data_7ZZB # _model_server_result.job_id 7HqkavVKKtRjVuRcZnlBMA _model_server_result.datetime_utc '2025-01-10 15:12:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zzb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZZB # _exptl.entry_id 7ZZB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 712.674 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZZB _cell.length_a 62.942 _cell.length_b 74.065 _cell.length_c 118.528 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZZB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.942 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.942 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H36 N14 O9' _chem_comp.formula_weight 712.674 _chem_comp.id KGX _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylcarbamoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C21 KGX sing 193 n n N6 C18 KGX sing 194 n y N6 C17 KGX doub 195 n y C21 C18 KGX doub 196 n y C21 N8 KGX sing 197 n y C18 C19 KGX sing 198 n y C17 N5 KGX sing 199 n y C15 O6 KGX sing 200 n n C15 C16 KGX sing 201 n n C15 C14 KGX sing 202 n n N8 C20 KGX doub 203 n y O5 C16 KGX sing 204 n n C19 N5 KGX sing 205 n y C19 N7 KGX doub 206 n y N5 C14 KGX sing 207 n n C16 C13 KGX sing 208 n n C20 N7 KGX sing 209 n y C14 O4 KGX sing 210 n n N C KGX sing 211 n n O4 C13 KGX sing 212 n n C13 C12 KGX sing 213 n n C C1 KGX sing 214 n n C1 N1 KGX sing 215 n n C12 N4 KGX sing 216 n n N1 C2 KGX sing 217 n n N13 C27 KGX sing 218 n n C27 N12 KGX doub 219 n y C27 C24 KGX sing 220 n y N4 C22 KGX sing 221 n n N4 C11 KGX sing 222 n n N12 C26 KGX sing 223 n y N10 C24 KGX sing 224 n y N10 C8 KGX doub 225 n y C24 C25 KGX doub 226 n y C2 N2 KGX sing 227 n n C2 O KGX doub 228 n n O8 C23 KGX doub 229 n n C22 C23 KGX sing 230 n n N2 C3 KGX sing 231 n n C23 O7 KGX sing 232 n n C8 C9 KGX sing 233 n n C8 N3 KGX sing 234 n y C26 N11 KGX doub 235 n y C10 C9 KGX trip 236 n n C10 C11 KGX sing 237 n n C25 N11 KGX sing 238 n y C25 N3 KGX sing 239 n y O1 C5 KGX sing 240 n n O1 C4 KGX sing 241 n n N3 C5 KGX sing 242 n n C3 C4 KGX sing 243 n n C5 C6 KGX sing 244 n n C4 C7 KGX sing 245 n n C6 C7 KGX sing 246 n n C6 O3 KGX sing 247 n n C7 O2 KGX sing 248 n n N1 H1 KGX sing 249 n n C7 H2 KGX sing 250 n n N2 H3 KGX sing 251 n n C1 H4 KGX sing 252 n n C1 H5 KGX sing 253 n n O5 H6 KGX sing 254 n n C5 H7 KGX sing 255 n n C6 H8 KGX sing 256 n n C4 H9 KGX sing 257 n n C3 H10 KGX sing 258 n n C3 H11 KGX sing 259 n n O3 H12 KGX sing 260 n n N H14 KGX sing 261 n n N H15 KGX sing 262 n n C H17 KGX sing 263 n n C H18 KGX sing 264 n n C11 H19 KGX sing 265 n n C11 H20 KGX sing 266 n n C12 H21 KGX sing 267 n n C12 H22 KGX sing 268 n n C13 H23 KGX sing 269 n n C14 H24 KGX sing 270 n n C15 H25 KGX sing 271 n n C16 H26 KGX sing 272 n n C17 H27 KGX sing 273 n n C20 H28 KGX sing 274 n n C22 H29 KGX sing 275 n n C22 H30 KGX sing 276 n n C26 H31 KGX sing 277 n n N13 H32 KGX sing 278 n n N13 H33 KGX sing 279 n n N9 H34 KGX sing 280 n n N9 H35 KGX sing 281 n n O2 H36 KGX sing 282 n n O6 H37 KGX sing 283 n n O7 H38 KGX sing 284 n n # _atom_sites.entry_id 7ZZB _atom_sites.fract_transf_matrix[1][1] 0.015888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 265 CIT CIT . C 3 KGX A 1 302 1 KGX XXX . D 4 HOH A 1 401 146 HOH HOH . D 4 HOH A 2 402 90 HOH HOH . D 4 HOH A 3 403 46 HOH HOH . D 4 HOH A 4 404 5 HOH HOH . D 4 HOH A 5 405 64 HOH HOH . D 4 HOH A 6 406 71 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 22 HOH HOH . D 4 HOH A 9 409 38 HOH HOH . D 4 HOH A 10 410 48 HOH HOH . D 4 HOH A 11 411 148 HOH HOH . D 4 HOH A 12 412 76 HOH HOH . D 4 HOH A 13 413 30 HOH HOH . D 4 HOH A 14 414 121 HOH HOH . D 4 HOH A 15 415 25 HOH HOH . D 4 HOH A 16 416 95 HOH HOH . D 4 HOH A 17 417 14 HOH HOH . D 4 HOH A 18 418 134 HOH HOH . D 4 HOH A 19 419 89 HOH HOH . D 4 HOH A 20 420 3 HOH HOH . D 4 HOH A 21 421 4 HOH HOH . D 4 HOH A 22 422 1 HOH HOH . D 4 HOH A 23 423 13 HOH HOH . D 4 HOH A 24 424 131 HOH HOH . D 4 HOH A 25 425 10 HOH HOH . D 4 HOH A 26 426 43 HOH HOH . D 4 HOH A 27 427 149 HOH HOH . D 4 HOH A 28 428 129 HOH HOH . D 4 HOH A 29 429 51 HOH HOH . D 4 HOH A 30 430 16 HOH HOH . D 4 HOH A 31 431 65 HOH HOH . D 4 HOH A 32 432 20 HOH HOH . D 4 HOH A 33 433 119 HOH HOH . D 4 HOH A 34 434 24 HOH HOH . D 4 HOH A 35 435 18 HOH HOH . D 4 HOH A 36 436 32 HOH HOH . D 4 HOH A 37 437 128 HOH HOH . D 4 HOH A 38 438 55 HOH HOH . D 4 HOH A 39 439 41 HOH HOH . D 4 HOH A 40 440 122 HOH HOH . D 4 HOH A 41 441 7 HOH HOH . D 4 HOH A 42 442 6 HOH HOH . D 4 HOH A 43 443 9 HOH HOH . D 4 HOH A 44 444 109 HOH HOH . D 4 HOH A 45 445 35 HOH HOH . D 4 HOH A 46 446 118 HOH HOH . D 4 HOH A 47 447 2 HOH HOH . D 4 HOH A 48 448 75 HOH HOH . D 4 HOH A 49 449 136 HOH HOH . D 4 HOH A 50 450 63 HOH HOH . D 4 HOH A 51 451 127 HOH HOH . D 4 HOH A 52 452 137 HOH HOH . D 4 HOH A 53 453 84 HOH HOH . D 4 HOH A 54 454 135 HOH HOH . D 4 HOH A 55 455 141 HOH HOH . D 4 HOH A 56 456 56 HOH HOH . D 4 HOH A 57 457 92 HOH HOH . D 4 HOH A 58 458 15 HOH HOH . D 4 HOH A 59 459 91 HOH HOH . D 4 HOH A 60 460 58 HOH HOH . D 4 HOH A 61 461 40 HOH HOH . D 4 HOH A 62 462 49 HOH HOH . D 4 HOH A 63 463 115 HOH HOH . D 4 HOH A 64 464 8 HOH HOH . D 4 HOH A 65 465 34 HOH HOH . D 4 HOH A 66 466 31 HOH HOH . D 4 HOH A 67 467 29 HOH HOH . D 4 HOH A 68 468 100 HOH HOH . D 4 HOH A 69 469 103 HOH HOH . D 4 HOH A 70 470 54 HOH HOH . D 4 HOH A 71 471 11 HOH HOH . D 4 HOH A 72 472 47 HOH HOH . D 4 HOH A 73 473 142 HOH HOH . D 4 HOH A 74 474 12 HOH HOH . D 4 HOH A 75 475 150 HOH HOH . D 4 HOH A 76 476 36 HOH HOH . D 4 HOH A 77 477 144 HOH HOH . D 4 HOH A 78 478 87 HOH HOH . D 4 HOH A 79 479 108 HOH HOH . D 4 HOH A 80 480 83 HOH HOH . D 4 HOH A 81 481 96 HOH HOH . D 4 HOH A 82 482 17 HOH HOH . D 4 HOH A 83 483 52 HOH HOH . D 4 HOH A 84 484 53 HOH HOH . D 4 HOH A 85 485 125 HOH HOH . D 4 HOH A 86 486 140 HOH HOH . D 4 HOH A 87 487 123 HOH HOH . D 4 HOH A 88 488 124 HOH HOH . D 4 HOH A 89 489 151 HOH HOH . D 4 HOH A 90 490 88 HOH HOH . D 4 HOH A 91 491 138 HOH HOH . D 4 HOH A 92 492 93 HOH HOH . D 4 HOH A 93 493 79 HOH HOH . D 4 HOH A 94 494 78 HOH HOH . D 4 HOH A 95 495 98 HOH HOH . D 4 HOH A 96 496 28 HOH HOH . D 4 HOH A 97 497 130 HOH HOH . D 4 HOH A 98 498 73 HOH HOH . D 4 HOH A 99 499 27 HOH HOH . D 4 HOH A 100 500 145 HOH HOH . D 4 HOH A 101 501 45 HOH HOH . D 4 HOH A 102 502 44 HOH HOH . D 4 HOH A 103 503 70 HOH HOH . D 4 HOH A 104 504 120 HOH HOH . D 4 HOH A 105 505 152 HOH HOH . D 4 HOH A 106 506 104 HOH HOH . D 4 HOH A 107 507 154 HOH HOH . D 4 HOH A 108 508 61 HOH HOH . D 4 HOH A 109 509 143 HOH HOH . D 4 HOH A 110 510 86 HOH HOH . D 4 HOH A 111 511 67 HOH HOH . D 4 HOH A 112 512 139 HOH HOH . D 4 HOH A 113 513 69 HOH HOH . D 4 HOH A 114 514 114 HOH HOH . D 4 HOH A 115 515 57 HOH HOH . D 4 HOH A 116 516 66 HOH HOH . D 4 HOH A 117 517 133 HOH HOH . D 4 HOH A 118 518 23 HOH HOH . D 4 HOH A 119 519 155 HOH HOH . D 4 HOH A 120 520 82 HOH HOH . D 4 HOH A 121 521 147 HOH HOH . D 4 HOH A 122 522 80 HOH HOH . D 4 HOH A 123 523 153 HOH HOH . D 4 HOH A 124 524 107 HOH HOH . D 4 HOH A 125 525 77 HOH HOH . D 4 HOH A 126 526 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KGX . . . C 3 15.765 5.312 11.075 1 52.39 ? N1 KGX 302 A 1 HETATM 2 C C7 KGX . . . C 3 18.611 7.752 15.674 1 32.33 ? C7 KGX 302 A 1 HETATM 3 C C8 KGX . . . C 3 18.688 11.218 12.856 1 25.46 ? C8 KGX 302 A 1 HETATM 4 N N2 KGX . . . C 3 16.459 6.821 12.633 1 42.74 ? N2 KGX 302 A 1 HETATM 5 C C9 KGX . . . C 3 17.313 10.884 12.946 1 26.05 ? C9 KGX 302 A 1 HETATM 6 O O1 KGX . . . C 3 18.977 8.166 13.365 1 30.2 ? O1 KGX 302 A 1 HETATM 7 C C1 KGX . . . C 3 15.17 4.058 10.635 1 56.3 ? C1 KGX 302 A 1 HETATM 8 O O5 KGX . . . C 3 15.565 11.513 8.322 1 24.28 ? O5 KGX 302 A 1 HETATM 9 C C5 KGX . . . C 3 19.578 9.182 14.147 1 28.27 ? C5 KGX 302 A 1 HETATM 10 C C6 KGX . . . C 3 18.751 9.245 15.427 1 30.1 ? C6 KGX 302 A 1 HETATM 11 N N3 KGX . . . C 3 19.687 10.41 13.381 1 26.3 ? N3 KGX 302 A 1 HETATM 12 C C4 KGX . . . C 3 18.306 7.242 14.268 1 32.98 ? C4 KGX 302 A 1 HETATM 13 O O4 KGX . . . C 3 15.922 8.364 9.937 1 27.51 ? O4 KGX 302 A 1 HETATM 14 C C3 KGX . . . C 3 16.82 7.252 13.966 1 36.61 ? C3 KGX 302 A 1 HETATM 15 O O3 KGX . . . C 3 19.416 9.915 16.487 1 31.08 ? O3 KGX 302 A 1 HETATM 16 C C2 KGX . . . C 3 16.1 5.55 12.367 1 48.06 ? C2 KGX 302 A 1 HETATM 17 N N4 KGX . . . C 3 14.27 9.388 12.036 1 29.45 ? N4 KGX 302 A 1 HETATM 18 N N KGX . . . C 3 13.212 3.262 9.368 1 58.88 ? N KGX 302 A 1 HETATM 19 C C KGX . . . C 3 13.704 4.262 10.331 1 58.03 ? C KGX 302 A 1 HETATM 20 O O KGX . . . C 3 16.114 4.67 13.228 1 47.55 ? O KGX 302 A 1 HETATM 21 C C10 KGX . . . C 3 16.129 10.753 12.922 1 28.37 ? C10 KGX 302 A 1 HETATM 22 C C11 KGX . . . C 3 14.693 10.428 12.98 1 29.06 ? C11 KGX 302 A 1 HETATM 23 C C12 KGX . . . C 3 14.141 9.835 10.639 1 27.11 ? C12 KGX 302 A 1 HETATM 24 C C13 KGX . . . C 3 15.487 9.738 9.953 1 26.93 ? C13 KGX 302 A 1 HETATM 25 C C14 KGX . . . C 3 16.934 8.286 8.939 1 26.21 ? C14 KGX 302 A 1 HETATM 26 C C15 KGX . . . C 3 16.704 9.418 7.93 1 24.91 ? C15 KGX 302 A 1 HETATM 27 C C16 KGX . . . C 3 15.447 10.112 8.476 1 24.47 ? C16 KGX 302 A 1 HETATM 28 C C17 KGX . . . C 3 15.963 6.308 7.669 1 28.34 ? C17 KGX 302 A 1 HETATM 29 C C18 KGX . . . C 3 17.651 5.018 7.614 1 26.62 ? C18 KGX 302 A 1 HETATM 30 C C19 KGX . . . C 3 18.035 6.126 8.35 1 26.49 ? C19 KGX 302 A 1 HETATM 31 C C20 KGX . . . C 3 20.072 5.346 8.639 1 25.67 ? C20 KGX 302 A 1 HETATM 32 C C21 KGX . . . C 3 18.626 4.021 7.414 1 26.79 ? C21 KGX 302 A 1 HETATM 33 C C22 KGX . . . C 3 13.098 8.655 12.515 1 35.77 ? C22 KGX 302 A 1 HETATM 34 C C23 KGX . . . C 3 11.864 9.461 12.855 1 41.46 ? C23 KGX 302 A 1 HETATM 35 C C24 KGX . . . C 3 20.534 12.163 12.362 1 24.31 ? C24 KGX 302 A 1 HETATM 36 C C25 KGX . . . C 3 20.874 11.021 13.066 1 23.89 ? C25 KGX 302 A 1 HETATM 37 C C26 KGX . . . C 3 23.026 11.433 12.866 1 25.54 ? C26 KGX 302 A 1 HETATM 38 C C27 KGX . . . C 3 21.593 12.955 11.884 1 24.02 ? C27 KGX 302 A 1 HETATM 39 N N10 KGX . . . C 3 19.157 12.29 12.248 1 24.41 ? N10 KGX 302 A 1 HETATM 40 N N11 KGX . . . C 3 22.109 10.6 13.358 1 23.87 ? N11 KGX 302 A 1 HETATM 41 N N12 KGX . . . C 3 22.848 12.559 12.175 1 24.31 ? N12 KGX 302 A 1 HETATM 42 N N13 KGX . . . C 3 21.427 14.039 11.116 1 23.02 ? N13 KGX 302 A 1 HETATM 43 N N5 KGX . . . C 3 16.947 6.96 8.37 1 26.07 ? N5 KGX 302 A 1 HETATM 44 N N6 KGX . . . C 3 16.332 5.142 7.192 1 28.64 ? N6 KGX 302 A 1 HETATM 45 N N7 KGX . . . C 3 19.239 6.347 8.901 1 26.65 ? N7 KGX 302 A 1 HETATM 46 N N8 KGX . . . C 3 19.852 4.234 7.936 1 25.43 ? N8 KGX 302 A 1 HETATM 47 N N9 KGX . . . C 3 18.401 2.869 6.761 1 28.52 ? N9 KGX 302 A 1 HETATM 48 O O2 KGX . . . C 3 19.786 7.184 16.249 1 35.3 ? O2 KGX 302 A 1 HETATM 49 O O6 KGX . . . C 3 17.85 10.268 7.961 1 24.9 ? O6 KGX 302 A 1 HETATM 50 O O7 KGX . . . C 3 10.923 8.964 13.448 1 47.7 ? O7 KGX 302 A 1 HETATM 51 O O8 KGX . . . C 3 11.878 10.719 12.484 1 42.13 ? O8 KGX 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #