data_7ZZ7
#
_model_server_result.job_id            lZws5BMhKAoz-2yaQt86LA 
_model_server_result.datetime_utc      '2024-10-20 03:31:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zz7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZZ7 
#
_exptl.entry_id    7ZZ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              683.633 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZZ7 
_cell.length_a            62.69 
_cell.length_b            74.635 
_cell.length_c            118.768 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZZ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
A,B,C,D 1 3 
A,B,C,D 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.69 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.69 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N13 O9' 
_chem_comp.formula_weight    683.633 
_chem_comp.id                KGI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N12 C24 KGI sing 193 n n 
N9 C21 KGI sing 194 n y 
N9 C20 KGI doub 195 n y 
C24 C21 KGI doub 196 n y 
C24 N11 KGI sing 197 n y 
C21 C22 KGI sing 198 n y 
C20 N8 KGI sing 199 n y 
N11 C23 KGI doub 200 n y 
O5 C18 KGI sing 201 n n 
C18 C19 KGI sing 202 n n 
C18 C17 KGI sing 203 n n 
O6 C19 KGI sing 204 n n 
C22 N8 KGI sing 205 n y 
C22 N10 KGI doub 206 n y 
N8 C17 KGI sing 207 n n 
C19 C16 KGI sing 208 n n 
C23 N10 KGI sing 209 n y 
C17 O4 KGI sing 210 n n 
O4 C16 KGI sing 211 n n 
C16 C15 KGI sing 212 n n 
C15 N7 KGI sing 213 n n 
N6 C11 KGI sing 214 n n 
C11 N5 KGI doub 215 n y 
C11 C8 KGI sing 216 n y 
N7 C25 KGI sing 217 n n 
N7 C14 KGI sing 218 n n 
N5 C10 KGI sing 219 n y 
N3 C8 KGI sing 220 n y 
N3 C7 KGI doub 221 n y 
C8 C9 KGI doub 222 n y 
O7 C26 KGI doub 223 n n 
C25 C26 KGI sing 224 n n 
C10 N4 KGI doub 225 n y 
C7 C12 KGI sing 226 n n 
C7 N2 KGI sing 227 n y 
C26 O8 KGI sing 228 n n 
C13 C12 KGI trip 229 n n 
C13 C14 KGI sing 230 n n 
C9 N4 KGI sing 231 n y 
C9 N2 KGI sing 232 n y 
C2 N1 KGI sing 233 n n 
C2 C3 KGI sing 234 n n 
O1 C3 KGI sing 235 n n 
O1 C4 KGI sing 236 n n 
N2 C4 KGI sing 237 n n 
N1 C1 KGI sing 238 n n 
C3 C6 KGI sing 239 n n 
C4 C5 KGI sing 240 n n 
C1 O KGI doub 241 n n 
C1 C KGI sing 242 n n 
C5 C6 KGI sing 243 n n 
C5 O2 KGI sing 244 n n 
C6 O3 KGI sing 245 n n 
C N KGI sing 246 n n 
N1 H1 KGI sing 247 n n 
O5 H2 KGI sing 248 n n 
C5 H3 KGI sing 249 n n 
C6 H4 KGI sing 250 n n 
C4 H5 KGI sing 251 n n 
C3 H6 KGI sing 252 n n 
O3 H7 KGI sing 253 n n 
C2 H8 KGI sing 254 n n 
C2 H9 KGI sing 255 n n 
N H10 KGI sing 256 n n 
N H11 KGI sing 257 n n 
C H13 KGI sing 258 n n 
C H14 KGI sing 259 n n 
C10 H15 KGI sing 260 n n 
C14 H16 KGI sing 261 n n 
C14 H17 KGI sing 262 n n 
C15 H18 KGI sing 263 n n 
C15 H19 KGI sing 264 n n 
C16 H20 KGI sing 265 n n 
C17 H21 KGI sing 266 n n 
C18 H22 KGI sing 267 n n 
C19 H23 KGI sing 268 n n 
C20 H24 KGI sing 269 n n 
C23 H25 KGI sing 270 n n 
C25 H26 KGI sing 271 n n 
C25 H27 KGI sing 272 n n 
N12 H28 KGI sing 273 n n 
N12 H29 KGI sing 274 n n 
N6 H30 KGI sing 275 n n 
N6 H31 KGI sing 276 n n 
O2 H33 KGI sing 277 n n 
O6 H34 KGI sing 278 n n 
O8 H35 KGI sing 279 n n 
#
_atom_sites.entry_id                     7ZZ7 
_atom_sites.fract_transf_matrix[1][1]    0.015952 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013399 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 1 CIT CIT . 
C 3 KGI A 1 302 1 KGI XXX . 
D 4 HOH A 1 401 90 HOH HOH . 
D 4 HOH A 2 402 91 HOH HOH . 
D 4 HOH A 3 403 3 HOH HOH . 
D 4 HOH A 4 404 32 HOH HOH . 
D 4 HOH A 5 405 74 HOH HOH . 
D 4 HOH A 6 406 77 HOH HOH . 
D 4 HOH A 7 407 6 HOH HOH . 
D 4 HOH A 8 408 42 HOH HOH . 
D 4 HOH A 9 409 17 HOH HOH . 
D 4 HOH A 10 410 73 HOH HOH . 
D 4 HOH A 11 411 21 HOH HOH . 
D 4 HOH A 12 412 52 HOH HOH . 
D 4 HOH A 13 413 54 HOH HOH . 
D 4 HOH A 14 414 19 HOH HOH . 
D 4 HOH A 15 415 97 HOH HOH . 
D 4 HOH A 16 416 4 HOH HOH . 
D 4 HOH A 17 417 41 HOH HOH . 
D 4 HOH A 18 418 35 HOH HOH . 
D 4 HOH A 19 419 96 HOH HOH . 
D 4 HOH A 20 420 11 HOH HOH . 
D 4 HOH A 21 421 27 HOH HOH . 
D 4 HOH A 22 422 45 HOH HOH . 
D 4 HOH A 23 423 30 HOH HOH . 
D 4 HOH A 24 424 29 HOH HOH . 
D 4 HOH A 25 425 61 HOH HOH . 
D 4 HOH A 26 426 26 HOH HOH . 
D 4 HOH A 27 427 38 HOH HOH . 
D 4 HOH A 28 428 36 HOH HOH . 
D 4 HOH A 29 429 1 HOH HOH . 
D 4 HOH A 30 430 10 HOH HOH . 
D 4 HOH A 31 431 47 HOH HOH . 
D 4 HOH A 32 432 39 HOH HOH . 
D 4 HOH A 33 433 20 HOH HOH . 
D 4 HOH A 34 434 2 HOH HOH . 
D 4 HOH A 35 435 34 HOH HOH . 
D 4 HOH A 36 436 13 HOH HOH . 
D 4 HOH A 37 437 8 HOH HOH . 
D 4 HOH A 38 438 23 HOH HOH . 
D 4 HOH A 39 439 24 HOH HOH . 
D 4 HOH A 40 440 51 HOH HOH . 
D 4 HOH A 41 441 9 HOH HOH . 
D 4 HOH A 42 442 18 HOH HOH . 
D 4 HOH A 43 443 22 HOH HOH . 
D 4 HOH A 44 444 48 HOH HOH . 
D 4 HOH A 45 445 37 HOH HOH . 
D 4 HOH A 46 446 93 HOH HOH . 
D 4 HOH A 47 447 40 HOH HOH . 
D 4 HOH A 48 448 16 HOH HOH . 
D 4 HOH A 49 449 50 HOH HOH . 
D 4 HOH A 50 450 7 HOH HOH . 
D 4 HOH A 51 451 95 HOH HOH . 
D 4 HOH A 52 452 15 HOH HOH . 
D 4 HOH A 53 453 43 HOH HOH . 
D 4 HOH A 54 454 25 HOH HOH . 
D 4 HOH A 55 455 72 HOH HOH . 
D 4 HOH A 56 456 53 HOH HOH . 
D 4 HOH A 57 457 5 HOH HOH . 
D 4 HOH A 58 458 59 HOH HOH . 
D 4 HOH A 59 459 28 HOH HOH . 
D 4 HOH A 60 460 85 HOH HOH . 
D 4 HOH A 61 461 58 HOH HOH . 
D 4 HOH A 62 462 92 HOH HOH . 
D 4 HOH A 63 463 46 HOH HOH . 
D 4 HOH A 64 464 76 HOH HOH . 
D 4 HOH A 65 465 56 HOH HOH . 
D 4 HOH A 66 466 31 HOH HOH . 
D 4 HOH A 67 467 63 HOH HOH . 
D 4 HOH A 68 468 49 HOH HOH . 
D 4 HOH A 69 469 60 HOH HOH . 
D 4 HOH A 70 470 75 HOH HOH . 
D 4 HOH A 71 471 65 HOH HOH . 
D 4 HOH A 72 472 87 HOH HOH . 
D 4 HOH A 73 473 80 HOH HOH . 
D 4 HOH A 74 474 33 HOH HOH . 
D 4 HOH A 75 475 14 HOH HOH . 
D 4 HOH A 76 476 98 HOH HOH . 
D 4 HOH A 77 477 57 HOH HOH . 
D 4 HOH A 78 478 89 HOH HOH . 
D 4 HOH A 79 479 86 HOH HOH . 
D 4 HOH A 80 480 68 HOH HOH . 
D 4 HOH A 81 481 94 HOH HOH . 
D 4 HOH A 82 482 84 HOH HOH . 
D 4 HOH A 83 483 82 HOH HOH . 
D 4 HOH A 84 484 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KGI . . . C 3 15.717 7.142 14.111 1 57.33 ? N1 KGI 302 A 1 
HETATM 2 C C7 KGI . . . C 3 18.583 11.302 12.892 1 34.02 ? C7 KGI 302 A 1 
HETATM 3 C C8 KGI . . . C 3 20.394 12.307 12.374 1 32.09 ? C8 KGI 302 A 1 
HETATM 4 N N2 KGI . . . C 3 19.613 10.548 13.438 1 35.21 ? N2 KGI 302 A 1 
HETATM 5 C C9 KGI . . . C 3 20.784 11.191 13.102 1 32.2 ? C9 KGI 302 A 1 
HETATM 6 O O1 KGI . . . C 3 19.131 8.245 13.416 1 37.35 ? O1 KGI 302 A 1 
HETATM 7 C C1 KGI . . . C 3 15.56 6.445 15.239 1 64.43 ? C1 KGI 302 A 1 
HETATM 8 O O5 KGI . . . C 3 17.712 10.371 7.976 1 30.89 ? O5 KGI 302 A 1 
HETATM 9 C C5 KGI . . . C 3 18.554 9.369 15.409 1 39.81 ? C5 KGI 302 A 1 
HETATM 10 C C6 KGI . . . C 3 18.329 7.875 15.614 1 43.44 ? C6 KGI 302 A 1 
HETATM 11 N N3 KGI . . . C 3 19.012 12.374 12.252 1 32.64 ? N3 KGI 302 A 1 
HETATM 12 C C4 KGI . . . C 3 19.524 9.331 14.236 1 37.53 ? C4 KGI 302 A 1 
HETATM 13 O O4 KGI . . . C 3 15.736 8.459 9.977 1 34.04 ? O4 KGI 302 A 1 
HETATM 14 C C3 KGI . . . C 3 18.296 7.342 14.174 1 42.05 ? C3 KGI 302 A 1 
HETATM 15 O O3 KGI . . . C 3 19.445 7.313 16.296 1 42.77 ? O3 KGI 302 A 1 
HETATM 16 C C2 KGI . . . C 3 16.991 7.299 13.393 1 43.22 ? C2 KGI 302 A 1 
HETATM 17 N N4 KGI . . . C 3 22.032 10.82 13.387 1 30.64 ? N4 KGI 302 A 1 
HETATM 18 N N KGI . . . C 3 13.349 5.851 16.142 1 66.62 ? N KGI 302 A 1 
HETATM 19 C C KGI . . . C 3 14.345 6.914 16.063 1 60.55 ? C KGI 302 A 1 
HETATM 20 O O KGI . . . C 3 16.332 5.565 15.624 1 68.47 ? O KGI 302 A 1 
HETATM 21 C C10 KGI . . . C 3 22.92 11.67 12.864 1 31.92 ? C10 KGI 302 A 1 
HETATM 22 C C11 KGI . . . C 3 21.424 13.131 11.878 1 31.87 ? C11 KGI 302 A 1 
HETATM 23 C C12 KGI . . . C 3 17.211 10.931 13.003 1 33.61 ? C12 KGI 302 A 1 
HETATM 24 C C13 KGI . . . C 3 16.026 10.795 13.001 1 36.34 ? C13 KGI 302 A 1 
HETATM 25 C C14 KGI . . . C 3 14.572 10.564 13.057 1 34.88 ? C14 KGI 302 A 1 
HETATM 26 C C15 KGI . . . C 3 13.962 9.936 10.718 1 34.85 ? C15 KGI 302 A 1 
HETATM 27 C C16 KGI . . . C 3 15.29 9.828 9.989 1 34.47 ? C16 KGI 302 A 1 
HETATM 28 C C17 KGI . . . C 3 16.804 8.387 9.047 1 32.06 ? C17 KGI 302 A 1 
HETATM 29 C C18 KGI . . . C 3 16.585 9.505 8.011 1 30.42 ? C18 KGI 302 A 1 
HETATM 30 C C19 KGI . . . C 3 15.317 10.214 8.515 1 30.18 ? C19 KGI 302 A 1 
HETATM 31 C C20 KGI . . . C 3 15.853 6.42 7.762 1 33.16 ? C20 KGI 302 A 1 
HETATM 32 C C21 KGI . . . C 3 17.521 5.107 7.678 1 31.23 ? C21 KGI 302 A 1 
HETATM 33 C C22 KGI . . . C 3 17.928 6.202 8.428 1 31.76 ? C22 KGI 302 A 1 
HETATM 34 C C23 KGI . . . C 3 19.962 5.39 8.671 1 32.31 ? C23 KGI 302 A 1 
HETATM 35 C C24 KGI . . . C 3 18.481 4.102 7.448 1 29.52 ? C24 KGI 302 A 1 
HETATM 36 C C25 KGI . . . C 3 12.851 8.907 12.644 1 42.16 ? C25 KGI 302 A 1 
HETATM 37 C C26 KGI . . . C 3 11.617 9.737 12.921 1 42.9 ? C26 KGI 302 A 1 
HETATM 38 N N10 KGI . . . C 3 19.137 6.399 8.962 1 30.29 ? N10 KGI 302 A 1 
HETATM 39 N N11 KGI . . . C 3 19.716 4.283 7.964 1 29.32 ? N11 KGI 302 A 1 
HETATM 40 N N12 KGI . . . C 3 18.241 2.986 6.753 1 31.31 ? N12 KGI 302 A 1 
HETATM 41 N N5 KGI . . . C 3 22.699 12.774 12.143 1 31.54 ? N5 KGI 302 A 1 
HETATM 42 N N6 KGI . . . C 3 21.208 14.241 11.163 1 30.19 ? N6 KGI 302 A 1 
HETATM 43 N N7 KGI . . . C 3 14.065 9.549 12.134 1 40.79 ? N7 KGI 302 A 1 
HETATM 44 N N8 KGI . . . C 3 16.847 7.047 8.465 1 31.15 ? N8 KGI 302 A 1 
HETATM 45 N N9 KGI . . . C 3 16.205 5.256 7.267 1 33.19 ? N9 KGI 302 A 1 
HETATM 46 O O2 KGI . . . C 3 19.177 10.003 16.521 1 36.72 ? O2 KGI 302 A 1 
HETATM 47 O O6 KGI . . . C 3 15.401 11.623 8.326 1 28.31 ? O6 KGI 302 A 1 
HETATM 48 O O7 KGI . . . C 3 11.661 10.988 12.534 1 40.63 ? O7 KGI 302 A 1 
HETATM 49 O O8 KGI . . . C 3 10.648 9.251 13.47 1 47.77 ? O8 KGI 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           49 
#