data_7ZZA
#
_model_server_result.job_id            vVmZUOFMNMbrm79Mp57HTw 
_model_server_result.datetime_utc      '2024-10-19 12:23:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zza 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZZA 
#
_exptl.entry_id    7ZZA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              726.7 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZZA 
_cell.length_a            62.84 
_cell.length_b            74.171 
_cell.length_c            118.537 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZZA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.84 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.84 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C29 H38 N14 O9' 
_chem_comp.formula_weight    726.7 
_chem_comp.id                KH9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N11 C24 KH9 sing 193 n n 
N10 C23 KH9 sing 194 n y 
N10 C22 KH9 doub 195 n y 
C24 C23 KH9 doub 196 n y 
C24 N12 KH9 sing 197 n y 
C23 C26 KH9 sing 198 n y 
C22 N9 KH9 sing 199 n y 
N12 C25 KH9 doub 200 n y 
O5 C20 KH9 sing 201 n n 
C20 C21 KH9 sing 202 n n 
C20 C19 KH9 sing 203 n n 
O6 C21 KH9 sing 204 n n 
N C KH9 sing 205 n n 
C26 N9 KH9 sing 206 n y 
C26 N13 KH9 doub 207 n y 
N9 C19 KH9 sing 208 n n 
C21 C18 KH9 sing 209 n n 
C25 N13 KH9 sing 210 n y 
C C1 KH9 sing 211 n n 
C19 O4 KH9 sing 212 n n 
C18 O4 KH9 sing 213 n n 
C18 C17 KH9 sing 214 n n 
C1 C2 KH9 sing 215 n n 
C2 N1 KH9 sing 216 n n 
C17 N8 KH9 sing 217 n n 
N1 C3 KH9 sing 218 n n 
N5 C11 KH9 sing 219 n n 
C11 N6 KH9 doub 220 n y 
C11 C10 KH9 sing 221 n y 
N8 C27 KH9 sing 222 n n 
N8 C16 KH9 sing 223 n n 
N6 C12 KH9 sing 224 n y 
N4 C10 KH9 sing 225 n y 
N4 C9 KH9 doub 226 n y 
C3 N2 KH9 sing 227 n n 
C3 O KH9 doub 228 n n 
C10 C13 KH9 doub 229 n y 
N2 C4 KH9 sing 230 n n 
C27 C28 KH9 sing 231 n n 
O7 C28 KH9 doub 232 n n 
C14 C9 KH9 sing 233 n n 
C14 C15 KH9 trip 234 n n 
C28 O8 KH9 sing 235 n n 
C9 N3 KH9 sing 236 n y 
C12 N7 KH9 doub 237 n y 
C15 C16 KH9 sing 238 n n 
C13 N7 KH9 sing 239 n y 
C13 N3 KH9 sing 240 n y 
N3 C6 KH9 sing 241 n n 
O1 C6 KH9 sing 242 n n 
O1 C5 KH9 sing 243 n n 
C4 C5 KH9 sing 244 n n 
C6 C7 KH9 sing 245 n n 
C5 C8 KH9 sing 246 n n 
C7 C8 KH9 sing 247 n n 
C7 O2 KH9 sing 248 n n 
C8 O3 KH9 sing 249 n n 
N1 H1 KH9 sing 250 n n 
C7 H2 KH9 sing 251 n n 
C8 H3 KH9 sing 252 n n 
N2 H4 KH9 sing 253 n n 
C1 H5 KH9 sing 254 n n 
C1 H6 KH9 sing 255 n n 
O5 H7 KH9 sing 256 n n 
C5 H8 KH9 sing 257 n n 
C6 H9 KH9 sing 258 n n 
C4 H10 KH9 sing 259 n n 
C4 H11 KH9 sing 260 n n 
O3 H12 KH9 sing 261 n n 
C2 H13 KH9 sing 262 n n 
C2 H14 KH9 sing 263 n n 
N H15 KH9 sing 264 n n 
N H16 KH9 sing 265 n n 
C H18 KH9 sing 266 n n 
C H19 KH9 sing 267 n n 
C12 H20 KH9 sing 268 n n 
C16 H21 KH9 sing 269 n n 
C16 H22 KH9 sing 270 n n 
C17 H23 KH9 sing 271 n n 
C17 H24 KH9 sing 272 n n 
C18 H25 KH9 sing 273 n n 
C19 H26 KH9 sing 274 n n 
C20 H27 KH9 sing 275 n n 
C21 H28 KH9 sing 276 n n 
C22 H29 KH9 sing 277 n n 
C25 H30 KH9 sing 278 n n 
C27 H31 KH9 sing 279 n n 
C27 H32 KH9 sing 280 n n 
N11 H33 KH9 sing 281 n n 
N11 H34 KH9 sing 282 n n 
N5 H35 KH9 sing 283 n n 
N5 H36 KH9 sing 284 n n 
O2 H38 KH9 sing 285 n n 
O6 H39 KH9 sing 286 n n 
O8 H40 KH9 sing 287 n n 
#
_atom_sites.entry_id                     7ZZA 
_atom_sites.fract_transf_matrix[1][1]    0.015913 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013482 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008436 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 265 CIT CIT . 
C 3 KH9 A 1 302 1 KH9 XXX . 
D 4 HOH A 1 401 3 HOH HOH . 
D 4 HOH A 2 402 5 HOH HOH . 
D 4 HOH A 3 403 41 HOH HOH . 
D 4 HOH A 4 404 33 HOH HOH . 
D 4 HOH A 5 405 58 HOH HOH . 
D 4 HOH A 6 406 2 HOH HOH . 
D 4 HOH A 7 407 28 HOH HOH . 
D 4 HOH A 8 408 15 HOH HOH . 
D 4 HOH A 9 409 57 HOH HOH . 
D 4 HOH A 10 410 32 HOH HOH . 
D 4 HOH A 11 411 4 HOH HOH . 
D 4 HOH A 12 412 22 HOH HOH . 
D 4 HOH A 13 413 18 HOH HOH . 
D 4 HOH A 14 414 9 HOH HOH . 
D 4 HOH A 15 415 31 HOH HOH . 
D 4 HOH A 16 416 52 HOH HOH . 
D 4 HOH A 17 417 20 HOH HOH . 
D 4 HOH A 18 418 1 HOH HOH . 
D 4 HOH A 19 419 11 HOH HOH . 
D 4 HOH A 20 420 25 HOH HOH . 
D 4 HOH A 21 421 13 HOH HOH . 
D 4 HOH A 22 422 21 HOH HOH . 
D 4 HOH A 23 423 60 HOH HOH . 
D 4 HOH A 24 424 12 HOH HOH . 
D 4 HOH A 25 425 55 HOH HOH . 
D 4 HOH A 26 426 7 HOH HOH . 
D 4 HOH A 27 427 19 HOH HOH . 
D 4 HOH A 28 428 54 HOH HOH . 
D 4 HOH A 29 429 8 HOH HOH . 
D 4 HOH A 30 430 47 HOH HOH . 
D 4 HOH A 31 431 10 HOH HOH . 
D 4 HOH A 32 432 6 HOH HOH . 
D 4 HOH A 33 433 51 HOH HOH . 
D 4 HOH A 34 434 14 HOH HOH . 
D 4 HOH A 35 435 43 HOH HOH . 
D 4 HOH A 36 436 29 HOH HOH . 
D 4 HOH A 37 437 49 HOH HOH . 
D 4 HOH A 38 438 59 HOH HOH . 
D 4 HOH A 39 439 42 HOH HOH . 
D 4 HOH A 40 440 37 HOH HOH . 
D 4 HOH A 41 441 56 HOH HOH . 
D 4 HOH A 42 442 53 HOH HOH . 
D 4 HOH A 43 443 24 HOH HOH . 
D 4 HOH A 44 444 40 HOH HOH . 
D 4 HOH A 45 445 61 HOH HOH . 
D 4 HOH A 46 446 48 HOH HOH . 
D 4 HOH A 47 447 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KH9 . . . C 3 15.19 5.775 10.976 1 58.16 ? N1 KH9 302 A 1 
HETATM 2 C C7 KH9 . . . C 3 18.639 9.26 15.43 1 50.34 ? C7 KH9 302 A 1 
HETATM 3 C C8 KH9 . . . C 3 18.489 7.765 15.696 1 52.05 ? C8 KH9 302 A 1 
HETATM 4 N N2 KH9 . . . C 3 16.529 6.831 12.493 1 63.06 ? N2 KH9 302 A 1 
HETATM 5 C C9 KH9 . . . C 3 18.56 11.307 12.816 1 45.14 ? C9 KH9 302 A 1 
HETATM 6 O O1 KH9 . . . C 3 18.982 8.089 13.413 1 49.4 ? O1 KH9 302 A 1 
HETATM 7 C C1 KH9 . . . C 3 12.815 5.867 10.295 1 58.64 ? C1 KH9 302 A 1 
HETATM 8 O O5 KH9 . . . C 3 17.791 10.324 7.959 1 40.05 ? O5 KH9 302 A 1 
HETATM 9 C C5 KH9 . . . C 3 18.221 7.227 14.292 1 56.52 ? C5 KH9 302 A 1 
HETATM 10 C C6 KH9 . . . C 3 19.492 9.186 14.162 1 46.69 ? C6 KH9 302 A 1 
HETATM 11 N N3 KH9 . . . C 3 19.584 10.426 13.35 1 45.15 ? N3 KH9 302 A 1 
HETATM 12 C C4 KH9 . . . C 3 16.769 7.282 13.858 1 52.35 ? C4 KH9 302 A 1 
HETATM 13 O O4 KH9 . . . C 3 15.83 8.411 9.936 1 51.49 ? O4 KH9 302 A 1 
HETATM 14 C C3 KH9 . . . C 3 15.694 5.804 12.231 1 66.44 ? C3 KH9 302 A 1 
HETATM 15 O O3 KH9 . . . C 3 19.699 7.228 16.221 1 57.08 ? O3 KH9 302 A 1 
HETATM 16 C C2 KH9 . . . C 3 14.012 4.989 10.636 1 59.57 ? C2 KH9 302 A 1 
HETATM 17 N N4 KH9 . . . C 3 19.064 12.379 12.169 1 38.26 ? N4 KH9 302 A 1 
HETATM 18 N N KH9 . . . C 3 12.323 7.308 8.32 1 58.59 ? N KH9 302 A 1 
HETATM 19 C C KH9 . . . C 3 12.489 5.93 8.813 1 71.21 ? C KH9 302 A 1 
HETATM 20 O O KH9 . . . C 3 15.373 4.985 13.092 1 65.37 ? O KH9 302 A 1 
HETATM 21 C C10 KH9 . . . C 3 20.477 12.223 12.28 1 40.74 ? C10 KH9 302 A 1 
HETATM 22 C C11 KH9 . . . C 3 21.575 12.995 11.851 1 40.26 ? C11 KH9 302 A 1 
HETATM 23 C C12 KH9 . . . C 3 22.971 11.43 12.818 1 40.34 ? C12 KH9 302 A 1 
HETATM 24 C C13 KH9 . . . C 3 20.787 11.019 13.007 1 43.13 ? C13 KH9 302 A 1 
HETATM 25 C C14 KH9 . . . C 3 17.264 10.802 12.634 1 48.55 ? C14 KH9 302 A 1 
HETATM 26 C C15 KH9 . . . C 3 16.104 10.663 12.884 1 53.43 ? C15 KH9 302 A 1 
HETATM 27 C C16 KH9 . . . C 3 14.669 10.369 13.035 1 42.64 ? C16 KH9 302 A 1 
HETATM 28 C C17 KH9 . . . C 3 14.051 9.887 10.669 1 46.38 ? C17 KH9 302 A 1 
HETATM 29 C C18 KH9 . . . C 3 15.366 9.774 9.919 1 50.38 ? C18 KH9 302 A 1 
HETATM 30 C C19 KH9 . . . C 3 16.895 8.326 9.007 1 45.39 ? C19 KH9 302 A 1 
HETATM 31 C C20 KH9 . . . C 3 16.683 9.433 7.96 1 41.1 ? C20 KH9 302 A 1 
HETATM 32 C C21 KH9 . . . C 3 15.411 10.145 8.444 1 40.28 ? C21 KH9 302 A 1 
HETATM 33 C C22 KH9 . . . C 3 15.916 6.319 7.798 1 46.18 ? C22 KH9 302 A 1 
HETATM 34 C C23 KH9 . . . C 3 17.592 5.022 7.688 1 47.61 ? C23 KH9 302 A 1 
HETATM 35 C C24 KH9 . . . C 3 18.554 4.02 7.457 1 45.85 ? C24 KH9 302 A 1 
HETATM 36 C C25 KH9 . . . C 3 20.063 5.354 8.592 1 41.58 ? C25 KH9 302 A 1 
HETATM 37 C C26 KH9 . . . C 3 18.018 6.145 8.383 1 45.33 ? C26 KH9 302 A 1 
HETATM 38 C C27 KH9 . . . C 3 13.004 8.668 12.57 1 53.56 ? C27 KH9 302 A 1 
HETATM 39 C C28 KH9 . . . C 3 11.675 9.372 12.732 1 55.76 ? C28 KH9 302 A 1 
HETATM 40 N N10 KH9 . . . C 3 16.261 5.146 7.331 1 47.95 ? N10 KH9 302 A 1 
HETATM 41 N N11 KH9 . . . C 3 18.304 2.89 6.785 1 44.04 ? N11 KH9 302 A 1 
HETATM 42 N N12 KH9 . . . C 3 19.802 4.224 7.929 1 40.28 ? N12 KH9 302 A 1 
HETATM 43 N N13 KH9 . . . C 3 19.244 6.369 8.87 1 40.94 ? N13 KH9 302 A 1 
HETATM 44 N N5 KH9 . . . C 3 21.45 14.143 11.176 1 41.28 ? N5 KH9 302 A 1 
HETATM 45 N N6 KH9 . . . C 3 22.824 12.568 12.138 1 42.12 ? N6 KH9 302 A 1 
HETATM 46 N N7 KH9 . . . C 3 22.028 10.609 13.282 1 40.14 ? N7 KH9 302 A 1 
HETATM 47 N N8 KH9 . . . C 3 14.155 9.412 12.057 1 50.73 ? N8 KH9 302 A 1 
HETATM 48 N N9 KH9 . . . C 3 16.93 6.983 8.442 1 45.98 ? N9 KH9 302 A 1 
HETATM 49 O O2 KH9 . . . C 3 19.328 9.954 16.463 1 47.36 ? O2 KH9 302 A 1 
HETATM 50 O O6 KH9 . . . C 3 15.529 11.551 8.246 1 37.1 ? O6 KH9 302 A 1 
HETATM 51 O O7 KH9 . . . C 3 11.697 10.67 12.588 1 55 ? O7 KH9 302 A 1 
HETATM 52 O O8 KH9 . . . C 3 10.663 8.755 12.987 1 67.54 ? O8 KH9 302 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           52 
#