data_7ZZ4 # _model_server_result.job_id YaWO8F9lSqGXIo6Rb4dICw _model_server_result.datetime_utc '2024-11-15 05:40:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 7ZZ4 # _exptl.entry_id 7ZZ4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZZ4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 292 A GLU 286 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B O1G ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B O1B ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc4 B O3B ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B O1A ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 B O3A ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 161 n n PG O2G ATP sing 162 n n PG O3G ATP sing 163 n n PG O3B ATP sing 164 n n O2G HOG2 ATP sing 165 n n O3G HOG3 ATP sing 166 n n PB O1B ATP doub 167 n n PB O2B ATP sing 168 n n PB O3B ATP sing 169 n n PB O3A ATP sing 170 n n O2B HOB2 ATP sing 171 n n PA O1A ATP doub 172 n n PA O2A ATP sing 173 n n PA O3A ATP sing 174 n n PA O5' ATP sing 175 n n O2A HOA2 ATP sing 176 n n O5' C5' ATP sing 177 n n C5' C4' ATP sing 178 n n C5' "H5'1" ATP sing 179 n n C5' "H5'2" ATP sing 180 n n C4' O4' ATP sing 181 n n C4' C3' ATP sing 182 n n C4' H4' ATP sing 183 n n O4' C1' ATP sing 184 n n C3' O3' ATP sing 185 n n C3' C2' ATP sing 186 n n C3' H3' ATP sing 187 n n O3' HO3' ATP sing 188 n n C2' O2' ATP sing 189 n n C2' C1' ATP sing 190 n n C2' H2' ATP sing 191 n n O2' HO2' ATP sing 192 n n C1' N9 ATP sing 193 n n C1' H1' ATP sing 194 n n N9 C8 ATP sing 195 n y N9 C4 ATP sing 196 n y C8 N7 ATP doub 197 n y C8 H8 ATP sing 198 n n N7 C5 ATP sing 199 n y C5 C6 ATP sing 200 n y C5 C4 ATP doub 201 n y C6 N6 ATP sing 202 n n C6 N1 ATP doub 203 n y N6 HN61 ATP sing 204 n n N6 HN62 ATP sing 205 n n N1 C2 ATP sing 206 n y C2 N3 ATP doub 207 n y C2 H2 ATP sing 208 n n N3 C4 ATP sing 209 n y # _atom_sites.entry_id 7ZZ4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1201 1202 ATP ATP . C 3 MG A 1 1202 1203 MG MG . D 4 ACO A 1 1203 1204 ACO ACO . E 5 HOH A 1 1301 71 HOH HOH . E 5 HOH A 2 1302 72 HOH HOH . E 5 HOH A 3 1303 32 HOH HOH . E 5 HOH A 4 1304 5 HOH HOH . E 5 HOH A 5 1305 27 HOH HOH . E 5 HOH A 6 1306 16 HOH HOH . E 5 HOH A 7 1307 13 HOH HOH . E 5 HOH A 8 1308 45 HOH HOH . E 5 HOH A 9 1309 4 HOH HOH . E 5 HOH A 10 1310 7 HOH HOH . E 5 HOH A 11 1311 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 217.76 149.378 187.802 1 108.17 ? PG ATP 1201 A 1 HETATM 2 O O1G ATP . . . B 2 218.759 150.244 187.115 1 87.02 ? O1G ATP 1201 A 1 HETATM 3 O O2G ATP . . . B 2 216.31 149.779 187.525 1 94.33 ? O2G ATP 1201 A 1 HETATM 4 O O3G ATP . . . B 2 217.943 147.885 187.514 1 90.93 ? O3G ATP 1201 A 1 HETATM 5 P PB ATP . . . B 2 217.773 150.58 190.528 1 96.85 ? PB ATP 1201 A 1 HETATM 6 O O1B ATP . . . B 2 217.162 151.822 190.025 1 90.67 ? O1B ATP 1201 A 1 HETATM 7 O O2B ATP . . . B 2 217.055 149.916 191.698 1 86.06 ? O2B ATP 1201 A 1 HETATM 8 O O3B ATP . . . B 2 217.909 149.499 189.383 1 93.22 ? O3B ATP 1201 A 1 HETATM 9 P PA ATP . . . B 2 220.359 151.954 190.946 1 94.11 ? PA ATP 1201 A 1 HETATM 10 O O1A ATP . . . B 2 221.213 151.923 189.743 1 86.34 ? O1A ATP 1201 A 1 HETATM 11 O O2A ATP . . . B 2 221.112 151.883 192.27 1 91.07 ? O2A ATP 1201 A 1 HETATM 12 O O3A ATP . . . B 2 219.293 150.777 190.956 1 87.38 ? O3A ATP 1201 A 1 HETATM 13 O O5' ATP . . . B 2 219.475 153.26 190.948 1 88.69 ? O5' ATP 1201 A 1 HETATM 14 C C5' ATP . . . B 2 219.807 154.387 190.112 1 84.84 ? C5' ATP 1201 A 1 HETATM 15 C C4' ATP . . . B 2 220.17 155.559 190.985 1 87.63 ? C4' ATP 1201 A 1 HETATM 16 O O4' ATP . . . B 2 220.261 155.14 192.357 1 82.1 ? O4' ATP 1201 A 1 HETATM 17 C C3' ATP . . . B 2 221.533 156.179 190.719 1 93.32 ? C3' ATP 1201 A 1 HETATM 18 O O3' ATP . . . B 2 221.483 157.078 189.619 1 95.92 ? O3' ATP 1201 A 1 HETATM 19 C C2' ATP . . . B 2 221.823 156.908 192.036 1 87.5 ? C2' ATP 1201 A 1 HETATM 20 O O2' ATP . . . B 2 221.36 158.251 192.014 1 84 ? O2' ATP 1201 A 1 HETATM 21 C C1' ATP . . . B 2 221.001 156.117 193.064 1 84.12 ? C1' ATP 1201 A 1 HETATM 22 N N9 ATP . . . B 2 221.8 155.451 194.087 1 84.36 ? N9 ATP 1201 A 1 HETATM 23 C C8 ATP . . . B 2 221.865 154.107 194.34 1 83.64 ? C8 ATP 1201 A 1 HETATM 24 N N7 ATP . . . B 2 222.666 153.786 195.326 1 80.52 ? N7 ATP 1201 A 1 HETATM 25 C C5 ATP . . . B 2 223.164 155.007 195.754 1 81.93 ? C5 ATP 1201 A 1 HETATM 26 C C6 ATP . . . B 2 224.068 155.361 196.773 1 83.06 ? C6 ATP 1201 A 1 HETATM 27 N N6 ATP . . . B 2 224.657 154.478 197.585 1 88.28 ? N6 ATP 1201 A 1 HETATM 28 N N1 ATP . . . B 2 224.351 156.671 196.937 1 74.65 ? N1 ATP 1201 A 1 HETATM 29 C C2 ATP . . . B 2 223.766 157.56 196.132 1 71.43 ? C2 ATP 1201 A 1 HETATM 30 N N3 ATP . . . B 2 222.9 157.345 195.142 1 74.41 ? N3 ATP 1201 A 1 HETATM 31 C C4 ATP . . . B 2 222.638 156.042 195.001 1 80.41 ? C4 ATP 1201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #