data_7ZYV
#
_model_server_result.job_id            LYrxHM5BPDvVrC5j_TmEkQ 
_model_server_result.datetime_utc      '2024-11-26 18:55:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":402}' 
#
_entry.id    7ZYV 
#
_exptl.entry_id    7ZYV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.201 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZYV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 Y N N 
? 14 Z N N 
? 14 AA N N 
? 14 OA N N 
? 14 PA N N 
? 14 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 163 D CYS 112 1_555 D SG CYS 178 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 L SG CYS 163 L CYS 112 1_555 L SG CYS 178 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A SG CYS 35 A CYS 35 1_555 U CAB HEC . A HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale2 Z C52 PL9 . B PL9 401 1_555 TA C35 PL9 . K PL9 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale3 C SG CYS 59 C CYS 24 1_555 DA CBC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale4 I SG CYS 35 I CYS 35 1_555 KA CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
covale ? covale5 K SG CYS 59 K CYS 24 1_555 SA CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? 
metalc ? metalc1 A NE2 HIS 86 A HIS 86 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc2 A NE2 HIS 100 A HIS 100 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 187 1_555 S FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc4 A NE2 HIS 202 A HIS 202 1_555 T FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? 
metalc ? metalc5 C N TYR 36 C TYR 1 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc6 C NE2 HIS 60 C HIS 25 1_555 DA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc7 D SG CYS 158 D CYS 107 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc8 D ND1 HIS 160 D HIS 109 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc9 D SG CYS 176 D CYS 125 1_555 FA FE1 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc10 D ND1 HIS 179 D HIS 128 1_555 FA FE2 FES . D FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc11 I NE2 HIS 86 I HIS 86 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc12 I NE2 HIS 100 I HIS 100 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc13 I NE2 HIS 187 I HIS 187 1_555 IA FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? 
metalc ? metalc14 I NE2 HIS 202 I HIS 202 1_555 JA FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc15 K N TYR 36 K TYR 1 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc16 K NE2 HIS 60 K HIS 25 1_555 SA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc17 L SG CYS 158 L CYS 107 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc18 L ND1 HIS 160 L HIS 109 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc19 L SG CYS 176 L CYS 125 1_555 VA FE1 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc20 L ND1 HIS 179 L HIS 128 1_555 VA FE2 FES . L FES 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? 
#
_chem_comp.formula           'C53 H80 O2' 
_chem_comp.formula_weight    749.201 
_chem_comp.id                PL9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PLASTOQUINONE 9' 
#
_atom_sites.entry_id                     7ZYV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 10 HEM A 1 301 301 HEM HEM . 
T 10 HEM A 1 302 302 HEM HEM . 
U 11 HEC A 1 303 303 HEC HEC . 
V 12 CLA A 1 304 304 CLA CLA . 
W 13 UMQ A 1 305 1801 UMQ UMQ . 
X 13 UMQ A 1 306 1901 UMQ UMQ . 
Y 14 PL9 A 1 307 401 PL9 PL9 . 
Z 14 PL9 B 1 401 401 PL9 PL9 . 
AA 14 PL9 B 1 402 301 PL9 PL9 . 
BA 13 UMQ B 1 403 601 UMQ UMQ . 
CA 13 UMQ B 1 404 701 UMQ UMQ . 
DA 11 HEC C 1 301 301 HEC HEC . 
EA 15 SQD D 1 201 201 SQD SQD . 
FA 16 FES D 1 202 201 FES FES . 
GA 17 BCR F 1 101 101 BCR BCR . 
HA 13 UMQ H 1 201 201 UMQ UMQ . 
IA 10 HEM I 1 301 301 HEM HEM . 
JA 10 HEM I 1 302 302 HEM HEM . 
KA 11 HEC I 1 303 303 HEC HEC . 
LA 12 CLA I 1 304 304 CLA CLA . 
MA 13 UMQ I 1 305 901 UMQ UMQ . 
NA 13 UMQ I 1 306 1001 UMQ UMQ . 
OA 14 PL9 J 1 401 401 PL9 PL9 . 
PA 14 PL9 J 1 402 201 PL9 PL9 . 
QA 13 UMQ J 1 403 601 UMQ UMQ . 
RA 13 UMQ J 1 404 701 UMQ UMQ . 
SA 11 HEC K 1 301 301 HEC HEC . 
TA 14 PL9 K 1 302 301 PL9 PL9 . 
UA 15 SQD L 1 401 401 SQD SQD . 
VA 16 FES L 1 402 201 FES FES . 
WA 17 BCR P 1 101 305 BCR BCR . 
XA 13 UMQ P 1 102 101 UMQ UMQ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PL9 . . . AA 14 190.403 149.429 134.291 1 84.87 ? C2 PL9 402 B 1 
HETATM 2 C C3 PL9 . . . AA 14 191.455 149.005 135.056 1 84.87 ? C3 PL9 402 B 1 
HETATM 3 C C4 PL9 . . . AA 14 191.225 148.142 136.192 1 84.87 ? C4 PL9 402 B 1 
HETATM 4 C C5 PL9 . . . AA 14 189.858 147.745 136.488 1 84.87 ? C5 PL9 402 B 1 
HETATM 5 C C6 PL9 . . . AA 14 188.809 148.178 135.709 1 84.87 ? C6 PL9 402 B 1 
HETATM 6 C C1 PL9 . . . AA 14 189.056 149.04 134.578 1 84.87 ? C1 PL9 402 B 1 
HETATM 7 C C7 PL9 . . . AA 14 192.815 149.445 134.702 1 84.87 ? C7 PL9 402 B 1 
HETATM 8 C C8 PL9 . . . AA 14 193.024 149.859 133.284 1 84.87 ? C8 PL9 402 B 1 
HETATM 9 C C9 PL9 . . . AA 14 193.746 150.934 132.945 1 84.87 ? C9 PL9 402 B 1 
HETATM 10 C C10 PL9 . . . AA 14 193.681 151.541 131.604 1 84.87 ? C10 PL9 402 B 1 
HETATM 11 C C11 PL9 . . . AA 14 194.961 151.249 133.751 1 84.87 ? C11 PL9 402 B 1 
HETATM 12 C C12 PL9 . . . AA 14 194.556 152.036 135.009 1 84.87 ? C12 PL9 402 B 1 
HETATM 13 C C13 PL9 . . . AA 14 193.604 153.082 134.565 1 84.87 ? C13 PL9 402 B 1 
HETATM 14 C C14 PL9 . . . AA 14 193.991 154.294 134.17 1 84.87 ? C14 PL9 402 B 1 
HETATM 15 C C15 PL9 . . . AA 14 193.084 155.187 133.411 1 84.87 ? C15 PL9 402 B 1 
HETATM 16 C C16 PL9 . . . AA 14 195.181 154.979 134.746 1 84.87 ? C16 PL9 402 B 1 
HETATM 17 C C17 PL9 . . . AA 14 196.525 154.461 134.224 1 84.87 ? C17 PL9 402 B 1 
HETATM 18 C C18 PL9 . . . AA 14 197.657 155.174 134.914 1 84.87 ? C18 PL9 402 B 1 
HETATM 19 C C19 PL9 . . . AA 14 198.158 154.89 136.126 1 84.87 ? C19 PL9 402 B 1 
HETATM 20 C C20 PL9 . . . AA 14 199.4 155.518 136.601 1 84.87 ? C20 PL9 402 B 1 
HETATM 21 C C21 PL9 . . . AA 14 197.301 154.159 137.102 1 84.87 ? C21 PL9 402 B 1 
HETATM 22 C C22 PL9 . . . AA 14 196.798 155.058 138.249 1 84.87 ? C22 PL9 402 B 1 
HETATM 23 C C23 PL9 . . . AA 14 197.574 154.707 139.475 1 84.87 ? C23 PL9 402 B 1 
HETATM 24 C C24 PL9 . . . AA 14 197.739 155.588 140.463 1 84.87 ? C24 PL9 402 B 1 
HETATM 25 C C25 PL9 . . . AA 14 197.237 156.967 140.412 1 84.87 ? C25 PL9 402 B 1 
HETATM 26 C C26 PL9 . . . AA 14 198.213 155.096 141.772 1 84.87 ? C26 PL9 402 B 1 
HETATM 27 C C27 PL9 . . . AA 14 197.503 155.851 142.897 1 84.87 ? C27 PL9 402 B 1 
HETATM 28 C C28 PL9 . . . AA 14 198.462 156.055 144.001 1 84.87 ? C28 PL9 402 B 1 
HETATM 29 C C29 PL9 . . . AA 14 198.181 155.657 145.235 1 84.87 ? C29 PL9 402 B 1 
HETATM 30 C C30 PL9 . . . AA 14 198.997 156.095 146.389 1 84.87 ? C30 PL9 402 B 1 
HETATM 31 C C31 PL9 . . . AA 14 196.874 155.099 145.605 1 84.87 ? C31 PL9 402 B 1 
HETATM 32 C C32 PL9 . . . AA 14 195.785 156.161 145.659 1 84.87 ? C32 PL9 402 B 1 
HETATM 33 C C33 PL9 . . . AA 14 195.384 156.22 147.084 1 84.87 ? C33 PL9 402 B 1 
HETATM 34 C C34 PL9 . . . AA 14 194.405 155.474 147.575 1 84.87 ? C34 PL9 402 B 1 
HETATM 35 C C35 PL9 . . . AA 14 193.826 154.34 146.85 1 84.87 ? C35 PL9 402 B 1 
HETATM 36 C C36 PL9 . . . AA 14 193.642 156.041 148.709 1 84.87 ? C36 PL9 402 B 1 
HETATM 37 C C37 PL9 . . . AA 14 192.156 155.775 148.522 1 84.87 ? C37 PL9 402 B 1 
HETATM 38 C C38 PL9 . . . AA 14 191.863 154.541 149.309 1 84.87 ? C38 PL9 402 B 1 
HETATM 39 C C39 PL9 . . . AA 14 191.717 154.557 150.622 1 84.87 ? C39 PL9 402 B 1 
HETATM 40 C C40 PL9 . . . AA 14 191.399 155.825 151.299 1 84.87 ? C40 PL9 402 B 1 
HETATM 41 C C41 PL9 . . . AA 14 192.399 153.489 151.385 1 84.87 ? C41 PL9 402 B 1 
HETATM 42 C C42 PL9 . . . AA 14 191.417 152.356 151.638 1 84.87 ? C42 PL9 402 B 1 
HETATM 43 C C43 PL9 . . . AA 14 190.185 152.919 152.236 1 84.87 ? C43 PL9 402 B 1 
HETATM 44 C C44 PL9 . . . AA 14 189.733 152.552 153.425 1 84.87 ? C44 PL9 402 B 1 
HETATM 45 C C45 PL9 . . . AA 14 188.293 152.573 153.753 1 84.87 ? C45 PL9 402 B 1 
HETATM 46 C C46 PL9 . . . AA 14 190.619 152.404 154.6 1 84.87 ? C46 PL9 402 B 1 
HETATM 47 C C47 PL9 . . . AA 14 189.912 152.729 155.912 1 84.87 ? C47 PL9 402 B 1 
HETATM 48 C C48 PL9 . . . AA 14 190.801 152.219 156.99 1 84.87 ? C48 PL9 402 B 1 
HETATM 49 C C49 PL9 . . . AA 14 190.385 151.399 157.945 1 84.87 ? C49 PL9 402 B 1 
HETATM 50 C C50 PL9 . . . AA 14 188.952 151.061 157.976 1 84.87 ? C50 PL9 402 B 1 
HETATM 51 C C51 PL9 . . . AA 14 191.19 150.994 159.102 1 84.87 ? C51 PL9 402 B 1 
HETATM 52 C C52 PL9 . . . AA 14 189.643 146.87 137.644 1 84.87 ? C52 PL9 402 B 1 
HETATM 53 C C53 PL9 . . . AA 14 187.417 147.812 135.958 1 84.87 ? C53 PL9 402 B 1 
HETATM 54 O O1 PL9 . . . AA 14 192.201 147.78 136.862 1 84.87 ? O1 PL9 402 B 1 
HETATM 55 O O2 PL9 . . . AA 14 188.166 149.477 133.822 1 84.87 ? O2 PL9 402 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           550 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           55 
#