data_7ZYV # _model_server_result.job_id G39Heyw7jHE8HhKnDOK8MQ _model_server_result.datetime_utc '2024-11-26 18:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"UA","auth_seq_id":401}' # _entry.id 7ZYV # _exptl.entry_id 7ZYV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 795.116 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZYV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 EA N N ? 15 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 163 D CYS 112 1_555 D SG CYS 178 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 L SG CYS 163 L CYS 112 1_555 L SG CYS 178 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A SG CYS 35 A CYS 35 1_555 U CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale2 Z C52 PL9 . B PL9 401 1_555 TA C35 PL9 . K PL9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 C SG CYS 59 C CYS 24 1_555 DA CBC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 I SG CYS 35 I CYS 35 1_555 KA CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale5 K SG CYS 59 K CYS 24 1_555 SA CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc5 C N TYR 36 C TYR 1 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc6 C NE2 HIS 60 C HIS 25 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 D SG CYS 158 D CYS 107 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 D ND1 HIS 160 D HIS 109 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc9 D SG CYS 176 D CYS 125 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 D ND1 HIS 179 D HIS 128 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc11 I NE2 HIS 86 I HIS 86 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 I NE2 HIS 100 I HIS 100 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc13 I NE2 HIS 187 I HIS 187 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 I NE2 HIS 202 I HIS 202 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc15 K N TYR 36 K TYR 1 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc16 K NE2 HIS 60 K HIS 25 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 L SG CYS 158 L CYS 107 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 L ND1 HIS 160 L HIS 109 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc19 L SG CYS 176 L CYS 125 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 L ND1 HIS 179 L HIS 128 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? # _chem_comp.formula 'C41 H78 O12 S' _chem_comp.formula_weight 795.116 _chem_comp.id SQD _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SULFOQUINOVOSYLDIACYLGLYCEROL # _atom_sites.entry_id 7ZYV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 10 HEM A 1 301 301 HEM HEM . T 10 HEM A 1 302 302 HEM HEM . U 11 HEC A 1 303 303 HEC HEC . V 12 CLA A 1 304 304 CLA CLA . W 13 UMQ A 1 305 1801 UMQ UMQ . X 13 UMQ A 1 306 1901 UMQ UMQ . Y 14 PL9 A 1 307 401 PL9 PL9 . Z 14 PL9 B 1 401 401 PL9 PL9 . AA 14 PL9 B 1 402 301 PL9 PL9 . BA 13 UMQ B 1 403 601 UMQ UMQ . CA 13 UMQ B 1 404 701 UMQ UMQ . DA 11 HEC C 1 301 301 HEC HEC . EA 15 SQD D 1 201 201 SQD SQD . FA 16 FES D 1 202 201 FES FES . GA 17 BCR F 1 101 101 BCR BCR . HA 13 UMQ H 1 201 201 UMQ UMQ . IA 10 HEM I 1 301 301 HEM HEM . JA 10 HEM I 1 302 302 HEM HEM . KA 11 HEC I 1 303 303 HEC HEC . LA 12 CLA I 1 304 304 CLA CLA . MA 13 UMQ I 1 305 901 UMQ UMQ . NA 13 UMQ I 1 306 1001 UMQ UMQ . OA 14 PL9 J 1 401 401 PL9 PL9 . PA 14 PL9 J 1 402 201 PL9 PL9 . QA 13 UMQ J 1 403 601 UMQ UMQ . RA 13 UMQ J 1 404 701 UMQ UMQ . SA 11 HEC K 1 301 301 HEC HEC . TA 14 PL9 K 1 302 301 PL9 PL9 . UA 15 SQD L 1 401 401 SQD SQD . VA 16 FES L 1 402 201 FES FES . WA 17 BCR P 1 101 305 BCR BCR . XA 13 UMQ P 1 102 101 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 SQD . . . UA 15 149.633 137.326 178.283 1 82.46 ? O6 SQD 401 L 1 HETATM 2 C C44 SQD . . . UA 15 150.533 136.269 178.021 1 82.46 ? C44 SQD 401 L 1 HETATM 3 C C45 SQD . . . UA 15 150.938 136.295 176.552 1 82.46 ? C45 SQD 401 L 1 HETATM 4 C C46 SQD . . . UA 15 152.032 137.336 176.327 1 82.46 ? C46 SQD 401 L 1 HETATM 5 O O47 SQD . . . UA 15 151.313 135.013 176.086 1 82.46 ? O47 SQD 401 L 1 HETATM 6 C C7 SQD . . . UA 15 150.483 134.349 175.148 1 82.46 ? C7 SQD 401 L 1 HETATM 7 O O49 SQD . . . UA 15 149.995 133.27 175.432 1 82.46 ? O49 SQD 401 L 1 HETATM 8 C C8 SQD . . . UA 15 149.863 135.165 174.017 1 82.46 ? C8 SQD 401 L 1 HETATM 9 C C9 SQD . . . UA 15 148.363 134.883 173.956 1 82.46 ? C9 SQD 401 L 1 HETATM 10 C C10 SQD . . . UA 15 147.758 135.639 172.783 1 82.46 ? C10 SQD 401 L 1 HETATM 11 C C11 SQD . . . UA 15 147.54 137.102 173.182 1 82.46 ? C11 SQD 401 L 1 HETATM 12 C C12 SQD . . . UA 15 146.779 137.835 172.091 1 82.46 ? C12 SQD 401 L 1 HETATM 13 C C13 SQD . . . UA 15 147.78 138.581 171.21 1 82.46 ? C13 SQD 401 L 1 HETATM 14 C C14 SQD . . . UA 15 147.106 139.778 170.547 1 82.46 ? C14 SQD 401 L 1 HETATM 15 C C15 SQD . . . UA 15 147.891 140.175 169.304 1 82.46 ? C15 SQD 401 L 1 HETATM 16 C C16 SQD . . . UA 15 147.395 141.52 168.796 1 82.46 ? C16 SQD 401 L 1 HETATM 17 C C17 SQD . . . UA 15 147.566 141.591 167.276 1 82.46 ? C17 SQD 401 L 1 HETATM 18 C C18 SQD . . . UA 15 147.156 142.981 166.776 1 82.46 ? C18 SQD 401 L 1 HETATM 19 C C19 SQD . . . UA 15 146.985 142.946 165.261 1 82.46 ? C19 SQD 401 L 1 HETATM 20 C C20 SQD . . . UA 15 145.694 142.241 164.912 1 82.46 ? C20 SQD 401 L 1 HETATM 21 C C21 SQD . . . UA 15 145.825 141.592 163.543 1 82.46 ? C21 SQD 401 L 1 HETATM 22 C C22 SQD . . . UA 15 146.47 142.56 162.584 1 82.46 ? C22 SQD 401 L 1 HETATM 23 O O48 SQD . . . UA 15 151.766 138.007 175.111 1 82.46 ? O48 SQD 401 L 1 HETATM 24 C C23 SQD . . . UA 15 152.093 139.379 174.954 1 82.46 ? C23 SQD 401 L 1 HETATM 25 O O10 SQD . . . UA 15 152.608 139.991 175.872 1 82.46 ? O10 SQD 401 L 1 HETATM 26 C C24 SQD . . . UA 15 152.055 139.985 173.556 1 82.46 ? C24 SQD 401 L 1 HETATM 27 C C25 SQD . . . UA 15 152.44 141.461 173.589 1 82.46 ? C25 SQD 401 L 1 HETATM 28 C C26 SQD . . . UA 15 152.788 141.911 172.162 1 82.46 ? C26 SQD 401 L 1 HETATM 29 C C27 SQD . . . UA 15 152.211 143.307 171.891 1 82.46 ? C27 SQD 401 L 1 HETATM 30 C C28 SQD . . . UA 15 152.682 143.792 170.512 1 82.46 ? C28 SQD 401 L 1 HETATM 31 C C29 SQD . . . UA 15 151.895 145.047 170.103 1 82.46 ? C29 SQD 401 L 1 HETATM 32 C C30 SQD . . . UA 15 152.75 146.3 170.313 1 82.46 ? C30 SQD 401 L 1 HETATM 33 C C31 SQD . . . UA 15 152.982 146.998 168.967 1 82.46 ? C31 SQD 401 L 1 HETATM 34 C C32 SQD . . . UA 15 152.947 148.518 169.166 1 82.46 ? C32 SQD 401 L 1 HETATM 35 C C33 SQD . . . UA 15 154.121 148.948 170.047 1 82.46 ? C33 SQD 401 L 1 HETATM 36 C C34 SQD . . . UA 15 154.95 150.001 169.308 1 82.46 ? C34 SQD 401 L 1 HETATM 37 C C35 SQD . . . UA 15 154.271 151.347 169.414 1 82.46 ? C35 SQD 401 L 1 HETATM 38 C C36 SQD . . . UA 15 154.595 151.975 170.745 1 82.46 ? C36 SQD 401 L 1 HETATM 39 C C37 SQD . . . UA 15 155.959 152.61 170.68 1 82.46 ? C37 SQD 401 L 1 HETATM 40 C C38 SQD . . . UA 15 156.267 153.28 171.994 1 82.46 ? C38 SQD 401 L 1 HETATM 41 C C1 SQD . . . UA 15 149.381 137.64 179.634 1 82.46 ? C1 SQD 401 L 1 HETATM 42 C C2 SQD . . . UA 15 149.313 139.114 179.904 1 82.46 ? C2 SQD 401 L 1 HETATM 43 O O2 SQD . . . UA 15 150.47 139.729 179.499 1 82.46 ? O2 SQD 401 L 1 HETATM 44 C C3 SQD . . . UA 15 149.162 139.317 181.379 1 82.46 ? C3 SQD 401 L 1 HETATM 45 O O3 SQD . . . UA 15 148.954 140.654 181.625 1 82.46 ? O3 SQD 401 L 1 HETATM 46 C C4 SQD . . . UA 15 148.035 138.526 181.972 1 82.46 ? C4 SQD 401 L 1 HETATM 47 O O4 SQD . . . UA 15 148.171 138.505 183.34 1 82.46 ? O4 SQD 401 L 1 HETATM 48 C C5 SQD . . . UA 15 147.99 137.12 181.464 1 82.46 ? C5 SQD 401 L 1 HETATM 49 C C6 SQD . . . UA 15 146.647 136.512 181.772 1 82.46 ? C6 SQD 401 L 1 HETATM 50 O O5 SQD . . . UA 15 148.231 136.99 180.089 1 82.46 ? O5 SQD 401 L 1 HETATM 51 S S SQD . . . UA 15 146.746 134.759 181.484 1 82.46 ? S SQD 401 L 1 HETATM 52 O O7 SQD . . . UA 15 147.311 134.469 180.193 1 82.46 ? O7 SQD 401 L 1 HETATM 53 O O8 SQD . . . UA 15 147.522 134.108 182.552 1 82.46 ? O8 SQD 401 L 1 HETATM 54 O O9 SQD . . . UA 15 145.441 134.165 181.355 1 82.46 ? O9 SQD 401 L 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 54 #