data_7ZZG
#
_model_server_result.job_id            W0qmrfVAbR6dqPUJ0kRwBw 
_model_server_result.datetime_utc      '2025-01-10 15:05:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zzg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZZG 
#
_exptl.entry_id    7ZZG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              694.659 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZZG 
_cell.length_a            63.383 
_cell.length_b            75.341 
_cell.length_c            119.008 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZZG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.383 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.383 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H34 N14 O8' 
_chem_comp.formula_weight    694.659 
_chem_comp.id                KHL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},24~{R},25~{S},26~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-25,26-bis(oxidanyl)-27-oxa-2,4,6,9,14,17,20,22-octazatetracyclo[22.2.1.0^{2,10}.0^{3,8}]heptacosa-3(8),4,6,9-tetraen-11-yne-16,21-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N38 C37 KHL sing 193 n n 
N31 C32 KHL sing 194 n y 
N31 C30 KHL doub 195 n y 
C37 C32 KHL doub 196 n y 
C37 N36 KHL sing 197 n y 
C32 C33 KHL sing 198 n y 
C30 N29 KHL sing 199 n y 
O28 C25 KHL sing 200 n n 
N36 C35 KHL doub 201 n y 
C25 C26 KHL sing 202 n n 
C25 C24 KHL sing 203 n n 
O27 C26 KHL sing 204 n n 
C33 N29 KHL sing 205 n y 
C33 N34 KHL doub 206 n y 
N29 C24 KHL sing 207 n n 
C26 C22 KHL sing 208 n n 
C35 N34 KHL sing 209 n y 
C24 O23 KHL sing 210 n n 
C22 O23 KHL sing 211 n n 
C22 C21 KHL sing 212 n n 
C21 N19 KHL sing 213 n n 
C04 N03 KHL sing 214 n n 
C04 C05 KHL sing 215 n n 
O08 C07 KHL doub 216 n n 
N46 C45 KHL sing 217 n n 
N03 C02 KHL sing 218 n n 
C05 N06 KHL sing 219 n n 
C45 N44 KHL doub 220 n y 
C45 C40 KHL sing 221 n y 
C07 N06 KHL sing 222 n n 
C07 N09 KHL sing 223 n n 
C02 C20 KHL sing 224 n n 
C02 O01 KHL doub 225 n n 
N19 C20 KHL sing 226 n n 
N19 C18 KHL sing 227 n n 
N44 C43 KHL sing 228 n y 
N39 C40 KHL sing 229 n y 
N39 C15 KHL doub 230 n y 
C40 C41 KHL doub 231 n y 
N09 C10 KHL sing 232 n n 
C43 N42 KHL doub 233 n y 
C15 C16 KHL sing 234 n n 
C15 N14 KHL sing 235 n y 
C41 N42 KHL sing 236 n y 
C41 N14 KHL sing 237 n y 
C16 C17 KHL trip 238 n n 
C17 C18 KHL sing 239 n n 
N14 C13 KHL sing 240 n n 
O12 C13 KHL sing 241 n n 
O12 C11 KHL sing 242 n n 
C10 C11 KHL sing 243 n n 
C13 C47 KHL sing 244 n n 
C11 C48 KHL sing 245 n n 
C47 C48 KHL sing 246 n n 
C47 O50 KHL sing 247 n n 
C48 O49 KHL sing 248 n n 
C10 H1 KHL sing 249 n n 
C10 H2 KHL sing 250 n n 
C13 H3 KHL sing 251 n n 
C20 H4 KHL sing 252 n n 
C20 H5 KHL sing 253 n n 
C21 H6 KHL sing 254 n n 
C21 H7 KHL sing 255 n n 
C22 H8 KHL sing 256 n n 
C24 H9 KHL sing 257 n n 
C26 H10 KHL sing 258 n n 
C04 H11 KHL sing 259 n n 
C04 H12 KHL sing 260 n n 
C05 H13 KHL sing 261 n n 
C05 H14 KHL sing 262 n n 
C11 H15 KHL sing 263 n n 
C18 H16 KHL sing 264 n n 
C18 H17 KHL sing 265 n n 
C25 H18 KHL sing 266 n n 
C30 H19 KHL sing 267 n n 
C35 H20 KHL sing 268 n n 
C43 H21 KHL sing 269 n n 
C47 H22 KHL sing 270 n n 
C48 H23 KHL sing 271 n n 
N03 H24 KHL sing 272 n n 
N06 H25 KHL sing 273 n n 
N09 H26 KHL sing 274 n n 
N38 H28 KHL sing 275 n n 
N38 H29 KHL sing 276 n n 
N46 H30 KHL sing 277 n n 
N46 H31 KHL sing 278 n n 
O27 H32 KHL sing 279 n n 
O28 H33 KHL sing 280 n n 
O49 H34 KHL sing 281 n n 
O50 H35 KHL sing 282 n n 
#
_atom_sites.entry_id                     7ZZG 
_atom_sites.fract_transf_matrix[1][1]    0.015777 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013273 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008403 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 265 CIT CIT . 
C 3 KHL A 1 302 1 KHL LIG . 
D 4 HOH A 1 401 63 HOH HOH . 
D 4 HOH A 2 402 59 HOH HOH . 
D 4 HOH A 3 403 4 HOH HOH . 
D 4 HOH A 4 404 18 HOH HOH . 
D 4 HOH A 5 405 23 HOH HOH . 
D 4 HOH A 6 406 7 HOH HOH . 
D 4 HOH A 7 407 1 HOH HOH . 
D 4 HOH A 8 408 19 HOH HOH . 
D 4 HOH A 9 409 12 HOH HOH . 
D 4 HOH A 10 410 14 HOH HOH . 
D 4 HOH A 11 411 15 HOH HOH . 
D 4 HOH A 12 412 25 HOH HOH . 
D 4 HOH A 13 413 34 HOH HOH . 
D 4 HOH A 14 414 60 HOH HOH . 
D 4 HOH A 15 415 6 HOH HOH . 
D 4 HOH A 16 416 11 HOH HOH . 
D 4 HOH A 17 417 27 HOH HOH . 
D 4 HOH A 18 418 51 HOH HOH . 
D 4 HOH A 19 419 16 HOH HOH . 
D 4 HOH A 20 420 24 HOH HOH . 
D 4 HOH A 21 421 5 HOH HOH . 
D 4 HOH A 22 422 20 HOH HOH . 
D 4 HOH A 23 423 28 HOH HOH . 
D 4 HOH A 24 424 8 HOH HOH . 
D 4 HOH A 25 425 56 HOH HOH . 
D 4 HOH A 26 426 21 HOH HOH . 
D 4 HOH A 27 427 29 HOH HOH . 
D 4 HOH A 28 428 44 HOH HOH . 
D 4 HOH A 29 429 22 HOH HOH . 
D 4 HOH A 30 430 43 HOH HOH . 
D 4 HOH A 31 431 46 HOH HOH . 
D 4 HOH A 32 432 2 HOH HOH . 
D 4 HOH A 33 433 30 HOH HOH . 
D 4 HOH A 34 434 32 HOH HOH . 
D 4 HOH A 35 435 48 HOH HOH . 
D 4 HOH A 36 436 35 HOH HOH . 
D 4 HOH A 37 437 45 HOH HOH . 
D 4 HOH A 38 438 10 HOH HOH . 
D 4 HOH A 39 439 3 HOH HOH . 
D 4 HOH A 40 440 9 HOH HOH . 
D 4 HOH A 41 441 31 HOH HOH . 
D 4 HOH A 42 442 33 HOH HOH . 
D 4 HOH A 43 443 49 HOH HOH . 
D 4 HOH A 44 444 67 HOH HOH . 
D 4 HOH A 45 445 53 HOH HOH . 
D 4 HOH A 46 446 65 HOH HOH . 
D 4 HOH A 47 447 38 HOH HOH . 
D 4 HOH A 48 448 55 HOH HOH . 
D 4 HOH A 49 449 61 HOH HOH . 
D 4 HOH A 50 450 57 HOH HOH . 
D 4 HOH A 51 451 39 HOH HOH . 
D 4 HOH A 52 452 68 HOH HOH . 
D 4 HOH A 53 453 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 KHL . . . C 3 17.443 6.534 14.035 1 45.75 ? C10 KHL 302 A 1 
HETATM 2 C C13 KHL . . . C 3 19.753 9.331 14.092 1 35.04 ? C13 KHL 302 A 1 
HETATM 3 C C15 KHL . . . C 3 18.669 11.402 12.833 1 30.45 ? C15 KHL 302 A 1 
HETATM 4 C C17 KHL . . . C 3 15.977 10.737 13.135 1 38.07 ? C17 KHL 302 A 1 
HETATM 5 C C20 KHL . . . C 3 12.769 8.657 12.468 1 36.92 ? C20 KHL 302 A 1 
HETATM 6 C C21 KHL . . . C 3 14.059 9.822 10.636 1 36.89 ? C21 KHL 302 A 1 
HETATM 7 C C22 KHL . . . C 3 15.579 9.906 9.985 1 34.38 ? C22 KHL 302 A 1 
HETATM 8 C C24 KHL . . . C 3 17.272 8.319 9.128 1 34.69 ? C24 KHL 302 A 1 
HETATM 9 C C26 KHL . . . C 3 15.64 10.091 8.512 1 35.56 ? C26 KHL 302 A 1 
HETATM 10 C C02 KHL . . . C 3 12.674 7.108 12.009 1 37.5 ? C02 KHL 302 A 1 
HETATM 11 C C04 KHL . . . C 3 13.423 5.012 10.689 1 47.89 ? C04 KHL 302 A 1 
HETATM 12 C C05 KHL . . . C 3 14.163 4.036 11.656 1 46.16 ? C05 KHL 302 A 1 
HETATM 13 C C07 KHL . . . C 3 16.362 5.278 11.997 1 45.85 ? C07 KHL 302 A 1 
HETATM 14 C C11 KHL . . . C 3 18.854 7.184 14.352 1 41.69 ? C11 KHL 302 A 1 
HETATM 15 C C16 KHL . . . C 3 17.147 11.028 13.004 1 35.9 ? C16 KHL 302 A 1 
HETATM 16 C C18 KHL . . . C 3 14.53 10.361 13.235 1 33.21 ? C18 KHL 302 A 1 
HETATM 17 C C25 KHL . . . C 3 16.937 9.315 8.024 1 33.95 ? C25 KHL 302 A 1 
HETATM 18 C C30 KHL . . . C 3 16.259 6.438 7.726 1 33.22 ? C30 KHL 302 A 1 
HETATM 19 C C32 KHL . . . C 3 17.869 4.889 7.64 1 29.54 ? C32 KHL 302 A 1 
HETATM 20 C C33 KHL . . . C 3 18.372 5.98 8.42 1 29.38 ? C33 KHL 302 A 1 
HETATM 21 C C35 KHL . . . C 3 20.383 4.889 8.744 1 31.45 ? C35 KHL 302 A 1 
HETATM 22 C C37 KHL . . . C 3 18.751 3.742 7.44 1 28.81 ? C37 KHL 302 A 1 
HETATM 23 C C40 KHL . . . C 3 20.648 12.446 12.288 1 30.64 ? C40 KHL 302 A 1 
HETATM 24 C C41 KHL . . . C 3 21.035 11.266 12.988 1 30.13 ? C41 KHL 302 A 1 
HETATM 25 C C43 KHL . . . C 3 23.274 11.742 12.782 1 31.12 ? C43 KHL 302 A 1 
HETATM 26 C C45 KHL . . . C 3 21.753 13.325 11.806 1 27.81 ? C45 KHL 302 A 1 
HETATM 27 C C47 KHL . . . C 3 18.904 9.414 15.389 1 37.84 ? C47 KHL 302 A 1 
HETATM 28 C C48 KHL . . . C 3 18.817 7.937 15.679 1 35.69 ? C48 KHL 302 A 1 
HETATM 29 N N03 KHL . . . C 3 13.566 6.468 11.1 1 42.43 ? N03 KHL 302 A 1 
HETATM 30 N N06 KHL . . . C 3 15.137 4.8 12.512 1 45.21 ? N06 KHL 302 A 1 
HETATM 31 N N09 KHL . . . C 3 17.406 6.024 12.595 1 41.73 ? N09 KHL 302 A 1 
HETATM 32 N N14 KHL . . . C 3 19.791 10.598 13.34 1 32.27 ? N14 KHL 302 A 1 
HETATM 33 N N19 KHL . . . C 3 14.044 9.337 12.036 1 39.47 ? N19 KHL 302 A 1 
HETATM 34 N N29 KHL . . . C 3 17.328 6.98 8.468 1 33.49 ? N29 KHL 302 A 1 
HETATM 35 N N31 KHL . . . C 3 16.55 5.216 7.232 1 32.84 ? N31 KHL 302 A 1 
HETATM 36 N N34 KHL . . . C 3 19.633 5.994 8.981 1 29.45 ? N34 KHL 302 A 1 
HETATM 37 N N36 KHL . . . C 3 19.994 3.774 8.008 1 32.75 ? N36 KHL 302 A 1 
HETATM 38 N N38 KHL . . . C 3 18.322 2.609 6.672 1 32.06 ? N38 KHL 302 A 1 
HETATM 39 N N39 KHL . . . C 3 19.209 12.482 12.222 1 32.96 ? N39 KHL 302 A 1 
HETATM 40 N N42 KHL . . . C 3 22.346 10.892 13.252 1 27.17 ? N42 KHL 302 A 1 
HETATM 41 N N44 KHL . . . C 3 23.042 12.927 12.083 1 30.27 ? N44 KHL 302 A 1 
HETATM 42 N N46 KHL . . . C 3 21.511 14.521 11.093 1 30.58 ? N46 KHL 302 A 1 
HETATM 43 O O01 KHL . . . C 3 11.735 6.479 12.504 1 53.54 ? O01 KHL 302 A 1 
HETATM 44 O O08 KHL . . . C 3 16.492 4.94 10.839 1 47.49 ? O08 KHL 302 A 1 
HETATM 45 O O12 KHL . . . C 3 19.283 8.188 13.399 1 34.21 ? O12 KHL 302 A 1 
HETATM 46 O O23 KHL . . . C 3 16.249 8.532 10.101 1 35.37 ? O23 KHL 302 A 1 
HETATM 47 O O27 KHL . . . C 3 15.72 11.449 8.271 1 30.66 ? O27 KHL 302 A 1 
HETATM 48 O O28 KHL . . . C 3 18.048 10.126 7.9 1 31.41 ? O28 KHL 302 A 1 
HETATM 49 O O49 KHL . . . C 3 19.907 7.541 16.498 1 46.81 ? O49 KHL 302 A 1 
HETATM 50 O O50 KHL . . . C 3 19.458 10.081 16.477 1 39.98 ? O50 KHL 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           50 
#