . . B 2 331.185 283.793 121.775 0.92 82.07 ? C33 R25 1101 A 1 HETATM 26 C C34 R25 . . . B 2 330.592 283.226 122.876 0.92 87.19 ? C34 R25 1101 A 1 HETATM 27 C C35 R25 . . . B 2 329.282 283.56 123.222 0.92 88.89 ? C35 R25 1101 A 1 HETATM 28 C C36 R25 . . . B 2 328.543 284.511 122.414 0.92 92.07 ? C36 R25 1101 A 1 HETATM 29 C C37 R25 . . . B 2 329.123 285.072 121.329 0.92 90.98 ? C37 R25 1101 A 1 HETATM 30 N N06 R25 . . . B 2 330.799 283.393 128.785 0.92 92.01 ? N06 R25 1101 A 1 HETATM 31 N N10 R25 . . . B 2 328.114 281.812 130.362 0.92 105.23 ? N10 R25 1101 A 1 HETATM 32 N N16 R25 . . . B 2 334.744 281.57 124.93 0.92 77.27 ? N16 R25 1101 A 1 HETATM 33 N N18 R25 . . . B 2 335.591 281.195 122.71 0.92 77.33 ? N18 R25 1101 A 1 HETATM 34 N N30 R25 . . . B 2 331.309 285.161 119.902 0.92 84.77 ? N30 R25 1101 A 1 HETATM 35 N N38 R25 . . . B 2 333.716 282.544 122.947 0.92 80.11 ? N38 R25 1101 A 1 HETATM 36 O O02 R25 . . . B 2 334.094 280.037 127.18 0.92 81.56 ? O02 R25 1101 A 1 HETATM 37 O O22 R25 . . . B 2 333.333 282.187 118.635 0.92 84.18 ? O22 R25 1101 A 1 HETATM 38 O O26 R25 . . . B 2 335.627 282.519 118.625 0.92 83.92 ? O26 R25 1101 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 38 #