data_7ZZ4 # _model_server_result.job_id YbnzIL6yxaP8GxXxFS5IQA _model_server_result.datetime_utc '2024-11-15 05:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zz4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 7ZZ4 # _exptl.entry_id 7ZZ4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZZ4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZZ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 292 A GLU 286 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 B O1G ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc3 B O1B ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc4 B O3B ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc5 B O1A ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 B O3A ATP . A ATP 1201 1_555 C MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 7ZZ4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1201 1202 ATP ATP . C 3 MG A 1 1202 1203 MG MG . D 4 ACO A 1 1203 1204 ACO ACO . E 5 HOH A 1 1301 71 HOH HOH . E 5 HOH A 2 1302 72 HOH HOH . E 5 HOH A 3 1303 32 HOH HOH . E 5 HOH A 4 1304 5 HOH HOH . E 5 HOH A 5 1305 27 HOH HOH . E 5 HOH A 6 1306 16 HOH HOH . E 5 HOH A 7 1307 13 HOH HOH . E 5 HOH A 8 1308 45 HOH HOH . E 5 HOH A 9 1309 4 HOH HOH . E 5 HOH A 10 1310 7 HOH HOH . E 5 HOH A 11 1311 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 4 199.167 177.258 159.767 1 139.82 ? N1A ACO 1203 A 1 HETATM 2 C C2A ACO . . . D 4 198.209 176.355 160.015 1 141.52 ? C2A ACO 1203 A 1 HETATM 3 N N3A ACO . . . D 4 198.053 175.795 161.215 1 144.41 ? N3A ACO 1203 A 1 HETATM 4 C C4A ACO . . . D 4 198.855 176.125 162.202 1 142.81 ? C4A ACO 1203 A 1 HETATM 5 C C5A ACO . . . D 4 199.889 177.083 161.983 1 140 ? C5A ACO 1203 A 1 HETATM 6 C C6A ACO . . . D 4 200.003 177.626 160.731 1 139.43 ? C6A ACO 1203 A 1 HETATM 7 N N6A ACO . . . D 4 201.039 178.604 160.46 1 138.8 ? N6A ACO 1203 A 1 HETATM 8 N N7A ACO . . . D 4 200.58 177.196 163.33 1 140.19 ? N7A ACO 1203 A 1 HETATM 9 C C8A ACO . . . D 4 199.92 176.339 164.152 1 143.54 ? C8A ACO 1203 A 1 HETATM 10 N N9A ACO . . . D 4 199.013 175.819 163.433 1 144.07 ? N9A ACO 1203 A 1 HETATM 11 C C1B ACO . . . D 4 198.143 174.879 164.01 1 143.4 ? C1B ACO 1203 A 1 HETATM 12 C C2B ACO . . . D 4 198.847 174.035 164.995 1 142.36 ? C2B ACO 1203 A 1 HETATM 13 O O2B ACO . . . D 4 199.378 172.844 164.331 1 142.68 ? O2B ACO 1203 A 1 HETATM 14 C C3B ACO . . . D 4 197.852 173.644 165.962 1 142.05 ? C3B ACO 1203 A 1 HETATM 15 O O3B ACO . . . D 4 197.23 172.402 165.511 1 143.58 ? O3B ACO 1203 A 1 HETATM 16 P P3B ACO . . . D 4 197.476 171.02 166.37 1 144.77 ? P3B ACO 1203 A 1 HETATM 17 O O7A ACO . . . D 4 197.478 169.812 165.554 1 141.65 ? O7A ACO 1203 A 1 HETATM 18 O O8A ACO . . . D 4 198.748 170.977 167.085 1 142.72 ? O8A ACO 1203 A 1 HETATM 19 O O9A ACO . . . D 4 196.469 170.764 167.394 1 140.86 ? O9A ACO 1203 A 1 HETATM 20 C C4B ACO . . . D 4 196.815 174.696 165.968 1 143.08 ? C4B ACO 1203 A 1 HETATM 21 O O4B ACO . . . D 4 197.037 175.6 164.766 1 146.92 ? O4B ACO 1203 A 1 HETATM 22 C C5B ACO . . . D 4 196.891 175.49 167.214 1 142.15 ? C5B ACO 1203 A 1 HETATM 23 O O5B ACO . . . D 4 198.149 176.087 167.324 1 142.91 ? O5B ACO 1203 A 1 HETATM 24 P P1A ACO . . . D 4 198.685 176.451 168.835 1 144.74 ? P1A ACO 1203 A 1 HETATM 25 O O1A ACO . . . D 4 199.708 177.488 168.8 1 142.96 ? O1A ACO 1203 A 1 HETATM 26 O O2A ACO . . . D 4 197.65 177.104 169.628 1 142.12 ? O2A ACO 1203 A 1 HETATM 27 O O3A ACO . . . D 4 199.23 175.088 169.575 1 145.12 ? O3A ACO 1203 A 1 HETATM 28 P P2A ACO . . . D 4 200.385 175.102 170.742 1 145.51 ? P2A ACO 1203 A 1 HETATM 29 O O4A ACO . . . D 4 199.896 175.76 171.947 1 142.45 ? O4A ACO 1203 A 1 HETATM 30 O O5A ACO . . . D 4 200.66 173.757 171.235 1 141.45 ? O5A ACO 1203 A 1 HETATM 31 O O6A ACO . . . D 4 201.745 175.84 170.173 1 142.57 ? O6A ACO 1203 A 1 HETATM 32 C CBP ACO . . . D 4 203.365 175.407 168.463 1 139.57 ? CBP ACO 1203 A 1 HETATM 33 C CCP ACO . . . D 4 202.86 175.055 169.86 1 140.24 ? CCP ACO 1203 A 1 HETATM 34 C CDP ACO . . . D 4 204.255 174.274 167.963 1 139.91 ? CDP ACO 1203 A 1 HETATM 35 C CEP ACO . . . D 4 204.18 176.696 168.537 1 139.59 ? CEP ACO 1203 A 1 HETATM 36 C CAP ACO . . . D 4 202.156 175.608 167.549 1 141.13 ? CAP ACO 1203 A 1 HETATM 37 O OAP ACO . . . D 4 201.71 176.93 167.662 1 142.31 ? OAP ACO 1203 A 1 HETATM 38 C C9P ACO . . . D 4 202.452 175.307 166.079 1 140.8 ? C9P ACO 1203 A 1 HETATM 39 O O9P ACO . . . D 4 201.953 174.358 165.574 1 140.62 ? O9P ACO 1203 A 1 HETATM 40 N N8P ACO . . . D 4 203.313 176.183 165.302 1 141.15 ? N8P ACO 1203 A 1 HETATM 41 C C7P ACO . . . D 4 203.583 175.915 163.9 1 140.17 ? C7P ACO 1203 A 1 HETATM 42 C C6P ACO . . . D 4 204.579 174.773 163.745 1 139.16 ? C6P ACO 1203 A 1 HETATM 43 C C5P ACO . . . D 4 205.901 175.169 164.388 1 142.49 ? C5P ACO 1203 A 1 HETATM 44 O O5P ACO . . . D 4 206.358 176.246 164.208 1 143.96 ? O5P ACO 1203 A 1 HETATM 45 N N4P ACO . . . D 4 206.591 174.203 165.214 1 142.49 ? N4P ACO 1203 A 1 HETATM 46 C C3P ACO . . . D 4 207.856 174.529 165.839 1 142.28 ? C3P ACO 1203 A 1 HETATM 47 C C2P ACO . . . D 4 208.419 173.235 166.414 1 139.95 ? C2P ACO 1203 A 1 HETATM 48 S S1P ACO . . . D 4 209.805 172.592 165.431 1 145.79 ? S1P ACO 1203 A 1 HETATM 49 C C ACO . . . D 4 209.42 172.526 163.655 1 144.67 ? C ACO 1203 A 1 HETATM 50 O O ACO . . . D 4 210.236 172.871 162.869 1 147.53 ? O ACO 1203 A 1 HETATM 51 C CH3 ACO . . . D 4 208.066 172.023 163.159 1 142.98 ? CH3 ACO 1203 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #