data_7ZYV # _model_server_result.job_id Jw_bHn7OoNh9mFU5axENiQ _model_server_result.datetime_utc '2024-11-23 03:40:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":304}' # _entry.id 7ZYV # _exptl.entry_id 7ZYV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 893.489 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZYV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 V N N ? 12 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 163 D CYS 112 1_555 D SG CYS 178 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 L SG CYS 163 L CYS 112 1_555 L SG CYS 178 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 U CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 Z C52 PL9 . B PL9 401 1_555 TA C35 PL9 . K PL9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 C SG CYS 59 C CYS 24 1_555 DA CBC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 I SG CYS 35 I CYS 35 1_555 KA CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 K SG CYS 59 K CYS 24 1_555 SA CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 C N TYR 36 C TYR 1 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 C NE2 HIS 60 C HIS 25 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 D SG CYS 158 D CYS 107 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D ND1 HIS 160 D HIS 109 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc9 D SG CYS 176 D CYS 125 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 D ND1 HIS 179 D HIS 128 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 I NE2 HIS 86 I HIS 86 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 I NE2 HIS 100 I HIS 100 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc13 I NE2 HIS 187 I HIS 187 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 I NE2 HIS 202 I HIS 202 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc15 K N TYR 36 K TYR 1 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 K NE2 HIS 60 K HIS 25 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 L SG CYS 158 L CYS 107 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 L ND1 HIS 160 L HIS 109 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc19 L SG CYS 176 L CYS 125 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 L ND1 HIS 179 L HIS 128 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZYV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM A 1 301 301 HEM HEM . T 10 HEM A 1 302 302 HEM HEM . U 11 HEC A 1 303 303 HEC HEC . V 12 CLA A 1 304 304 CLA CLA . W 13 UMQ A 1 305 1801 UMQ UMQ . X 13 UMQ A 1 306 1901 UMQ UMQ . Y 14 PL9 A 1 307 401 PL9 PL9 . Z 14 PL9 B 1 401 401 PL9 PL9 . AA 14 PL9 B 1 402 301 PL9 PL9 . BA 13 UMQ B 1 403 601 UMQ UMQ . CA 13 UMQ B 1 404 701 UMQ UMQ . DA 11 HEC C 1 301 301 HEC HEC . EA 15 SQD D 1 201 201 SQD SQD . FA 16 FES D 1 202 201 FES FES . GA 17 BCR F 1 101 101 BCR BCR . HA 13 UMQ H 1 201 201 UMQ UMQ . IA 10 HEM I 1 301 301 HEM HEM . JA 10 HEM I 1 302 302 HEM HEM . KA 11 HEC I 1 303 303 HEC HEC . LA 12 CLA I 1 304 304 CLA CLA . MA 13 UMQ I 1 305 901 UMQ UMQ . NA 13 UMQ I 1 306 1001 UMQ UMQ . OA 14 PL9 J 1 401 401 PL9 PL9 . PA 14 PL9 J 1 402 201 PL9 PL9 . QA 13 UMQ J 1 403 601 UMQ UMQ . RA 13 UMQ J 1 404 701 UMQ UMQ . SA 11 HEC K 1 301 301 HEC HEC . TA 14 PL9 K 1 302 301 PL9 PL9 . UA 15 SQD L 1 401 401 SQD SQD . VA 16 FES L 1 402 201 FES FES . WA 17 BCR P 1 101 305 BCR BCR . XA 13 UMQ P 1 102 101 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . LA 12 131.594 174.117 160.339 1 72.38 ? MG CLA 304 I 1 HETATM 2 C CHA CLA . . . LA 12 133.262 172.481 157.776 1 72.38 ? CHA CLA 304 I 1 HETATM 3 C CHB CLA . . . LA 12 132.834 171.867 162.573 1 72.38 ? CHB CLA 304 I 1 HETATM 4 C CHC CLA . . . LA 12 130.065 175.874 162.861 1 72.38 ? CHC CLA 304 I 1 HETATM 5 C CHD CLA . . . LA 12 130.356 176.449 157.978 1 72.38 ? CHD CLA 304 I 1 HETATM 6 N NA CLA . . . LA 12 132.821 172.435 160.168 1 72.38 ? NA CLA 304 I 1 HETATM 7 C C1A CLA . . . LA 12 133.422 171.921 159.013 1 72.38 ? C1A CLA 304 I 1 HETATM 8 C C2A CLA . . . LA 12 134.251 170.682 159.328 1 72.38 ? C2A CLA 304 I 1 HETATM 9 C C3A CLA . . . LA 12 133.989 170.441 160.833 1 72.38 ? C3A CLA 304 I 1 HETATM 10 C C4A CLA . . . LA 12 133.161 171.66 161.245 1 72.38 ? C4A CLA 304 I 1 HETATM 11 C CMA CLA . . . LA 12 133.272 169.141 161.088 1 72.38 ? CMA CLA 304 I 1 HETATM 12 C CAA CLA . . . LA 12 135.717 170.983 159.085 1 72.38 ? CAA CLA 304 I 1 HETATM 13 C CBA CLA . . . LA 12 136.425 169.846 158.382 1 72.38 ? CBA CLA 304 I 1 HETATM 14 C CGA CLA . . . LA 12 137.792 169.655 158.961 1 72.38 ? CGA CLA 304 I 1 HETATM 15 O O1A CLA . . . LA 12 138.114 169.051 159.985 1 72.38 ? O1A CLA 304 I 1 HETATM 16 O O2A CLA . . . LA 12 138.777 170.25 158.224 1 72.38 ? O2A CLA 304 I 1 HETATM 17 N NB CLA . . . LA 12 131.433 173.882 162.331 1 72.38 ? NB CLA 304 I 1 HETATM 18 C C1B CLA . . . LA 12 132.081 172.946 163.07 1 72.38 ? C1B CLA 304 I 1 HETATM 19 C C2B CLA . . . LA 12 131.882 173.223 164.521 1 72.38 ? C2B CLA 304 I 1 HETATM 20 C C3B CLA . . . LA 12 131.1 174.352 164.606 1 72.38 ? C3B CLA 304 I 1 HETATM 21 C C4B CLA . . . LA 12 130.802 174.786 163.215 1 72.38 ? C4B CLA 304 I 1 HETATM 22 C CMB CLA . . . LA 12 132.455 172.395 165.58 1 72.38 ? CMB CLA 304 I 1 HETATM 23 C CAB CLA . . . LA 12 130.608 175.067 165.753 1 72.38 ? CAB CLA 304 I 1 HETATM 24 C CBB CLA . . . LA 12 131.077 174.944 166.994 1 72.38 ? CBB CLA 304 I 1 HETATM 25 N NC CLA . . . LA 12 130.397 175.829 160.394 1 72.38 ? NC CLA 304 I 1 HETATM 26 C C1C CLA . . . LA 12 129.869 176.363 161.538 1 72.38 ? C1C CLA 304 I 1 HETATM 27 C C2C CLA . . . LA 12 129.087 177.549 161.218 1 72.38 ? C2C CLA 304 I 1 HETATM 28 C C3C CLA . . . LA 12 129.179 177.729 159.839 1 72.38 ? C3C CLA 304 I 1 HETATM 29 C C4C CLA . . . LA 12 130.005 176.64 159.327 1 72.38 ? C4C CLA 304 I 1 HETATM 30 C CMC CLA . . . LA 12 128.378 178.372 162.197 1 72.38 ? CMC CLA 304 I 1 HETATM 31 C CAC CLA . . . LA 12 128.558 178.802 159.047 1 72.38 ? CAC CLA 304 I 1 HETATM 32 C CBC CLA . . . LA 12 127.06 178.651 158.945 1 72.38 ? CBC CLA 304 I 1 HETATM 33 N ND CLA . . . LA 12 131.715 174.438 158.346 1 72.38 ? ND CLA 304 I 1 HETATM 34 C C1D CLA . . . LA 12 131.154 175.431 157.5 1 72.38 ? C1D CLA 304 I 1 HETATM 35 C C2D CLA . . . LA 12 131.589 175.174 156.108 1 72.38 ? C2D CLA 304 I 1 HETATM 36 C C3D CLA . . . LA 12 132.413 174.065 156.159 1 72.38 ? C3D CLA 304 I 1 HETATM 37 C C4D CLA . . . LA 12 132.452 173.644 157.572 1 72.38 ? C4D CLA 304 I 1 HETATM 38 C CMD CLA . . . LA 12 131.21 175.987 154.955 1 72.38 ? CMD CLA 304 I 1 HETATM 39 C CAD CLA . . . LA 12 133.238 173.139 155.406 1 72.38 ? CAD CLA 304 I 1 HETATM 40 O OBD CLA . . . LA 12 133.49 173.116 154.208 1 72.38 ? OBD CLA 304 I 1 HETATM 41 C CBD CLA . . . LA 12 133.804 172.097 156.419 1 72.38 ? CBD CLA 304 I 1 HETATM 42 C CGD CLA . . . LA 12 133.412 170.702 156.026 1 72.38 ? CGD CLA 304 I 1 HETATM 43 O O1D CLA . . . LA 12 132.275 170.254 155.873 1 72.38 ? O1D CLA 304 I 1 HETATM 44 O O2D CLA . . . LA 12 134.464 169.865 155.818 1 72.38 ? O2D CLA 304 I 1 HETATM 45 C CED CLA . . . LA 12 134.194 168.621 155.174 1 72.38 ? CED CLA 304 I 1 HETATM 46 C C1 CLA . . . LA 12 138.996 169.721 156.901 1 72.38 ? C1 CLA 304 I 1 HETATM 47 C C2 CLA . . . LA 12 138.977 170.877 155.971 1 72.38 ? C2 CLA 304 I 1 HETATM 48 C C3 CLA . . . LA 12 138.428 170.808 154.749 1 72.38 ? C3 CLA 304 I 1 HETATM 49 C C4 CLA . . . LA 12 137.802 169.566 154.24 1 72.38 ? C4 CLA 304 I 1 HETATM 50 C C5 CLA . . . LA 12 138.424 171.987 153.84 1 72.38 ? C5 CLA 304 I 1 HETATM 51 C C6 CLA . . . LA 12 139.452 173.03 154.233 1 72.38 ? C6 CLA 304 I 1 HETATM 52 C C7 CLA . . . LA 12 139.482 174.153 153.218 1 72.38 ? C7 CLA 304 I 1 HETATM 53 C C8 CLA . . . LA 12 140.624 175.123 153.482 1 72.38 ? C8 CLA 304 I 1 HETATM 54 C C9 CLA . . . LA 12 140.709 176.16 152.383 1 72.38 ? C9 CLA 304 I 1 HETATM 55 C C10 CLA . . . LA 12 141.943 174.372 153.598 1 72.38 ? C10 CLA 304 I 1 HETATM 56 C C11 CLA . . . LA 12 142.563 174.13 152.241 1 72.38 ? C11 CLA 304 I 1 HETATM 57 C C12 CLA . . . LA 12 143.875 173.382 152.356 1 72.38 ? C12 CLA 304 I 1 HETATM 58 C C13 CLA . . . LA 12 144.588 173.304 151.014 1 72.38 ? C13 CLA 304 I 1 HETATM 59 C C14 CLA . . . LA 12 144.431 171.929 150.399 1 72.38 ? C14 CLA 304 I 1 HETATM 60 C C15 CLA . . . LA 12 146.062 173.664 151.153 1 72.38 ? C15 CLA 304 I 1 HETATM 61 C C16 CLA . . . LA 12 146.223 175.053 151.736 1 72.38 ? C16 CLA 304 I 1 HETATM 62 C C17 CLA . . . LA 12 146.902 175.031 153.089 1 72.38 ? C17 CLA 304 I 1 HETATM 63 C C18 CLA . . . LA 12 148.389 175.34 152.977 1 72.38 ? C18 CLA 304 I 1 HETATM 64 C C19 CLA . . . LA 12 148.61 176.773 152.541 1 72.38 ? C19 CLA 304 I 1 HETATM 65 C C20 CLA . . . LA 12 149.085 175.088 154.297 1 72.38 ? C20 CLA 304 I 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 65 #