data_7ZYV # _model_server_result.job_id 2TWq2D2tG5eFLeFlle6zPQ _model_server_result.datetime_utc '2024-11-26 18:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":304}' # _entry.id 7ZYV # _exptl.entry_id 7ZYV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 893.489 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZYV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 V N N ? 12 LA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 163 D CYS 112 1_555 D SG CYS 178 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 L SG CYS 163 L CYS 112 1_555 L SG CYS 178 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 U CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 Z C52 PL9 . B PL9 401 1_555 TA C35 PL9 . K PL9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 C SG CYS 59 C CYS 24 1_555 DA CBC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 I SG CYS 35 I CYS 35 1_555 KA CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 K SG CYS 59 K CYS 24 1_555 SA CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 C N TYR 36 C TYR 1 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 C NE2 HIS 60 C HIS 25 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 D SG CYS 158 D CYS 107 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D ND1 HIS 160 D HIS 109 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc9 D SG CYS 176 D CYS 125 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 D ND1 HIS 179 D HIS 128 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 I NE2 HIS 86 I HIS 86 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 I NE2 HIS 100 I HIS 100 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc13 I NE2 HIS 187 I HIS 187 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 I NE2 HIS 202 I HIS 202 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc15 K N TYR 36 K TYR 1 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 K NE2 HIS 60 K HIS 25 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 L SG CYS 158 L CYS 107 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 L ND1 HIS 160 L HIS 109 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc19 L SG CYS 176 L CYS 125 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 L ND1 HIS 179 L HIS 128 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZYV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM A 1 301 301 HEM HEM . T 10 HEM A 1 302 302 HEM HEM . U 11 HEC A 1 303 303 HEC HEC . V 12 CLA A 1 304 304 CLA CLA . W 13 UMQ A 1 305 1801 UMQ UMQ . X 13 UMQ A 1 306 1901 UMQ UMQ . Y 14 PL9 A 1 307 401 PL9 PL9 . Z 14 PL9 B 1 401 401 PL9 PL9 . AA 14 PL9 B 1 402 301 PL9 PL9 . BA 13 UMQ B 1 403 601 UMQ UMQ . CA 13 UMQ B 1 404 701 UMQ UMQ . DA 11 HEC C 1 301 301 HEC HEC . EA 15 SQD D 1 201 201 SQD SQD . FA 16 FES D 1 202 201 FES FES . GA 17 BCR F 1 101 101 BCR BCR . HA 13 UMQ H 1 201 201 UMQ UMQ . IA 10 HEM I 1 301 301 HEM HEM . JA 10 HEM I 1 302 302 HEM HEM . KA 11 HEC I 1 303 303 HEC HEC . LA 12 CLA I 1 304 304 CLA CLA . MA 13 UMQ I 1 305 901 UMQ UMQ . NA 13 UMQ I 1 306 1001 UMQ UMQ . OA 14 PL9 J 1 401 401 PL9 PL9 . PA 14 PL9 J 1 402 201 PL9 PL9 . QA 13 UMQ J 1 403 601 UMQ UMQ . RA 13 UMQ J 1 404 701 UMQ UMQ . SA 11 HEC K 1 301 301 HEC HEC . TA 14 PL9 K 1 302 301 PL9 PL9 . UA 15 SQD L 1 401 401 SQD SQD . VA 16 FES L 1 402 201 FES FES . WA 17 BCR P 1 101 305 BCR BCR . XA 13 UMQ P 1 102 101 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . V 12 188.279 145.784 160.341 1 72.32 ? MG CLA 304 A 1 HETATM 2 C CHA CLA . . . V 12 186.615 147.422 157.778 1 72.32 ? CHA CLA 304 A 1 HETATM 3 C CHB CLA . . . V 12 187.046 148.039 162.574 1 72.32 ? CHB CLA 304 A 1 HETATM 4 C CHC CLA . . . V 12 189.806 144.026 162.865 1 72.32 ? CHC CLA 304 A 1 HETATM 5 C CHD CLA . . . V 12 189.512 143.447 157.982 1 72.32 ? CHD CLA 304 A 1 HETATM 6 N NA CLA . . . V 12 187.057 147.47 160.17 1 72.32 ? NA CLA 304 A 1 HETATM 7 C C1A CLA . . . V 12 186.456 147.983 159.015 1 72.32 ? C1A CLA 304 A 1 HETATM 8 C C2A CLA . . . V 12 185.631 149.225 159.329 1 72.32 ? C2A CLA 304 A 1 HETATM 9 C C3A CLA . . . V 12 185.894 149.466 160.833 1 72.32 ? C3A CLA 304 A 1 HETATM 10 C C4A CLA . . . V 12 186.719 148.246 161.246 1 72.32 ? C4A CLA 304 A 1 HETATM 11 C CMA CLA . . . V 12 186.615 150.765 161.087 1 72.32 ? CMA CLA 304 A 1 HETATM 12 C CAA CLA . . . V 12 184.164 148.927 159.087 1 72.32 ? CAA CLA 304 A 1 HETATM 13 C CBA CLA . . . V 12 183.459 150.066 158.383 1 72.32 ? CBA CLA 304 A 1 HETATM 14 C CGA CLA . . . V 12 182.092 150.26 158.963 1 72.32 ? CGA CLA 304 A 1 HETATM 15 O O1A CLA . . . V 12 181.772 150.866 159.986 1 72.32 ? O1A CLA 304 A 1 HETATM 16 O O2A CLA . . . V 12 181.105 149.667 158.226 1 72.32 ? O2A CLA 304 A 1 HETATM 17 N NB CLA . . . V 12 188.442 146.021 162.333 1 72.32 ? NB CLA 304 A 1 HETATM 18 C C1B CLA . . . V 12 187.797 146.959 163.072 1 72.32 ? C1B CLA 304 A 1 HETATM 19 C C2B CLA . . . V 12 187.996 146.682 164.523 1 72.32 ? C2B CLA 304 A 1 HETATM 20 C C3B CLA . . . V 12 188.775 145.552 164.609 1 72.32 ? C3B CLA 304 A 1 HETATM 21 C C4B CLA . . . V 12 189.071 145.116 163.218 1 72.32 ? C4B CLA 304 A 1 HETATM 22 C CMB CLA . . . V 12 187.425 147.513 165.581 1 72.32 ? CMB CLA 304 A 1 HETATM 23 C CAB CLA . . . V 12 189.266 144.836 165.756 1 72.32 ? CAB CLA 304 A 1 HETATM 24 C CBB CLA . . . V 12 188.797 144.962 166.997 1 72.32 ? CBB CLA 304 A 1 HETATM 25 N NC CLA . . . V 12 189.473 144.07 160.398 1 72.32 ? NC CLA 304 A 1 HETATM 26 C C1C CLA . . . V 12 190 143.536 161.541 1 72.32 ? C1C CLA 304 A 1 HETATM 27 C C2C CLA . . . V 12 190.779 142.347 161.222 1 72.32 ? C2C CLA 304 A 1 HETATM 28 C C3C CLA . . . V 12 190.686 142.167 159.844 1 72.32 ? C3C CLA 304 A 1 HETATM 29 C C4C CLA . . . V 12 189.863 143.257 159.331 1 72.32 ? C4C CLA 304 A 1 HETATM 30 C CMC CLA . . . V 12 191.487 141.523 162.202 1 72.32 ? CMC CLA 304 A 1 HETATM 31 C CAC CLA . . . V 12 191.304 141.092 159.052 1 72.32 ? CAC CLA 304 A 1 HETATM 32 C CBC CLA . . . V 12 192.803 141.238 158.949 1 72.32 ? CBC CLA 304 A 1 HETATM 33 N ND CLA . . . V 12 188.157 145.462 158.348 1 72.32 ? ND CLA 304 A 1 HETATM 34 C C1D CLA . . . V 12 188.716 144.467 157.503 1 72.32 ? C1D CLA 304 A 1 HETATM 35 C C2D CLA . . . V 12 188.281 144.724 156.111 1 72.32 ? C2D CLA 304 A 1 HETATM 36 C C3D CLA . . . V 12 187.46 145.835 156.162 1 72.32 ? C3D CLA 304 A 1 HETATM 37 C C4D CLA . . . V 12 187.422 146.257 157.574 1 72.32 ? C4D CLA 304 A 1 HETATM 38 C CMD CLA . . . V 12 188.657 143.909 154.959 1 72.32 ? CMD CLA 304 A 1 HETATM 39 C CAD CLA . . . V 12 186.636 146.763 155.409 1 72.32 ? CAD CLA 304 A 1 HETATM 40 O OBD CLA . . . V 12 186.384 146.785 154.21 1 72.32 ? OBD CLA 304 A 1 HETATM 41 C CBD CLA . . . V 12 186.073 147.806 156.421 1 72.32 ? CBD CLA 304 A 1 HETATM 42 C CGD CLA . . . V 12 186.468 149.2 156.026 1 72.32 ? CGD CLA 304 A 1 HETATM 43 O O1D CLA . . . V 12 187.607 149.646 155.872 1 72.32 ? O1D CLA 304 A 1 HETATM 44 O O2D CLA . . . V 12 185.419 150.039 155.818 1 72.32 ? O2D CLA 304 A 1 HETATM 45 C CED CLA . . . V 12 185.691 151.283 155.173 1 72.32 ? CED CLA 304 A 1 HETATM 46 C C1 CLA . . . V 12 180.887 150.195 156.902 1 72.32 ? C1 CLA 304 A 1 HETATM 47 C C2 CLA . . . V 12 180.903 149.038 155.974 1 72.32 ? C2 CLA 304 A 1 HETATM 48 C C3 CLA . . . V 12 181.452 149.105 154.751 1 72.32 ? C3 CLA 304 A 1 HETATM 49 C C4 CLA . . . V 12 182.08 150.345 154.241 1 72.32 ? C4 CLA 304 A 1 HETATM 50 C C5 CLA . . . V 12 181.452 147.925 153.844 1 72.32 ? C5 CLA 304 A 1 HETATM 51 C C6 CLA . . . V 12 180.423 146.885 154.237 1 72.32 ? C6 CLA 304 A 1 HETATM 52 C C7 CLA . . . V 12 180.39 145.762 153.223 1 72.32 ? C7 CLA 304 A 1 HETATM 53 C C8 CLA . . . V 12 179.245 144.795 153.489 1 72.32 ? C8 CLA 304 A 1 HETATM 54 C C9 CLA . . . V 12 179.157 143.757 152.39 1 72.32 ? C9 CLA 304 A 1 HETATM 55 C C10 CLA . . . V 12 177.928 145.549 153.604 1 72.32 ? C10 CLA 304 A 1 HETATM 56 C C11 CLA . . . V 12 177.307 145.791 152.247 1 72.32 ? C11 CLA 304 A 1 HETATM 57 C C12 CLA . . . V 12 175.998 146.542 152.362 1 72.32 ? C12 CLA 304 A 1 HETATM 58 C C13 CLA . . . V 12 175.285 146.621 151.02 1 72.32 ? C13 CLA 304 A 1 HETATM 59 C C14 CLA . . . V 12 175.445 147.995 150.405 1 72.32 ? C14 CLA 304 A 1 HETATM 60 C C15 CLA . . . V 12 173.809 146.265 151.161 1 72.32 ? C15 CLA 304 A 1 HETATM 61 C C16 CLA . . . V 12 173.645 144.876 151.745 1 72.32 ? C16 CLA 304 A 1 HETATM 62 C C17 CLA . . . V 12 172.967 144.901 153.098 1 72.32 ? C17 CLA 304 A 1 HETATM 63 C C18 CLA . . . V 12 171.479 144.596 152.987 1 72.32 ? C18 CLA 304 A 1 HETATM 64 C C19 CLA . . . V 12 171.254 143.163 152.552 1 72.32 ? C19 CLA 304 A 1 HETATM 65 C C20 CLA . . . V 12 170.784 144.851 154.308 1 72.32 ? C20 CLA 304 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 65 #