data_7ZYV # _model_server_result.job_id DdnXxAdHSEKfzF_z00KEjw _model_server_result.datetime_utc '2024-11-26 19:02:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":301}' # _entry.id 7ZYV # _exptl.entry_id 7ZYV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZYV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 S N N ? 10 T N N ? 10 IA N N ? 10 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 163 D CYS 112 1_555 D SG CYS 178 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 L SG CYS 163 L CYS 112 1_555 L SG CYS 178 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 U CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 Z C52 PL9 . B PL9 401 1_555 TA C35 PL9 . K PL9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 C SG CYS 59 C CYS 24 1_555 DA CBC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 I SG CYS 35 I CYS 35 1_555 KA CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 K SG CYS 59 K CYS 24 1_555 SA CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 C N TYR 36 C TYR 1 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 C NE2 HIS 60 C HIS 25 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 D SG CYS 158 D CYS 107 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D ND1 HIS 160 D HIS 109 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc9 D SG CYS 176 D CYS 125 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 D ND1 HIS 179 D HIS 128 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 I NE2 HIS 86 I HIS 86 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 I NE2 HIS 100 I HIS 100 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc13 I NE2 HIS 187 I HIS 187 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 I NE2 HIS 202 I HIS 202 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc15 K N TYR 36 K TYR 1 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 K NE2 HIS 60 K HIS 25 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 L SG CYS 158 L CYS 107 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 L ND1 HIS 160 L HIS 109 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc19 L SG CYS 176 L CYS 125 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 L ND1 HIS 179 L HIS 128 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 7ZYV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM A 1 301 301 HEM HEM . T 10 HEM A 1 302 302 HEM HEM . U 11 HEC A 1 303 303 HEC HEC . V 12 CLA A 1 304 304 CLA CLA . W 13 UMQ A 1 305 1801 UMQ UMQ . X 13 UMQ A 1 306 1901 UMQ UMQ . Y 14 PL9 A 1 307 401 PL9 PL9 . Z 14 PL9 B 1 401 401 PL9 PL9 . AA 14 PL9 B 1 402 301 PL9 PL9 . BA 13 UMQ B 1 403 601 UMQ UMQ . CA 13 UMQ B 1 404 701 UMQ UMQ . DA 11 HEC C 1 301 301 HEC HEC . EA 15 SQD D 1 201 201 SQD SQD . FA 16 FES D 1 202 201 FES FES . GA 17 BCR F 1 101 101 BCR BCR . HA 13 UMQ H 1 201 201 UMQ UMQ . IA 10 HEM I 1 301 301 HEM HEM . JA 10 HEM I 1 302 302 HEM HEM . KA 11 HEC I 1 303 303 HEC HEC . LA 12 CLA I 1 304 304 CLA CLA . MA 13 UMQ I 1 305 901 UMQ UMQ . NA 13 UMQ I 1 306 1001 UMQ UMQ . OA 14 PL9 J 1 401 401 PL9 PL9 . PA 14 PL9 J 1 402 201 PL9 PL9 . QA 13 UMQ J 1 403 601 UMQ UMQ . RA 13 UMQ J 1 404 701 UMQ UMQ . SA 11 HEC K 1 301 301 HEC HEC . TA 14 PL9 K 1 302 301 PL9 PL9 . UA 15 SQD L 1 401 401 SQD SQD . VA 16 FES L 1 402 201 FES FES . WA 17 BCR P 1 101 305 BCR BCR . XA 13 UMQ P 1 102 101 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . IA 10 147.924 158.154 144.819 1 53.09 ? CHA HEM 301 I 1 HETATM 2 C CHB HEM . . . IA 10 151.756 157.05 147.578 1 53.09 ? CHB HEM 301 I 1 HETATM 3 C CHC HEM . . . IA 10 149.346 158.571 151.504 1 53.09 ? CHC HEM 301 I 1 HETATM 4 C CHD HEM . . . IA 10 145.532 159.736 148.736 1 53.09 ? CHD HEM 301 I 1 HETATM 5 C C1A HEM . . . IA 10 149.172 157.73 145.214 1 53.09 ? C1A HEM 301 I 1 HETATM 6 C C2A HEM . . . IA 10 150.216 157.225 144.349 1 53.09 ? C2A HEM 301 I 1 HETATM 7 C C3A HEM . . . IA 10 151.269 156.921 145.108 1 53.09 ? C3A HEM 301 I 1 HETATM 8 C C4A HEM . . . IA 10 150.936 157.221 146.484 1 53.09 ? C4A HEM 301 I 1 HETATM 9 C CMA HEM . . . IA 10 152.611 156.348 144.607 1 53.09 ? CMA HEM 301 I 1 HETATM 10 C CAA HEM . . . IA 10 150.12 157.066 142.816 1 53.09 ? CAA HEM 301 I 1 HETATM 11 C CBA HEM . . . IA 10 149.428 155.748 142.493 1 53.09 ? CBA HEM 301 I 1 HETATM 12 C CGA HEM . . . IA 10 148.078 156.012 141.884 1 53.09 ? CGA HEM 301 I 1 HETATM 13 O O1A HEM . . . IA 10 147.258 155.065 141.819 1 53.09 ? O1A HEM 301 I 1 HETATM 14 O O2A HEM . . . IA 10 147.815 157.169 141.474 1 53.09 ? O2A HEM 301 I 1 HETATM 15 C C1B HEM . . . IA 10 151.455 157.401 148.876 1 53.09 ? C1B HEM 301 I 1 HETATM 16 C C2B HEM . . . IA 10 152.358 157.348 150.006 1 53.09 ? C2B HEM 301 I 1 HETATM 17 C C3B HEM . . . IA 10 151.693 157.768 151.089 1 53.09 ? C3B HEM 301 I 1 HETATM 18 C C4B HEM . . . IA 10 150.345 158.101 150.682 1 53.09 ? C4B HEM 301 I 1 HETATM 19 C CMB HEM . . . IA 10 153.829 156.883 149.939 1 53.09 ? CMB HEM 301 I 1 HETATM 20 C CAB HEM . . . IA 10 152.216 157.894 152.539 1 53.09 ? CAB HEM 301 I 1 HETATM 21 C CBB HEM . . . IA 10 153.465 157.566 152.878 1 53.09 ? CBB HEM 301 I 1 HETATM 22 C C1C HEM . . . IA 10 148.104 159.012 151.105 1 53.09 ? C1C HEM 301 I 1 HETATM 23 C C2C HEM . . . IA 10 147.066 159.529 151.969 1 53.09 ? C2C HEM 301 I 1 HETATM 24 C C3C HEM . . . IA 10 146.014 159.853 151.207 1 53.09 ? C3C HEM 301 I 1 HETATM 25 C C4C HEM . . . IA 10 146.349 159.549 149.832 1 53.09 ? C4C HEM 301 I 1 HETATM 26 C CMC HEM . . . IA 10 147.19 159.672 153.502 1 53.09 ? CMC HEM 301 I 1 HETATM 27 C CAC HEM . . . IA 10 144.661 160.444 151.664 1 53.09 ? CAC HEM 301 I 1 HETATM 28 C CBC HEM . . . IA 10 144.383 160.678 152.948 1 53.09 ? CBC HEM 301 I 1 HETATM 29 C C1D HEM . . . IA 10 145.825 159.367 147.441 1 53.09 ? C1D HEM 301 I 1 HETATM 30 C C2D HEM . . . IA 10 144.923 159.402 146.308 1 53.09 ? C2D HEM 301 I 1 HETATM 31 C C3D HEM . . . IA 10 145.589 158.968 145.235 1 53.09 ? C3D HEM 301 I 1 HETATM 32 C C4D HEM . . . IA 10 146.934 158.638 145.644 1 53.09 ? C4D HEM 301 I 1 HETATM 33 C CMD HEM . . . IA 10 143.452 159.866 146.338 1 53.09 ? CMD HEM 301 I 1 HETATM 34 C CAD HEM . . . IA 10 145.051 158.822 143.796 1 53.09 ? CAD HEM 301 I 1 HETATM 35 C CBD HEM . . . IA 10 143.995 157.726 143.733 1 53.09 ? CBD HEM 301 I 1 HETATM 36 C CGD HEM . . . IA 10 143.834 157.267 142.309 1 53.09 ? CGD HEM 301 I 1 HETATM 37 O O1D HEM . . . IA 10 144.865 157.041 141.627 1 53.09 ? O1D HEM 301 I 1 HETATM 38 O O2D HEM . . . IA 10 142.673 157.115 141.856 1 53.09 ? O2D HEM 301 I 1 HETATM 39 N NA HEM . . . IA 10 149.647 157.714 146.509 1 53.09 ? NA HEM 301 I 1 HETATM 40 N NB HEM . . . IA 10 150.236 157.865 149.326 1 53.09 ? NB HEM 301 I 1 HETATM 41 N NC HEM . . . IA 10 147.631 159.038 149.808 1 53.09 ? NC HEM 301 I 1 HETATM 42 N ND HEM . . . IA 10 147.044 158.893 146.996 1 53.09 ? ND HEM 301 I 1 HETATM 43 FE FE HEM . . . IA 10 148.623 158.34 148.165 1 53.09 ? FE HEM 301 I 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #