data_7ZZC
#
_model_server_result.job_id            BALLajo5bdvRzzPADuQVzg 
_model_server_result.datetime_utc      '2025-01-10 10:56:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zzc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7ZZC 
#
_exptl.entry_id    7ZZC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              733.713 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylsulfonylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZZC 
_cell.length_a            63.2 
_cell.length_b            74.943 
_cell.length_c            119.483 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZZC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.2 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.2 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H35 N13 O10 S' 
_chem_comp.formula_weight    733.713 
_chem_comp.id                KIG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethylsulfonylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C16 KIG sing 206 n n 
N5 C15 KIG sing 207 n y 
N5 C14 KIG doub 208 n y 
C16 C15 KIG doub 209 n y 
C16 N7 KIG sing 210 n y 
C15 C18 KIG sing 211 n y 
C14 N4 KIG sing 212 n y 
O6 C19 KIG sing 213 n n 
C19 C20 KIG sing 214 n n 
C19 C13 KIG sing 215 n n 
N7 C17 KIG doub 216 n y 
O7 C20 KIG sing 217 n n 
N4 C18 KIG sing 218 n y 
N4 C13 KIG sing 219 n n 
C18 N8 KIG doub 220 n y 
C20 C12 KIG sing 221 n n 
C17 N8 KIG sing 222 n y 
C13 O5 KIG sing 223 n n 
O5 C12 KIG sing 224 n n 
C12 C11 KIG sing 225 n n 
N C KIG sing 226 n n 
C11 N3 KIG sing 227 n n 
N10 C22 KIG sing 228 n n 
C C1 KIG sing 229 n n 
O1 S KIG doub 230 n n 
C22 N11 KIG doub 231 n y 
C22 C21 KIG sing 232 n y 
C1 S KIG sing 233 n n 
N3 C9 KIG sing 234 n n 
N3 C8 KIG sing 235 n n 
N11 C23 KIG sing 236 n y 
N9 C21 KIG sing 237 n y 
N9 C5 KIG doub 238 n y 
C21 C24 KIG doub 239 n y 
O4 C10 KIG doub 240 n n 
S O KIG doub 241 n n 
S N1 KIG sing 242 n n 
C9 C10 KIG sing 243 n n 
C23 N12 KIG doub 244 n y 
C5 C6 KIG sing 245 n n 
C5 N2 KIG sing 246 n y 
C6 C7 KIG trip 247 n n 
C7 C8 KIG sing 248 n n 
C10 O3 KIG sing 249 n n 
C24 N12 KIG sing 250 n y 
C24 N2 KIG sing 251 n y 
O2 C3 KIG sing 252 n n 
O2 C4 KIG sing 253 n n 
C2 N1 KIG sing 254 n n 
C2 C3 KIG sing 255 n n 
N2 C4 KIG sing 256 n n 
C3 C26 KIG sing 257 n n 
C4 C25 KIG sing 258 n n 
C25 C26 KIG sing 259 n n 
C25 O8 KIG sing 260 n n 
C26 O9 KIG sing 261 n n 
N1 H1 KIG sing 262 n n 
C8 H2 KIG sing 263 n n 
C8 H3 KIG sing 264 n n 
C9 H4 KIG sing 265 n n 
C9 H5 KIG sing 266 n n 
C1 H6 KIG sing 267 n n 
C1 H7 KIG sing 268 n n 
C4 H9 KIG sing 269 n n 
C3 H10 KIG sing 270 n n 
O3 H11 KIG sing 271 n n 
C2 H12 KIG sing 272 n n 
C2 H13 KIG sing 273 n n 
N H14 KIG sing 274 n n 
N H15 KIG sing 275 n n 
C H17 KIG sing 276 n n 
C H18 KIG sing 277 n n 
C11 H19 KIG sing 278 n n 
C11 H20 KIG sing 279 n n 
C12 H21 KIG sing 280 n n 
C13 H22 KIG sing 281 n n 
C14 H23 KIG sing 282 n n 
C17 H24 KIG sing 283 n n 
C19 H25 KIG sing 284 n n 
C20 H26 KIG sing 285 n n 
C23 H27 KIG sing 286 n n 
C25 H28 KIG sing 287 n n 
C26 H29 KIG sing 288 n n 
N10 H30 KIG sing 289 n n 
N10 H31 KIG sing 290 n n 
N6 H32 KIG sing 291 n n 
N6 H33 KIG sing 292 n n 
O6 H34 KIG sing 293 n n 
O7 H35 KIG sing 294 n n 
O8 H36 KIG sing 295 n n 
O9 H37 KIG sing 296 n n 
#
_atom_sites.entry_id                     7ZZC 
_atom_sites.fract_transf_matrix[1][1]    0.015823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013343 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 265 CIT CIT . 
C 3 GOL A 1 302 266 GOL GOL . 
D 4 KIG A 1 303 1 KIG XXX . 
E 5 HOH A 1 401 47 HOH HOH . 
E 5 HOH A 2 402 2 HOH HOH . 
E 5 HOH A 3 403 11 HOH HOH . 
E 5 HOH A 4 404 12 HOH HOH . 
E 5 HOH A 5 405 33 HOH HOH . 
E 5 HOH A 6 406 55 HOH HOH . 
E 5 HOH A 7 407 37 HOH HOH . 
E 5 HOH A 8 408 15 HOH HOH . 
E 5 HOH A 9 409 9 HOH HOH . 
E 5 HOH A 10 410 65 HOH HOH . 
E 5 HOH A 11 411 48 HOH HOH . 
E 5 HOH A 12 412 46 HOH HOH . 
E 5 HOH A 13 413 5 HOH HOH . 
E 5 HOH A 14 414 20 HOH HOH . 
E 5 HOH A 15 415 13 HOH HOH . 
E 5 HOH A 16 416 16 HOH HOH . 
E 5 HOH A 17 417 26 HOH HOH . 
E 5 HOH A 18 418 50 HOH HOH . 
E 5 HOH A 19 419 74 HOH HOH . 
E 5 HOH A 20 420 18 HOH HOH . 
E 5 HOH A 21 421 72 HOH HOH . 
E 5 HOH A 22 422 3 HOH HOH . 
E 5 HOH A 23 423 1 HOH HOH . 
E 5 HOH A 24 424 54 HOH HOH . 
E 5 HOH A 25 425 4 HOH HOH . 
E 5 HOH A 26 426 40 HOH HOH . 
E 5 HOH A 27 427 14 HOH HOH . 
E 5 HOH A 28 428 76 HOH HOH . 
E 5 HOH A 29 429 6 HOH HOH . 
E 5 HOH A 30 430 41 HOH HOH . 
E 5 HOH A 31 431 25 HOH HOH . 
E 5 HOH A 32 432 7 HOH HOH . 
E 5 HOH A 33 433 8 HOH HOH . 
E 5 HOH A 34 434 19 HOH HOH . 
E 5 HOH A 35 435 30 HOH HOH . 
E 5 HOH A 36 436 64 HOH HOH . 
E 5 HOH A 37 437 77 HOH HOH . 
E 5 HOH A 38 438 79 HOH HOH . 
E 5 HOH A 39 439 49 HOH HOH . 
E 5 HOH A 40 440 73 HOH HOH . 
E 5 HOH A 41 441 59 HOH HOH . 
E 5 HOH A 42 442 35 HOH HOH . 
E 5 HOH A 43 443 29 HOH HOH . 
E 5 HOH A 44 444 45 HOH HOH . 
E 5 HOH A 45 445 34 HOH HOH . 
E 5 HOH A 46 446 22 HOH HOH . 
E 5 HOH A 47 447 38 HOH HOH . 
E 5 HOH A 48 448 53 HOH HOH . 
E 5 HOH A 49 449 36 HOH HOH . 
E 5 HOH A 50 450 24 HOH HOH . 
E 5 HOH A 51 451 71 HOH HOH . 
E 5 HOH A 52 452 27 HOH HOH . 
E 5 HOH A 53 453 44 HOH HOH . 
E 5 HOH A 54 454 68 HOH HOH . 
E 5 HOH A 55 455 61 HOH HOH . 
E 5 HOH A 56 456 69 HOH HOH . 
E 5 HOH A 57 457 51 HOH HOH . 
E 5 HOH A 58 458 78 HOH HOH . 
E 5 HOH A 59 459 67 HOH HOH . 
E 5 HOH A 60 460 17 HOH HOH . 
E 5 HOH A 61 461 52 HOH HOH . 
E 5 HOH A 62 462 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 KIG . . . D 4 16.071 6.393 13.519 1 65.9 ? N1 KIG 303 A 1 
HETATM 2 C C7 KIG . . . D 4 16.07 10.943 12.981 1 44.95 ? C7 KIG 303 A 1 
HETATM 3 C C8 KIG . . . D 4 14.633 10.641 13.04 1 44.57 ? C8 KIG 303 A 1 
HETATM 4 N N2 KIG . . . D 4 19.64 10.678 13.433 1 46.13 ? N2 KIG 303 A 1 
HETATM 5 C C9 KIG . . . D 4 13.054 8.841 12.666 1 54.37 ? C9 KIG 303 A 1 
HETATM 6 O O1 KIG . . . D 4 17.011 5.555 11.372 1 59.59 ? O1 KIG 303 A 1 
HETATM 7 C C1 KIG . . . D 4 14.658 4.608 11.932 1 67.31 ? C1 KIG 303 A 1 
HETATM 8 O O5 KIG . . . D 4 15.895 8.481 9.971 1 46.36 ? O5 KIG 303 A 1 
HETATM 9 C C5 KIG . . . D 4 18.637 11.457 12.879 1 42.38 ? C5 KIG 303 A 1 
HETATM 10 C C6 KIG . . . D 4 17.259 11.096 12.977 1 45.27 ? C6 KIG 303 A 1 
HETATM 11 N N3 KIG . . . D 4 14.202 9.578 12.132 1 51.36 ? N3 KIG 303 A 1 
HETATM 12 C C4 KIG . . . D 4 19.529 9.446 14.205 1 46.81 ? C4 KIG 303 A 1 
HETATM 13 O O4 KIG . . . D 4 11.666 10.753 12.382 1 50.86 ? O4 KIG 303 A 1 
HETATM 14 C C3 KIG . . . D 4 18.226 7.505 14.086 1 50.83 ? C3 KIG 303 A 1 
HETATM 15 O O3 KIG . . . D 4 11.057 9.259 13.908 1 65.02 ? O3 KIG 303 A 1 
HETATM 16 C C2 KIG . . . D 4 16.879 7.613 13.396 1 54.52 ? C2 KIG 303 A 1 
HETATM 17 N N4 KIG . . . D 4 17.013 7.069 8.46 1 41.84 ? N4 KIG 303 A 1 
HETATM 18 N N KIG . . . D 4 13.117 5.164 10.177 1 60.9 ? N KIG 303 A 1 
HETATM 19 C C KIG . . . D 4 13.857 5.742 11.305 1 58.52 ? C KIG 303 A 1 
HETATM 20 O O KIG . . . D 4 16.793 4.024 13.305 1 69.56 ? O KIG 303 A 1 
HETATM 21 C C10 KIG . . . D 4 11.828 9.637 13.048 1 55.11 ? C10 KIG 303 A 1 
HETATM 22 C C11 KIG . . . D 4 14.098 9.934 10.699 1 44.14 ? C11 KIG 303 A 1 
HETATM 23 C C12 KIG . . . D 4 15.438 9.847 9.987 1 45.08 ? C12 KIG 303 A 1 
HETATM 24 C C13 KIG . . . D 4 16.962 8.416 9.039 1 42.16 ? C13 KIG 303 A 1 
HETATM 25 C C14 KIG . . . D 4 16.031 6.436 7.755 1 42.05 ? C14 KIG 303 A 1 
HETATM 26 C C15 KIG . . . D 4 17.684 5.107 7.743 1 40.32 ? C15 KIG 303 A 1 
HETATM 27 C C16 KIG . . . D 4 18.645 4.087 7.558 1 37.47 ? C16 KIG 303 A 1 
HETATM 28 C C17 KIG . . . D 4 20.106 5.393 8.791 1 33.92 ? C17 KIG 303 A 1 
HETATM 29 C C18 KIG . . . D 4 18.093 6.218 8.472 1 41.33 ? C18 KIG 303 A 1 
HETATM 30 C C19 KIG . . . D 4 16.741 9.538 8.006 1 36.26 ? C19 KIG 303 A 1 
HETATM 31 C C20 KIG . . . D 4 15.482 10.257 8.518 1 36.6 ? C20 KIG 303 A 1 
HETATM 32 C C21 KIG . . . D 4 20.476 12.421 12.376 1 38.48 ? C21 KIG 303 A 1 
HETATM 33 C C22 KIG . . . D 4 21.536 13.207 11.873 1 35.67 ? C22 KIG 303 A 1 
HETATM 34 C C23 KIG . . . D 4 22.977 11.695 12.868 1 38.79 ? C23 KIG 303 A 1 
HETATM 35 C C24 KIG . . . D 4 20.829 11.297 13.108 1 40.99 ? C24 KIG 303 A 1 
HETATM 36 C C25 KIG . . . D 4 18.575 9.463 15.395 1 49.13 ? C25 KIG 303 A 1 
HETATM 37 C C26 KIG . . . D 4 18.284 7.968 15.541 1 51.93 ? C26 KIG 303 A 1 
HETATM 38 N N10 KIG . . . D 4 21.366 14.323 11.151 1 34.69 ? N10 KIG 303 A 1 
HETATM 39 N N11 KIG . . . D 4 22.796 12.8 12.137 1 39.47 ? N11 KIG 303 A 1 
HETATM 40 N N12 KIG . . . D 4 22.061 10.884 13.401 1 38.21 ? N12 KIG 303 A 1 
HETATM 41 N N5 KIG . . . D 4 16.38 5.249 7.301 1 38.86 ? N5 KIG 303 A 1 
HETATM 42 N N6 KIG . . . D 4 18.423 2.976 6.847 1 38.11 ? N6 KIG 303 A 1 
HETATM 43 N N7 KIG . . . D 4 19.866 4.268 8.108 1 36.42 ? N7 KIG 303 A 1 
HETATM 44 N N8 KIG . . . D 4 19.288 6.421 9.026 1 36.67 ? N8 KIG 303 A 1 
HETATM 45 N N9 KIG . . . D 4 19.093 12.526 12.244 1 36.08 ? N9 KIG 303 A 1 
HETATM 46 O O2 KIG . . . D 4 19.116 8.386 13.363 1 49.11 ? O2 KIG 303 A 1 
HETATM 47 O O6 KIG . . . D 4 17.861 10.415 7.981 1 33.93 ? O6 KIG 303 A 1 
HETATM 48 O O7 KIG . . . D 4 15.617 11.668 8.373 1 29.34 ? O7 KIG 303 A 1 
HETATM 49 O O8 KIG . . . D 4 19.255 10.022 16.513 1 43.92 ? O8 KIG 303 A 1 
HETATM 50 O O9 KIG . . . D 4 19.349 7.303 16.211 1 50.73 ? O9 KIG 303 A 1 
HETATM 51 S S KIG . . . D 4 16.267 5.092 12.506 1 77.17 ? S KIG 303 A 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           51 
#