data_7ZZD # _model_server_result.job_id AIPLNwhbiwJGYJ121JSIqg _model_server_result.datetime_utc '2024-10-19 13:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zzd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZZD # _exptl.entry_id 7ZZD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 697.659 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZZD _cell.length_a 62.802 _cell.length_b 74.991 _cell.length_c 118.764 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZZD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.802 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.802 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H35 N13 O9' _chem_comp.formula_weight 697.659 _chem_comp.id KIC _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(3-azanylpropanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C25 KIC sing 193 n n N9 C22 KIC sing 194 n y N9 C21 KIC doub 195 n y C25 C22 KIC doub 196 n y C25 N11 KIC sing 197 n y C22 C23 KIC sing 198 n y C21 N8 KIC sing 199 n y O5 C19 KIC sing 200 n n C19 C20 KIC sing 201 n n C19 C18 KIC sing 202 n n N11 C24 KIC doub 203 n y O6 C20 KIC sing 204 n n C23 N8 KIC sing 205 n y C23 N10 KIC doub 206 n y N8 C18 KIC sing 207 n n C20 C17 KIC sing 208 n n C24 N10 KIC sing 209 n y C18 O4 KIC sing 210 n n O4 C17 KIC sing 211 n n C17 C16 KIC sing 212 n n C16 N7 KIC sing 213 n n C C1 KIC sing 214 n n C N KIC sing 215 n n C1 C2 KIC sing 216 n n N4 C10 KIC sing 217 n n C10 N5 KIC doub 218 n y C10 C9 KIC sing 219 n y N7 C26 KIC sing 220 n n N7 C15 KIC sing 221 n n N5 C11 KIC sing 222 n y N3 C9 KIC sing 223 n y N3 C8 KIC doub 224 n y C2 N1 KIC sing 225 n n C2 O KIC doub 226 n n C9 C12 KIC doub 227 n y C26 C27 KIC sing 228 n n O7 C27 KIC doub 229 n n N1 C3 KIC sing 230 n n C27 O8 KIC sing 231 n n C11 N6 KIC doub 232 n y C8 C13 KIC sing 233 n n C8 N2 KIC sing 234 n y C14 C13 KIC trip 235 n n C14 C15 KIC sing 236 n n C12 N6 KIC sing 237 n y C12 N2 KIC sing 238 n y N2 C5 KIC sing 239 n n O1 C5 KIC sing 240 n n O1 C4 KIC sing 241 n n C3 C4 KIC sing 242 n n C5 C6 KIC sing 243 n n C4 C7 KIC sing 244 n n C6 C7 KIC sing 245 n n C6 O2 KIC sing 246 n n C7 O3 KIC sing 247 n n N1 H1 KIC sing 248 n n C7 H2 KIC sing 249 n n C1 H3 KIC sing 250 n n C1 H4 KIC sing 251 n n O5 H5 KIC sing 252 n n C5 H6 KIC sing 253 n n C6 H7 KIC sing 254 n n C4 H8 KIC sing 255 n n C3 H9 KIC sing 256 n n C3 H10 KIC sing 257 n n O3 H11 KIC sing 258 n n N4 H12 KIC sing 259 n n N4 H13 KIC sing 260 n n N H14 KIC sing 261 n n N H15 KIC sing 262 n n C H17 KIC sing 263 n n C H18 KIC sing 264 n n C11 H19 KIC sing 265 n n C15 H20 KIC sing 266 n n C15 H21 KIC sing 267 n n C16 H22 KIC sing 268 n n C16 H23 KIC sing 269 n n C17 H24 KIC sing 270 n n C18 H25 KIC sing 271 n n C19 H26 KIC sing 272 n n C20 H27 KIC sing 273 n n C21 H28 KIC sing 274 n n C24 H29 KIC sing 275 n n C26 H30 KIC sing 276 n n C26 H31 KIC sing 277 n n N12 H32 KIC sing 278 n n N12 H33 KIC sing 279 n n O2 H35 KIC sing 280 n n O6 H36 KIC sing 281 n n O8 H37 KIC sing 282 n n # _atom_sites.entry_id 7ZZD _atom_sites.fract_transf_matrix[1][1] 0.015923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 301 1 CIT CIT . C 3 KIC A 1 302 1 KIC XXX . D 4 HOH A 1 401 54 HOH HOH . D 4 HOH A 2 402 11 HOH HOH . D 4 HOH A 3 403 81 HOH HOH . D 4 HOH A 4 404 108 HOH HOH . D 4 HOH A 5 405 65 HOH HOH . D 4 HOH A 6 406 133 HOH HOH . D 4 HOH A 7 407 70 HOH HOH . D 4 HOH A 8 408 4 HOH HOH . D 4 HOH A 9 409 78 HOH HOH . D 4 HOH A 10 410 6 HOH HOH . D 4 HOH A 11 411 110 HOH HOH . D 4 HOH A 12 412 27 HOH HOH . D 4 HOH A 13 413 18 HOH HOH . D 4 HOH A 14 414 69 HOH HOH . D 4 HOH A 15 415 62 HOH HOH . D 4 HOH A 16 416 14 HOH HOH . D 4 HOH A 17 417 61 HOH HOH . D 4 HOH A 18 418 44 HOH HOH . D 4 HOH A 19 419 24 HOH HOH . D 4 HOH A 20 420 57 HOH HOH . D 4 HOH A 21 421 60 HOH HOH . D 4 HOH A 22 422 21 HOH HOH . D 4 HOH A 23 423 74 HOH HOH . D 4 HOH A 24 424 52 HOH HOH . D 4 HOH A 25 425 28 HOH HOH . D 4 HOH A 26 426 2 HOH HOH . D 4 HOH A 27 427 37 HOH HOH . D 4 HOH A 28 428 5 HOH HOH . D 4 HOH A 29 429 59 HOH HOH . D 4 HOH A 30 430 132 HOH HOH . D 4 HOH A 31 431 7 HOH HOH . D 4 HOH A 32 432 9 HOH HOH . D 4 HOH A 33 433 56 HOH HOH . D 4 HOH A 34 434 73 HOH HOH . D 4 HOH A 35 435 42 HOH HOH . D 4 HOH A 36 436 138 HOH HOH . D 4 HOH A 37 437 76 HOH HOH . D 4 HOH A 38 438 20 HOH HOH . D 4 HOH A 39 439 101 HOH HOH . D 4 HOH A 40 440 12 HOH HOH . D 4 HOH A 41 441 3 HOH HOH . D 4 HOH A 42 442 82 HOH HOH . D 4 HOH A 43 443 8 HOH HOH . D 4 HOH A 44 444 31 HOH HOH . D 4 HOH A 45 445 135 HOH HOH . D 4 HOH A 46 446 23 HOH HOH . D 4 HOH A 47 447 22 HOH HOH . D 4 HOH A 48 448 114 HOH HOH . D 4 HOH A 49 449 1 HOH HOH . D 4 HOH A 50 450 26 HOH HOH . D 4 HOH A 51 451 41 HOH HOH . D 4 HOH A 52 452 127 HOH HOH . D 4 HOH A 53 453 90 HOH HOH . D 4 HOH A 54 454 49 HOH HOH . D 4 HOH A 55 455 98 HOH HOH . D 4 HOH A 56 456 17 HOH HOH . D 4 HOH A 57 457 10 HOH HOH . D 4 HOH A 58 458 84 HOH HOH . D 4 HOH A 59 459 47 HOH HOH . D 4 HOH A 60 460 39 HOH HOH . D 4 HOH A 61 461 106 HOH HOH . D 4 HOH A 62 462 16 HOH HOH . D 4 HOH A 63 463 134 HOH HOH . D 4 HOH A 64 464 45 HOH HOH . D 4 HOH A 65 465 128 HOH HOH . D 4 HOH A 66 466 30 HOH HOH . D 4 HOH A 67 467 15 HOH HOH . D 4 HOH A 68 468 122 HOH HOH . D 4 HOH A 69 469 137 HOH HOH . D 4 HOH A 70 470 13 HOH HOH . D 4 HOH A 71 471 55 HOH HOH . D 4 HOH A 72 472 58 HOH HOH . D 4 HOH A 73 473 32 HOH HOH . D 4 HOH A 74 474 118 HOH HOH . D 4 HOH A 75 475 50 HOH HOH . D 4 HOH A 76 476 124 HOH HOH . D 4 HOH A 77 477 117 HOH HOH . D 4 HOH A 78 478 89 HOH HOH . D 4 HOH A 79 479 120 HOH HOH . D 4 HOH A 80 480 40 HOH HOH . D 4 HOH A 81 481 92 HOH HOH . D 4 HOH A 82 482 77 HOH HOH . D 4 HOH A 83 483 105 HOH HOH . D 4 HOH A 84 484 129 HOH HOH . D 4 HOH A 85 485 123 HOH HOH . D 4 HOH A 86 486 95 HOH HOH . D 4 HOH A 87 487 35 HOH HOH . D 4 HOH A 88 488 46 HOH HOH . D 4 HOH A 89 489 51 HOH HOH . D 4 HOH A 90 490 33 HOH HOH . D 4 HOH A 91 491 36 HOH HOH . D 4 HOH A 92 492 99 HOH HOH . D 4 HOH A 93 493 63 HOH HOH . D 4 HOH A 94 494 130 HOH HOH . D 4 HOH A 95 495 80 HOH HOH . D 4 HOH A 96 496 25 HOH HOH . D 4 HOH A 97 497 131 HOH HOH . D 4 HOH A 98 498 71 HOH HOH . D 4 HOH A 99 499 79 HOH HOH . D 4 HOH A 100 500 104 HOH HOH . D 4 HOH A 101 501 113 HOH HOH . D 4 HOH A 102 502 88 HOH HOH . D 4 HOH A 103 503 136 HOH HOH . D 4 HOH A 104 504 87 HOH HOH . D 4 HOH A 105 505 66 HOH HOH . D 4 HOH A 106 506 119 HOH HOH . D 4 HOH A 107 507 125 HOH HOH . D 4 HOH A 108 508 72 HOH HOH . D 4 HOH A 109 509 43 HOH HOH . D 4 HOH A 110 510 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 KIC . . . C 3 16.317 6.923 12.559 1 39 ? N1 KIC 302 A 1 HETATM 2 C C7 KIC . . . C 3 18.314 7.94 15.707 1 30.92 ? C7 KIC 302 A 1 HETATM 3 C C8 KIC . . . C 3 18.484 11.336 12.841 1 24.23 ? C8 KIC 302 A 1 HETATM 4 N N2 KIC . . . C 3 19.486 10.549 13.38 1 30.35 ? N2 KIC 302 A 1 HETATM 5 C C9 KIC . . . C 3 20.316 12.302 12.327 1 24.49 ? C9 KIC 302 A 1 HETATM 6 O O1 KIC . . . C 3 18.777 8.293 13.409 1 35.44 ? O1 KIC 302 A 1 HETATM 7 C C1 KIC . . . C 3 15.959 5.244 10.872 1 47.22 ? C1 KIC 302 A 1 HETATM 8 O O5 KIC . . . C 3 17.76 10.323 7.881 1 27.22 ? O5 KIC 302 A 1 HETATM 9 C C5 KIC . . . C 3 19.369 9.33 14.172 1 34.72 ? C5 KIC 302 A 1 HETATM 10 C C6 KIC . . . C 3 18.548 9.424 15.455 1 33.37 ? C6 KIC 302 A 1 HETATM 11 N N3 KIC . . . C 3 18.935 12.409 12.209 1 27.17 ? N3 KIC 302 A 1 HETATM 12 C C4 KIC . . . C 3 18.026 7.425 14.297 1 35.48 ? C4 KIC 302 A 1 HETATM 13 O O4 KIC . . . C 3 15.829 8.42 9.901 1 32.35 ? O4 KIC 302 A 1 HETATM 14 C C3 KIC . . . C 3 16.566 7.473 13.885 1 36.27 ? C3 KIC 302 A 1 HETATM 15 O O3 KIC . . . C 3 19.505 7.346 16.204 1 37.24 ? O3 KIC 302 A 1 HETATM 16 C C2 KIC . . . C 3 16.223 5.617 12.312 1 55.7 ? C2 KIC 302 A 1 HETATM 17 N N4 KIC . . . C 3 21.186 14.214 11.114 1 27.43 ? N4 KIC 302 A 1 HETATM 18 N N KIC . . . C 3 14.51 3.317 11.219 1 49.69 ? N KIC 302 A 1 HETATM 19 C C KIC . . . C 3 15.808 3.729 10.678 1 49.96 ? C KIC 302 A 1 HETATM 20 O O KIC . . . C 3 16.349 4.759 13.183 1 49.06 ? O KIC 302 A 1 HETATM 21 C C10 KIC . . . C 3 21.367 13.098 11.83 1 26.24 ? C10 KIC 302 A 1 HETATM 22 C C11 KIC . . . C 3 22.821 11.577 12.789 1 24.29 ? C11 KIC 302 A 1 HETATM 23 C C12 KIC . . . C 3 20.672 11.166 13.04 1 24.36 ? C12 KIC 302 A 1 HETATM 24 C C13 KIC . . . C 3 17.12 10.979 12.923 1 24.51 ? C13 KIC 302 A 1 HETATM 25 C C14 KIC . . . C 3 15.938 10.814 12.92 1 28.88 ? C14 KIC 302 A 1 HETATM 26 C C15 KIC . . . C 3 14.505 10.484 12.97 1 33.03 ? C15 KIC 302 A 1 HETATM 27 C C16 KIC . . . C 3 14.012 9.847 10.624 1 24.14 ? C16 KIC 302 A 1 HETATM 28 C C17 KIC . . . C 3 15.359 9.78 9.923 1 29.12 ? C17 KIC 302 A 1 HETATM 29 C C18 KIC . . . C 3 16.862 8.358 8.933 1 30.41 ? C18 KIC 302 A 1 HETATM 30 C C19 KIC . . . C 3 16.613 9.477 7.912 1 25.09 ? C19 KIC 302 A 1 HETATM 31 C C20 KIC . . . C 3 15.357 10.179 8.454 1 29.42 ? C20 KIC 302 A 1 HETATM 32 C C21 KIC . . . C 3 15.887 6.367 7.683 1 30.83 ? C21 KIC 302 A 1 HETATM 33 C C22 KIC . . . C 3 17.552 5.05 7.65 1 28.98 ? C22 KIC 302 A 1 HETATM 34 C C23 KIC . . . C 3 17.965 6.176 8.339 1 28.2 ? C23 KIC 302 A 1 HETATM 35 C C24 KIC . . . C 3 20.003 5.383 8.599 1 28.49 ? C24 KIC 302 A 1 HETATM 36 C C25 KIC . . . C 3 18.514 4.041 7.448 1 28.79 ? C25 KIC 302 A 1 HETATM 37 C C26 KIC . . . C 3 12.95 8.676 12.537 1 34.16 ? C26 KIC 302 A 1 HETATM 38 C C27 KIC . . . C 3 11.61 9.359 12.691 1 47.1 ? C27 KIC 302 A 1 HETATM 39 N N10 KIC . . . C 3 19.177 6.399 8.853 1 27.93 ? N10 KIC 302 A 1 HETATM 40 N N11 KIC . . . C 3 19.754 4.247 7.945 1 25.4 ? N11 KIC 302 A 1 HETATM 41 N N12 KIC . . . C 3 18.281 2.917 6.765 1 28.37 ? N12 KIC 302 A 1 HETATM 42 N N5 KIC . . . C 3 22.63 12.697 12.086 1 29.57 ? N5 KIC 302 A 1 HETATM 43 N N6 KIC . . . C 3 21.911 10.748 13.307 1 26.33 ? N6 KIC 302 A 1 HETATM 44 N N7 KIC . . . C 3 14.098 9.436 12.035 1 30.63 ? N7 KIC 302 A 1 HETATM 45 N N8 KIC . . . C 3 16.887 7.025 8.351 1 30.1 ? N8 KIC 302 A 1 HETATM 46 N N9 KIC . . . C 3 16.23 5.178 7.249 1 30.19 ? N9 KIC 302 A 1 HETATM 47 O O2 KIC . . . C 3 19.288 10.022 16.511 1 33.46 ? O2 KIC 302 A 1 HETATM 48 O O6 KIC . . . C 3 15.479 11.583 8.291 1 27.07 ? O6 KIC 302 A 1 HETATM 49 O O7 KIC . . . C 3 11.6 10.665 12.552 1 43.7 ? O7 KIC 302 A 1 HETATM 50 O O8 KIC . . . C 3 10.611 8.714 12.937 1 59.27 ? O8 KIC 302 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #