data_7ZYQ
#
_model_server_result.job_id            ZlxlwO9eV8PX-i76wYkCsA 
_model_server_result.datetime_utc      '2024-12-04 22:32:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zyq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1101}' 
#
_entry.id    7ZYQ 
#
_exptl.entry_id    7ZYQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              562.661 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1H-indol-3-yl)pyrimidine-5-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZYQ 
_cell.length_a            75.89 
_cell.length_b            79.59 
_cell.length_c            89.57 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZYQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,L 1 1 
B,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
_chem_comp.formula           'C33 H34 N6 O3' 
_chem_comp.formula_weight    562.661 
_chem_comp.id                V58 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1H-indol-3-yl)pyrimidine-5-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C17 V58 doub 362 n y 
C16 C15 V58 sing 363 n y 
C27 C26 V58 sing 364 n n 
C27 N19 V58 sing 365 n n 
C17 C18 V58 sing 366 n y 
N14 C15 V58 sing 367 n n 
N14 C13 V58 sing 368 n n 
C26 C22 V58 sing 369 n n 
C22 C21 V58 sing 370 n n 
C22 N23 V58 sing 371 n n 
C15 C29 V58 doub 372 n y 
C20 N19 V58 sing 373 n n 
C20 C21 V58 sing 374 n n 
C13 N32 V58 doub 375 n y 
C13 N12 V58 sing 376 n y 
N32 C33 V58 sing 377 n y 
C18 N19 V58 sing 378 n n 
C18 C28 V58 doub 379 n y 
C35 N36 V58 sing 380 n y 
C35 C34 V58 doub 381 n y 
C24 N23 V58 sing 382 n n 
N12 C11 V58 doub 383 n y 
N36 C37 V58 sing 384 n y 
C29 C28 V58 sing 385 n y 
C29 O30 V58 sing 386 n n 
C33 C34 V58 sing 387 n n 
C33 C10 V58 doub 388 n y 
C34 C38 V58 sing 389 n y 
C11 C10 V58 sing 390 n y 
O01 C02 V58 doub 391 n n 
N23 C25 V58 sing 392 n n 
C37 C38 V58 doub 393 n y 
C37 C42 V58 sing 394 n y 
C10 C02 V58 sing 395 n n 
C38 C39 V58 sing 396 n y 
O30 C31 V58 sing 397 n n 
C42 C41 V58 doub 398 n y 
C02 O03 V58 sing 399 n n 
C39 C40 V58 doub 400 n y 
C41 C40 V58 sing 401 n y 
C09 C08 V58 doub 402 n y 
C09 C04 V58 sing 403 n y 
C08 C07 V58 sing 404 n y 
O03 C04 V58 sing 405 n n 
C04 C05 V58 doub 406 n y 
C07 C06 V58 doub 407 n y 
C05 C06 V58 sing 408 n y 
C17 H1 V58 sing 409 n n 
C20 H2 V58 sing 410 n n 
C20 H3 V58 sing 411 n n 
C21 H4 V58 sing 412 n n 
C21 H5 V58 sing 413 n n 
C22 H6 V58 sing 414 n n 
C24 H7 V58 sing 415 n n 
C24 H8 V58 sing 416 n n 
C24 H9 V58 sing 417 n n 
C26 H10 V58 sing 418 n n 
C26 H11 V58 sing 419 n n 
C28 H12 V58 sing 420 n n 
C05 H13 V58 sing 421 n n 
C06 H14 V58 sing 422 n n 
C07 H15 V58 sing 423 n n 
C08 H16 V58 sing 424 n n 
C09 H17 V58 sing 425 n n 
C11 H18 V58 sing 426 n n 
C16 H19 V58 sing 427 n n 
C25 H20 V58 sing 428 n n 
C25 H21 V58 sing 429 n n 
C25 H22 V58 sing 430 n n 
C27 H23 V58 sing 431 n n 
C27 H24 V58 sing 432 n n 
C31 H25 V58 sing 433 n n 
C31 H26 V58 sing 434 n n 
C31 H27 V58 sing 435 n n 
C35 H28 V58 sing 436 n n 
C39 H29 V58 sing 437 n n 
C40 H30 V58 sing 438 n n 
C41 H31 V58 sing 439 n n 
C42 H32 V58 sing 440 n n 
N14 H33 V58 sing 441 n n 
N36 H35 V58 sing 442 n n 
#
_atom_sites.entry_id                     7ZYQ 
_atom_sites.fract_transf_matrix[1][1]    0.013177 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012564 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 V58 A 1 1101 1001 V58 LIG . 
D 3 SO4 A 1 1102 1 SO4 SO4 . 
E 3 SO4 A 1 1103 2 SO4 SO4 . 
F 4 CL A 1 1104 5 CL CL . 
G 4 CL A 1 1105 6 CL CL . 
H 2 V58 B 1 1101 1001 V58 LIG . 
I 3 SO4 B 1 1102 3 SO4 SO4 . 
J 3 SO4 B 1 1103 4 SO4 SO4 . 
K 5 NA B 1 1104 7 NA NA . 
L 6 HOH A 1 1201 37 HOH HOH . 
L 6 HOH A 2 1202 105 HOH HOH . 
L 6 HOH A 3 1203 39 HOH HOH . 
L 6 HOH A 4 1204 128 HOH HOH . 
L 6 HOH A 5 1205 80 HOH HOH . 
L 6 HOH A 6 1206 57 HOH HOH . 
L 6 HOH A 7 1207 51 HOH HOH . 
L 6 HOH A 8 1208 107 HOH HOH . 
L 6 HOH A 9 1209 56 HOH HOH . 
L 6 HOH A 10 1210 52 HOH HOH . 
L 6 HOH A 11 1211 42 HOH HOH . 
L 6 HOH A 12 1212 25 HOH HOH . 
L 6 HOH A 13 1213 9 HOH HOH . 
L 6 HOH A 14 1214 8 HOH HOH . 
L 6 HOH A 15 1215 93 HOH HOH . 
L 6 HOH A 16 1216 38 HOH HOH . 
L 6 HOH A 17 1217 141 HOH HOH . 
L 6 HOH A 18 1218 127 HOH HOH . 
L 6 HOH A 19 1219 49 HOH HOH . 
L 6 HOH A 20 1220 88 HOH HOH . 
L 6 HOH A 21 1221 13 HOH HOH . 
L 6 HOH A 22 1222 43 HOH HOH . 
L 6 HOH A 23 1223 12 HOH HOH . 
L 6 HOH A 24 1224 23 HOH HOH . 
L 6 HOH A 25 1225 1 HOH HOH . 
L 6 HOH A 26 1226 125 HOH HOH . 
L 6 HOH A 27 1227 44 HOH HOH . 
L 6 HOH A 28 1228 148 HOH HOH . 
L 6 HOH A 29 1229 138 HOH HOH . 
L 6 HOH A 30 1230 5 HOH HOH . 
L 6 HOH A 31 1231 10 HOH HOH . 
L 6 HOH A 32 1232 17 HOH HOH . 
L 6 HOH A 33 1233 7 HOH HOH . 
L 6 HOH A 34 1234 36 HOH HOH . 
L 6 HOH A 35 1235 32 HOH HOH . 
L 6 HOH A 36 1236 3 HOH HOH . 
L 6 HOH A 37 1237 4 HOH HOH . 
L 6 HOH A 38 1238 19 HOH HOH . 
L 6 HOH A 39 1239 2 HOH HOH . 
L 6 HOH A 40 1240 143 HOH HOH . 
L 6 HOH A 41 1241 134 HOH HOH . 
L 6 HOH A 42 1242 111 HOH HOH . 
L 6 HOH A 43 1243 58 HOH HOH . 
L 6 HOH A 44 1244 45 HOH HOH . 
L 6 HOH A 45 1245 147 HOH HOH . 
L 6 HOH A 46 1246 135 HOH HOH . 
L 6 HOH A 47 1247 59 HOH HOH . 
L 6 HOH A 48 1248 103 HOH HOH . 
L 6 HOH A 49 1249 81 HOH HOH . 
L 6 HOH A 50 1250 129 HOH HOH . 
L 6 HOH A 51 1251 122 HOH HOH . 
L 6 HOH A 52 1252 83 HOH HOH . 
L 6 HOH A 53 1253 90 HOH HOH . 
L 6 HOH A 54 1254 109 HOH HOH . 
L 6 HOH A 55 1255 55 HOH HOH . 
L 6 HOH A 56 1256 50 HOH HOH . 
L 6 HOH A 57 1257 47 HOH HOH . 
L 6 HOH A 58 1258 89 HOH HOH . 
L 6 HOH A 59 1259 108 HOH HOH . 
L 6 HOH A 60 1260 110 HOH HOH . 
L 6 HOH A 61 1261 116 HOH HOH . 
L 6 HOH A 62 1262 137 HOH HOH . 
L 6 HOH A 63 1263 117 HOH HOH . 
L 6 HOH A 64 1264 29 HOH HOH . 
L 6 HOH A 65 1265 30 HOH HOH . 
L 6 HOH A 66 1266 131 HOH HOH . 
L 6 HOH A 67 1267 139 HOH HOH . 
L 6 HOH A 68 1268 18 HOH HOH . 
L 6 HOH A 69 1269 140 HOH HOH . 
L 6 HOH A 70 1270 84 HOH HOH . 
L 6 HOH A 71 1271 136 HOH HOH . 
L 6 HOH A 72 1272 48 HOH HOH . 
L 6 HOH A 73 1273 119 HOH HOH . 
M 6 HOH B 1 1201 150 HOH HOH . 
M 6 HOH B 2 1202 31 HOH HOH . 
M 6 HOH B 3 1203 149 HOH HOH . 
M 6 HOH B 4 1204 66 HOH HOH . 
M 6 HOH B 5 1205 33 HOH HOH . 
M 6 HOH B 6 1206 69 HOH HOH . 
M 6 HOH B 7 1207 124 HOH HOH . 
M 6 HOH B 8 1208 112 HOH HOH . 
M 6 HOH B 9 1209 64 HOH HOH . 
M 6 HOH B 10 1210 16 HOH HOH . 
M 6 HOH B 11 1211 106 HOH HOH . 
M 6 HOH B 12 1212 34 HOH HOH . 
M 6 HOH B 13 1213 79 HOH HOH . 
M 6 HOH B 14 1214 74 HOH HOH . 
M 6 HOH B 15 1215 144 HOH HOH . 
M 6 HOH B 16 1216 151 HOH HOH . 
M 6 HOH B 17 1217 85 HOH HOH . 
M 6 HOH B 18 1218 72 HOH HOH . 
M 6 HOH B 19 1219 76 HOH HOH . 
M 6 HOH B 20 1220 22 HOH HOH . 
M 6 HOH B 21 1221 68 HOH HOH . 
M 6 HOH B 22 1222 15 HOH HOH . 
M 6 HOH B 23 1223 35 HOH HOH . 
M 6 HOH B 24 1224 70 HOH HOH . 
M 6 HOH B 25 1225 133 HOH HOH . 
M 6 HOH B 26 1226 123 HOH HOH . 
M 6 HOH B 27 1227 62 HOH HOH . 
M 6 HOH B 28 1228 71 HOH HOH . 
M 6 HOH B 29 1229 11 HOH HOH . 
M 6 HOH B 30 1230 67 HOH HOH . 
M 6 HOH B 31 1231 40 HOH HOH . 
M 6 HOH B 32 1232 65 HOH HOH . 
M 6 HOH B 33 1233 27 HOH HOH . 
M 6 HOH B 34 1234 114 HOH HOH . 
M 6 HOH B 35 1235 24 HOH HOH . 
M 6 HOH B 36 1236 97 HOH HOH . 
M 6 HOH B 37 1237 145 HOH HOH . 
M 6 HOH B 38 1238 126 HOH HOH . 
M 6 HOH B 39 1239 63 HOH HOH . 
M 6 HOH B 40 1240 21 HOH HOH . 
M 6 HOH B 41 1241 113 HOH HOH . 
M 6 HOH B 42 1242 26 HOH HOH . 
M 6 HOH B 43 1243 78 HOH HOH . 
M 6 HOH B 44 1244 75 HOH HOH . 
M 6 HOH B 45 1245 28 HOH HOH . 
M 6 HOH B 46 1246 99 HOH HOH . 
M 6 HOH B 47 1247 95 HOH HOH . 
M 6 HOH B 48 1248 101 HOH HOH . 
M 6 HOH B 49 1249 120 HOH HOH . 
M 6 HOH B 50 1250 96 HOH HOH . 
M 6 HOH B 51 1251 132 HOH HOH . 
M 6 HOH B 52 1252 77 HOH HOH . 
M 6 HOH B 53 1253 102 HOH HOH . 
M 6 HOH B 54 1254 100 HOH HOH . 
M 6 HOH B 55 1255 20 HOH HOH . 
M 6 HOH B 56 1256 130 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 V58 . . . C 2 41.794 -9.637 -2.854 1 36.3 ? C10 V58 1101 A 1 
HETATM 2 N N12 V58 . . . C 2 40.273 -11.539 -3.232 1 36.64 ? N12 V58 1101 A 1 
HETATM 3 C C13 V58 . . . C 2 41.359 -12.353 -3.477 1 37.23 ? C13 V58 1101 A 1 
HETATM 4 C C15 V58 . . . C 2 42.024 -14.893 -3.693 1 40.43 ? C15 V58 1101 A 1 
HETATM 5 C C17 V58 . . . C 2 44.311 -15.869 -4.024 1 42.9 ? C17 V58 1101 A 1 
HETATM 6 C C20 V58 . . . C 2 44.675 -19.541 -4.042 1 53.22 ? C20 V58 1101 A 1 
HETATM 7 C C21 V58 . . . C 2 45.841 -20.549 -4.151 1 57.39 ? C21 V58 1101 A 1 
HETATM 8 C C22 V58 . . . C 2 46.905 -20.394 -3.06 1 66.05 ? C22 V58 1101 A 1 
HETATM 9 C C24 V58 . . . C 2 48.71 -21.195 -4.556 1 65.19 ? C24 V58 1101 A 1 
HETATM 10 C C26 V58 . . . C 2 47.475 -18.962 -3.147 1 62.05 ? C26 V58 1101 A 1 
HETATM 11 C C28 V58 . . . C 2 42.672 -17.231 -3.049 1 42.91 ? C28 V58 1101 A 1 
HETATM 12 C C02 V58 . . . C 2 41.946 -8.431 -2.585 1 37.43 ? C02 V58 1101 A 1 
HETATM 13 C C04 V58 . . . C 2 42.917 -6.672 -1.216 1 36.76 ? C04 V58 1101 A 1 
HETATM 14 C C05 V58 . . . C 2 42.197 -6.26 -0.084 1 36.46 ? C05 V58 1101 A 1 
HETATM 15 C C06 V58 . . . C 2 42.259 -4.94 0.352 1 35.67 ? C06 V58 1101 A 1 
HETATM 16 C C07 V58 . . . C 2 43.033 -3.999 -0.322 1 37.93 ? C07 V58 1101 A 1 
HETATM 17 C C08 V58 . . . C 2 43.746 -4.403 -1.445 1 39.33 ? C08 V58 1101 A 1 
HETATM 18 C C09 V58 . . . C 2 43.696 -5.726 -1.896 1 37.32 ? C09 V58 1101 A 1 
HETATM 19 C C11 V58 . . . C 2 40.517 -10.232 -2.952 1 34.64 ? C11 V58 1101 A 1 
HETATM 20 C C16 V58 . . . C 2 43.375 -14.824 -4.112 1 41.65 ? C16 V58 1101 A 1 
HETATM 21 C C18 V58 . . . C 2 44.019 -17.151 -3.496 1 46.33 ? C18 V58 1101 A 1 
HETATM 22 C C25 V58 . . . C 2 47.414 -22.796 -3.276 1 75.93 ? C25 V58 1101 A 1 
HETATM 23 C C27 V58 . . . C 2 46.454 -17.882 -3.593 1 54.19 ? C27 V58 1101 A 1 
HETATM 24 C C29 V58 . . . C 2 41.721 -16.175 -3.129 1 41.05 ? C29 V58 1101 A 1 
HETATM 25 C C31 V58 . . . C 2 39.986 -17.727 -2.581 1 41.86 ? C31 V58 1101 A 1 
HETATM 26 C C33 V58 . . . C 2 42.907 -10.513 -3.12 1 38.31 ? C33 V58 1101 A 1 
HETATM 27 C C34 V58 . . . C 2 44.349 -10.013 -3.067 1 40.4 ? C34 V58 1101 A 1 
HETATM 28 C C35 V58 . . . C 2 44.823 -8.751 -3.438 1 38.85 ? C35 V58 1101 A 1 
HETATM 29 C C37 V58 . . . C 2 46.706 -9.89 -2.84 1 41.19 ? C37 V58 1101 A 1 
HETATM 30 C C38 V58 . . . C 2 45.572 -10.753 -2.708 1 43 ? C38 V58 1101 A 1 
HETATM 31 C C39 V58 . . . C 2 45.858 -12.054 -2.267 1 42.12 ? C39 V58 1101 A 1 
HETATM 32 C C40 V58 . . . C 2 47.146 -12.467 -1.981 1 43.86 ? C40 V58 1101 A 1 
HETATM 33 C C41 V58 . . . C 2 48.239 -11.594 -2.12 1 45.33 ? C41 V58 1101 A 1 
HETATM 34 C C42 V58 . . . C 2 48.03 -10.3 -2.549 1 43.39 ? C42 V58 1101 A 1 
HETATM 35 N N14 V58 . . . C 2 41.101 -13.757 -3.77 1 42.72 ? N14 V58 1101 A 1 
HETATM 36 N N19 V58 . . . C 2 45.011 -18.239 -3.381 1 49.06 ? N19 V58 1101 A 1 
HETATM 37 N N23 V58 . . . C 2 48.005 -21.427 -3.263 1 69.72 ? N23 V58 1101 A 1 
HETATM 38 N N32 V58 . . . C 2 42.666 -11.83 -3.405 1 37.21 ? N32 V58 1101 A 1 
HETATM 39 N N36 V58 . . . C 2 46.217 -8.659 -3.284 1 42.28 ? N36 V58 1101 A 1 
HETATM 40 O O01 V58 . . . C 2 41.253 -7.542 -3.115 1 35.9 ? O01 V58 1101 A 1 
HETATM 41 O O03 V58 . . . C 2 42.814 -8.008 -1.6 1 35.08 ? O03 V58 1101 A 1 
HETATM 42 O O30 V58 . . . C 2 40.441 -16.387 -2.671 1 41.65 ? O30 V58 1101 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           408 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           42 
#