data_7ZZ9 # _model_server_result.job_id fVnL8u5J4kt3reRh73903w _model_server_result.datetime_utc '2025-01-10 15:01:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zz9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZZ9 # _exptl.entry_id 7ZZ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 697.659 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZZ9 _cell.length_a 62.991 _cell.length_b 74.509 _cell.length_c 118.583 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZZ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.991 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.991 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H35 N13 O9' _chem_comp.formula_weight 697.659 _chem_comp.id KG6 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[[(2~{R},3~{S},4~{R},5~{R})-5-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azanylethyl)amino]prop-1-ynyl]-6-azanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-3-oxidanylidene-propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 C25 KG6 sing 193 n n N9 C24 KG6 sing 194 n y N9 C23 KG6 doub 195 n y C25 C24 KG6 doub 196 n y C25 N11 KG6 sing 197 n y C24 C27 KG6 sing 198 n y C23 N8 KG6 sing 199 n y N11 C26 KG6 doub 200 n y C21 O7 KG6 sing 201 n n C21 C22 KG6 sing 202 n n C21 C20 KG6 sing 203 n n O8 C22 KG6 sing 204 n n C27 N8 KG6 sing 205 n y C27 N12 KG6 doub 206 n y N8 C20 KG6 sing 207 n n C22 C19 KG6 sing 208 n n C26 N12 KG6 sing 209 n y C20 O6 KG6 sing 210 n n O2 C15 KG6 doub 211 n n C19 O6 KG6 sing 212 n n C19 C18 KG6 sing 213 n n C18 N1 KG6 sing 214 n n C15 C14 KG6 sing 215 n n C15 O3 KG6 sing 216 n n N3 C7 KG6 sing 217 n n C14 C13 KG6 sing 218 n n C7 N4 KG6 doub 219 n y C7 C6 KG6 sing 220 n y N1 C1 KG6 sing 221 n n N1 C2 KG6 sing 222 n n N4 C8 KG6 sing 223 n y N2 C6 KG6 sing 224 n y N2 C5 KG6 doub 225 n y C6 C9 KG6 doub 226 n y C1 C KG6 sing 227 n n C13 N7 KG6 sing 228 n n C13 O1 KG6 doub 229 n n N7 C12 KG6 sing 230 n n C5 C4 KG6 sing 231 n n C5 N6 KG6 sing 232 n y C8 N5 KG6 doub 233 n y C4 C3 KG6 trip 234 n n C3 C2 KG6 sing 235 n n C9 N5 KG6 sing 236 n y C9 N6 KG6 sing 237 n y O C10 KG6 sing 238 n n O C11 KG6 sing 239 n n N6 C10 KG6 sing 240 n n C N KG6 sing 241 n n C12 C11 KG6 sing 242 n n C10 C17 KG6 sing 243 n n C11 C16 KG6 sing 244 n n C17 C16 KG6 sing 245 n n C17 O5 KG6 sing 246 n n C16 O4 KG6 sing 247 n n C8 H2 KG6 sing 248 n n C1 H3 KG6 sing 249 n n C1 H4 KG6 sing 250 n n O5 H5 KG6 sing 251 n n N3 H6 KG6 sing 252 n n N3 H7 KG6 sing 253 n n O4 H8 KG6 sing 254 n n O3 H9 KG6 sing 255 n n C2 H10 KG6 sing 256 n n C2 H11 KG6 sing 257 n n N H12 KG6 sing 258 n n N H13 KG6 sing 259 n n C H15 KG6 sing 260 n n C H16 KG6 sing 261 n n C10 H17 KG6 sing 262 n n C11 H18 KG6 sing 263 n n C12 H19 KG6 sing 264 n n C12 H20 KG6 sing 265 n n C14 H21 KG6 sing 266 n n C14 H22 KG6 sing 267 n n C16 H23 KG6 sing 268 n n C17 H24 KG6 sing 269 n n C18 H25 KG6 sing 270 n n C18 H26 KG6 sing 271 n n C19 H27 KG6 sing 272 n n C20 H28 KG6 sing 273 n n C21 H29 KG6 sing 274 n n C22 H30 KG6 sing 275 n n C23 H31 KG6 sing 276 n n C26 H32 KG6 sing 277 n n N10 H33 KG6 sing 278 n n N10 H34 KG6 sing 279 n n N7 H35 KG6 sing 280 n n O7 H36 KG6 sing 281 n n O8 H37 KG6 sing 282 n n # _atom_sites.entry_id 7ZZ9 _atom_sites.fract_transf_matrix[1][1] 0.015875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 KG6 A 1 302 1 KG6 XXX . D 4 HOH A 1 401 50 HOH HOH . D 4 HOH A 2 402 63 HOH HOH . D 4 HOH A 3 403 2 HOH HOH . D 4 HOH A 4 404 98 HOH HOH . D 4 HOH A 5 405 20 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 58 HOH HOH . D 4 HOH A 8 408 5 HOH HOH . D 4 HOH A 9 409 41 HOH HOH . D 4 HOH A 10 410 21 HOH HOH . D 4 HOH A 11 411 24 HOH HOH . D 4 HOH A 12 412 26 HOH HOH . D 4 HOH A 13 413 29 HOH HOH . D 4 HOH A 14 414 28 HOH HOH . D 4 HOH A 15 415 3 HOH HOH . D 4 HOH A 16 416 43 HOH HOH . D 4 HOH A 17 417 1 HOH HOH . D 4 HOH A 18 418 34 HOH HOH . D 4 HOH A 19 419 13 HOH HOH . D 4 HOH A 20 420 100 HOH HOH . D 4 HOH A 21 421 17 HOH HOH . D 4 HOH A 22 422 16 HOH HOH . D 4 HOH A 23 423 8 HOH HOH . D 4 HOH A 24 424 44 HOH HOH . D 4 HOH A 25 425 30 HOH HOH . D 4 HOH A 26 426 95 HOH HOH . D 4 HOH A 27 427 65 HOH HOH . D 4 HOH A 28 428 55 HOH HOH . D 4 HOH A 29 429 92 HOH HOH . D 4 HOH A 30 430 51 HOH HOH . D 4 HOH A 31 431 75 HOH HOH . D 4 HOH A 32 432 37 HOH HOH . D 4 HOH A 33 433 11 HOH HOH . D 4 HOH A 34 434 64 HOH HOH . D 4 HOH A 35 435 39 HOH HOH . D 4 HOH A 36 436 6 HOH HOH . D 4 HOH A 37 437 19 HOH HOH . D 4 HOH A 38 438 23 HOH HOH . D 4 HOH A 39 439 52 HOH HOH . D 4 HOH A 40 440 4 HOH HOH . D 4 HOH A 41 441 18 HOH HOH . D 4 HOH A 42 442 7 HOH HOH . D 4 HOH A 43 443 96 HOH HOH . D 4 HOH A 44 444 97 HOH HOH . D 4 HOH A 45 445 93 HOH HOH . D 4 HOH A 46 446 47 HOH HOH . D 4 HOH A 47 447 10 HOH HOH . D 4 HOH A 48 448 86 HOH HOH . D 4 HOH A 49 449 27 HOH HOH . D 4 HOH A 50 450 57 HOH HOH . D 4 HOH A 51 451 81 HOH HOH . D 4 HOH A 52 452 15 HOH HOH . D 4 HOH A 53 453 84 HOH HOH . D 4 HOH A 54 454 101 HOH HOH . D 4 HOH A 55 455 69 HOH HOH . D 4 HOH A 56 456 25 HOH HOH . D 4 HOH A 57 457 14 HOH HOH . D 4 HOH A 58 458 60 HOH HOH . D 4 HOH A 59 459 22 HOH HOH . D 4 HOH A 60 460 61 HOH HOH . D 4 HOH A 61 461 56 HOH HOH . D 4 HOH A 62 462 45 HOH HOH . D 4 HOH A 63 463 31 HOH HOH . D 4 HOH A 64 464 102 HOH HOH . D 4 HOH A 65 465 83 HOH HOH . D 4 HOH A 66 466 73 HOH HOH . D 4 HOH A 67 467 35 HOH HOH . D 4 HOH A 68 468 40 HOH HOH . D 4 HOH A 69 469 88 HOH HOH . D 4 HOH A 70 470 78 HOH HOH . D 4 HOH A 71 471 38 HOH HOH . D 4 HOH A 72 472 90 HOH HOH . D 4 HOH A 73 473 42 HOH HOH . D 4 HOH A 74 474 91 HOH HOH . D 4 HOH A 75 475 99 HOH HOH . D 4 HOH A 76 476 79 HOH HOH . D 4 HOH A 77 477 104 HOH HOH . D 4 HOH A 78 478 72 HOH HOH . D 4 HOH A 79 479 94 HOH HOH . D 4 HOH A 80 480 103 HOH HOH . D 4 HOH A 81 481 76 HOH HOH . D 4 HOH A 82 482 70 HOH HOH . D 4 HOH A 83 483 48 HOH HOH . D 4 HOH A 84 484 59 HOH HOH . D 4 HOH A 85 485 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KG6 . . . C 3 14.106 9.386 12.027 1 32.03 ? N1 KG6 302 A 1 HETATM 2 C C7 KG6 . . . C 3 21.462 12.92 11.879 1 30.64 ? C7 KG6 302 A 1 HETATM 3 C C8 KG6 . . . C 3 22.859 11.359 12.877 1 32.86 ? C8 KG6 302 A 1 HETATM 4 N N2 KG6 . . . C 3 19.004 12.316 12.229 1 30.56 ? N2 KG6 302 A 1 HETATM 5 C C9 KG6 . . . C 3 20.688 11.029 13.103 1 34.22 ? C9 KG6 302 A 1 HETATM 6 O O1 KG6 . . . C 3 16.181 4.572 13.469 1 39.72 ? O1 KG6 302 A 1 HETATM 7 C C1 KG6 . . . C 3 12.844 8.755 12.449 1 39.16 ? C1 KG6 302 A 1 HETATM 8 O O5 KG6 . . . C 3 19.247 9.852 16.481 1 35.43 ? O5 KG6 302 A 1 HETATM 9 C C5 KG6 . . . C 3 18.499 11.268 12.85 1 32.62 ? C5 KG6 302 A 1 HETATM 10 C C6 KG6 . . . C 3 20.382 12.166 12.369 1 30.74 ? C6 KG6 302 A 1 HETATM 11 N N3 KG6 . . . C 3 21.321 14.05 11.155 1 31.94 ? N3 KG6 302 A 1 HETATM 12 C C4 KG6 . . . C 3 17.111 10.961 12.888 1 32.25 ? C4 KG6 302 A 1 HETATM 13 O O4 KG6 . . . C 3 19.403 7.171 16.161 1 39.33 ? O4 KG6 302 A 1 HETATM 14 C C3 KG6 . . . C 3 15.93 10.798 12.895 1 35.48 ? C3 KG6 302 A 1 HETATM 15 O O3 KG6 . . . C 3 13.331 5.562 11.67 1 45.44 ? O3 KG6 302 A 1 HETATM 16 C C2 KG6 . . . C 3 14.495 10.465 12.93 1 33.79 ? C2 KG6 302 A 1 HETATM 17 N N4 KG6 . . . C 3 22.709 12.478 12.153 1 31.51 ? N4 KG6 302 A 1 HETATM 18 N N KG6 . . . C 3 11.716 7.729 14.436 1 62.63 ? N KG6 302 A 1 HETATM 19 C C KG6 . . . C 3 12.987 7.929 13.716 1 52.62 ? C KG6 302 A 1 HETATM 20 O O KG6 . . . C 3 18.794 8.169 13.375 1 34.63 ? O KG6 302 A 1 HETATM 21 C C10 KG6 . . . C 3 19.329 9.21 14.178 1 33.96 ? C10 KG6 302 A 1 HETATM 22 C C11 KG6 . . . C 3 17.994 7.294 14.206 1 42.11 ? C11 KG6 302 A 1 HETATM 23 C C12 KG6 . . . C 3 16.544 7.35 13.769 1 39.41 ? C12 KG6 302 A 1 HETATM 24 C C13 KG6 . . . C 3 16.002 5.312 12.504 1 40.33 ? C13 KG6 302 A 1 HETATM 25 C C14 KG6 . . . C 3 15.538 4.762 11.172 1 46.44 ? C14 KG6 302 A 1 HETATM 26 C C15 KG6 . . . C 3 14.066 4.959 10.901 1 50.89 ? C15 KG6 302 A 1 HETATM 27 C C16 KG6 . . . C 3 18.228 7.772 15.644 1 36.19 ? C16 KG6 302 A 1 HETATM 28 C C17 KG6 . . . C 3 18.472 9.267 15.44 1 37.4 ? C17 KG6 302 A 1 HETATM 29 C C18 KG6 . . . C 3 14.053 9.783 10.608 1 29.14 ? C18 KG6 302 A 1 HETATM 30 C C19 KG6 . . . C 3 15.415 9.68 9.942 1 32.22 ? C19 KG6 302 A 1 HETATM 31 C C20 KG6 . . . C 3 16.933 8.232 9.016 1 33.48 ? C20 KG6 302 A 1 HETATM 32 C C21 KG6 . . . C 3 16.714 9.329 7.965 1 29.86 ? C21 KG6 302 A 1 HETATM 33 C C22 KG6 . . . C 3 15.443 10.038 8.458 1 30.63 ? C22 KG6 302 A 1 HETATM 34 C C23 KG6 . . . C 3 16.007 6.215 7.758 1 32.8 ? C23 KG6 302 A 1 HETATM 35 C C24 KG6 . . . C 3 17.739 4.982 7.668 1 32.59 ? C24 KG6 302 A 1 HETATM 36 C C25 KG6 . . . C 3 18.753 4.028 7.432 1 32.19 ? C25 KG6 302 A 1 HETATM 37 C C26 KG6 . . . C 3 20.182 5.415 8.611 1 32.38 ? C26 KG6 302 A 1 HETATM 38 C C27 KG6 . . . C 3 18.1 6.103 8.402 1 29.62 ? C27 KG6 302 A 1 HETATM 39 N N10 KG6 . . . C 3 18.556 2.853 6.808 1 30.72 ? N10 KG6 302 A 1 HETATM 40 N N11 KG6 . . . C 3 19.984 4.296 7.908 1 27.76 ? N11 KG6 302 A 1 HETATM 41 N N12 KG6 . . . C 3 19.31 6.377 8.915 1 30.88 ? N12 KG6 302 A 1 HETATM 42 N N5 KG6 . . . C 3 21.911 10.569 13.401 1 32.7 ? N5 KG6 302 A 1 HETATM 43 N N6 KG6 . . . C 3 19.475 10.449 13.418 1 32.67 ? N6 KG6 302 A 1 HETATM 44 N N7 KG6 . . . C 3 16.234 6.624 12.544 1 39.92 ? N7 KG6 302 A 1 HETATM 45 N N8 KG6 . . . C 3 16.982 6.897 8.446 1 33.56 ? N8 KG6 302 A 1 HETATM 46 N N9 KG6 . . . C 3 16.412 5.066 7.263 1 35.28 ? N9 KG6 302 A 1 HETATM 47 O O2 KG6 . . . C 3 13.653 4.413 9.76 1 48.28 ? O2 KG6 302 A 1 HETATM 48 O O6 KG6 . . . C 3 15.876 8.314 9.964 1 33.95 ? O6 KG6 302 A 1 HETATM 49 O O7 KG6 . . . C 3 17.85 10.189 7.979 1 28.36 ? O7 KG6 302 A 1 HETATM 50 O O8 KG6 . . . C 3 15.545 11.442 8.269 1 28.93 ? O8 KG6 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #