data_821P # _model_server_result.job_id wyKc_rVEOLAbm22x7AwWIA _model_server_result.datetime_utc '2024-11-01 18:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 821p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":167}' # _entry.id 821P # _exptl.entry_id 821P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 821P _cell.length_a 40.2 _cell.length_b 40.2 _cell.length_c 160.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 821P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc3 C O2G GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc4 C O2B GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc5 B MG MG . A MG 168 1_555 D O HOH . A HOH 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc6 B MG MG . A MG 168 1_555 D O HOH . A HOH 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 821P _atom_sites.fract_transf_matrix[1][1] 0.024876 _atom_sites.fract_transf_matrix[1][2] 0.014362 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 168 168 MG MG . C 3 GNP A 1 167 167 GNP GTN . D 4 HOH A 1 169 169 HOH HOH . D 4 HOH A 2 170 170 HOH HOH . D 4 HOH A 3 171 171 HOH HOH . D 4 HOH A 4 172 172 HOH HOH . D 4 HOH A 5 173 173 HOH HOH . D 4 HOH A 6 174 174 HOH HOH . D 4 HOH A 7 175 175 HOH HOH . D 4 HOH A 8 176 176 HOH HOH . D 4 HOH A 9 177 177 HOH HOH . D 4 HOH A 10 178 178 HOH HOH . D 4 HOH A 11 179 179 HOH HOH . D 4 HOH A 12 180 180 HOH HOH . D 4 HOH A 13 181 181 HOH HOH . D 4 HOH A 14 184 184 HOH HOH . D 4 HOH A 15 185 185 HOH HOH . D 4 HOH A 16 186 186 HOH HOH . D 4 HOH A 17 187 187 HOH HOH . D 4 HOH A 18 193 193 HOH HOH . D 4 HOH A 19 195 195 HOH HOH . D 4 HOH A 20 196 196 HOH HOH . D 4 HOH A 21 198 198 HOH HOH . D 4 HOH A 22 201 201 HOH HOH . D 4 HOH A 23 202 202 HOH HOH . D 4 HOH A 24 204 204 HOH HOH . D 4 HOH A 25 205 205 HOH HOH . D 4 HOH A 26 210 210 HOH HOH . D 4 HOH A 27 213 213 HOH HOH . D 4 HOH A 28 214 214 HOH HOH . D 4 HOH A 29 215 215 HOH HOH . D 4 HOH A 30 217 217 HOH HOH . D 4 HOH A 31 219 219 HOH HOH . D 4 HOH A 32 220 220 HOH HOH . D 4 HOH A 33 222 222 HOH HOH . D 4 HOH A 34 228 228 HOH HOH . D 4 HOH A 35 230 230 HOH HOH . D 4 HOH A 36 231 231 HOH HOH . D 4 HOH A 37 232 232 HOH HOH . D 4 HOH A 38 233 233 HOH HOH . D 4 HOH A 39 235 235 HOH HOH . D 4 HOH A 40 236 236 HOH HOH . D 4 HOH A 41 237 237 HOH HOH . D 4 HOH A 42 238 238 HOH HOH . D 4 HOH A 43 241 241 HOH HOH . D 4 HOH A 44 246 246 HOH HOH . D 4 HOH A 45 247 247 HOH HOH . D 4 HOH A 46 248 248 HOH HOH . D 4 HOH A 47 252 252 HOH HOH . D 4 HOH A 48 253 253 HOH HOH . D 4 HOH A 49 256 256 HOH HOH . D 4 HOH A 50 257 257 HOH HOH . D 4 HOH A 51 258 258 HOH HOH . D 4 HOH A 52 259 259 HOH HOH . D 4 HOH A 53 262 262 HOH HOH . D 4 HOH A 54 263 263 HOH HOH . D 4 HOH A 55 264 264 HOH HOH . D 4 HOH A 56 265 265 HOH HOH . D 4 HOH A 57 266 266 HOH HOH . D 4 HOH A 58 267 267 HOH HOH . D 4 HOH A 59 268 268 HOH HOH . D 4 HOH A 60 273 273 HOH HOH . D 4 HOH A 61 276 276 HOH HOH . D 4 HOH A 62 277 277 HOH HOH . D 4 HOH A 63 281 281 HOH HOH . D 4 HOH A 64 282 282 HOH HOH . D 4 HOH A 65 284 284 HOH HOH . D 4 HOH A 66 289 289 HOH HOH . D 4 HOH A 67 290 290 HOH HOH . D 4 HOH A 68 291 291 HOH HOH . D 4 HOH A 69 292 292 HOH HOH . D 4 HOH A 70 298 298 HOH HOH . D 4 HOH A 71 300 300 HOH HOH . D 4 HOH A 72 305 305 HOH HOH . D 4 HOH A 73 309 309 HOH HOH . D 4 HOH A 74 313 313 HOH HOH . D 4 HOH A 75 316 316 HOH HOH . D 4 HOH A 76 319 319 HOH HOH . D 4 HOH A 77 320 320 HOH HOH . D 4 HOH A 78 325 325 HOH HOH . D 4 HOH A 79 335 335 HOH HOH . D 4 HOH A 80 337 337 HOH HOH . D 4 HOH A 81 338 338 HOH HOH . D 4 HOH A 82 343 343 HOH HOH . D 4 HOH A 83 348 348 HOH HOH . D 4 HOH A 84 350 350 HOH HOH . D 4 HOH A 85 354 354 HOH HOH . D 4 HOH A 86 358 358 HOH HOH . D 4 HOH A 87 366 366 HOH HOH . D 4 HOH A 88 367 367 HOH HOH . D 4 HOH A 89 378 378 HOH HOH . D 4 HOH A 90 381 381 HOH HOH . D 4 HOH A 91 383 383 HOH HOH . D 4 HOH A 92 385 385 HOH HOH . D 4 HOH A 93 389 389 HOH HOH . D 4 HOH A 94 391 391 HOH HOH . D 4 HOH A 95 394 394 HOH HOH . D 4 HOH A 96 395 395 HOH HOH . D 4 HOH A 97 397 397 HOH HOH . D 4 HOH A 98 398 398 HOH HOH . D 4 HOH A 99 406 406 HOH HOH . D 4 HOH A 100 409 409 HOH HOH . D 4 HOH A 101 410 410 HOH HOH . D 4 HOH A 102 411 411 HOH HOH . D 4 HOH A 103 413 413 HOH HOH . D 4 HOH A 104 414 414 HOH HOH . D 4 HOH A 105 416 416 HOH HOH . D 4 HOH A 106 417 417 HOH HOH . D 4 HOH A 107 418 418 HOH HOH . D 4 HOH A 108 420 420 HOH HOH . D 4 HOH A 109 423 423 HOH HOH . D 4 HOH A 110 424 424 HOH HOH . D 4 HOH A 111 425 425 HOH HOH . D 4 HOH A 112 426 426 HOH HOH . D 4 HOH A 113 430 430 HOH HOH . D 4 HOH A 114 432 432 HOH HOH . D 4 HOH A 115 434 434 HOH HOH . D 4 HOH A 116 438 438 HOH HOH . D 4 HOH A 117 439 439 HOH HOH . D 4 HOH A 118 447 447 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 5.081 32.053 21.902 1 11.92 ? PG GNP 167 A 1 HETATM 2 O O1G GNP . . . C 3 4.866 32.625 23.228 1 15.26 ? O1G GNP 167 A 1 HETATM 3 O O2G GNP . . . C 3 4.134 32.573 20.949 1 14.03 ? O2G GNP 167 A 1 HETATM 4 O O3G GNP . . . C 3 4.641 30.511 21.933 1 14.28 ? O3G GNP 167 A 1 HETATM 5 N N3B GNP . . . C 3 6.657 32.158 21.48 1 12.29 ? N3B GNP 167 A 1 HETATM 6 P PB GNP . . . C 3 7.281 31.808 19.994 1 12.22 ? PB GNP 167 A 1 HETATM 7 O O1B GNP . . . C 3 7.439 30.36 19.745 1 10.02 ? O1B GNP 167 A 1 HETATM 8 O O2B GNP . . . C 3 6.663 32.536 18.871 1 10.61 ? O2B GNP 167 A 1 HETATM 9 O O3A GNP . . . C 3 8.774 32.378 20.048 1 11.82 ? O3A GNP 167 A 1 HETATM 10 P PA GNP . . . C 3 9.212 33.902 19.551 1 12.64 ? PA GNP 167 A 1 HETATM 11 O O1A GNP . . . C 3 9.214 33.99 18.054 1 12.93 ? O1A GNP 167 A 1 HETATM 12 O O2A GNP . . . C 3 8.485 34.949 20.317 1 12.93 ? O2A GNP 167 A 1 HETATM 13 O O5' GNP . . . C 3 10.72 33.879 20.058 1 12.37 ? O5' GNP 167 A 1 HETATM 14 C C5' GNP . . . C 3 11.072 33.56 21.411 1 13.29 ? C5' GNP 167 A 1 HETATM 15 C C4' GNP . . . C 3 12.482 34.056 21.732 1 12.27 ? C4' GNP 167 A 1 HETATM 16 O O4' GNP . . . C 3 13.473 33.321 20.961 1 12.58 ? O4' GNP 167 A 1 HETATM 17 C C3' GNP . . . C 3 12.633 35.56 21.359 1 13.62 ? C3' GNP 167 A 1 HETATM 18 O O3' GNP . . . C 3 13.549 36.243 22.261 1 14.33 ? O3' GNP 167 A 1 HETATM 19 C C2' GNP . . . C 3 13.225 35.437 19.939 1 11.95 ? C2' GNP 167 A 1 HETATM 20 O O2' GNP . . . C 3 14.035 36.556 19.545 1 14.85 ? O2' GNP 167 A 1 HETATM 21 C C1' GNP . . . C 3 14.148 34.218 20.071 1 12.47 ? C1' GNP 167 A 1 HETATM 22 N N9 GNP . . . C 3 14.37 33.546 18.764 1 12.86 ? N9 GNP 167 A 1 HETATM 23 C C8 GNP . . . C 3 13.421 33.1 17.875 1 10.35 ? C8 GNP 167 A 1 HETATM 24 N N7 GNP . . . C 3 13.883 32.43 16.895 1 9.67 ? N7 GNP 167 A 1 HETATM 25 C C5 GNP . . . C 3 15.244 32.445 17.09 1 11.3 ? C5 GNP 167 A 1 HETATM 26 C C6 GNP . . . C 3 16.264 31.878 16.302 1 12.56 ? C6 GNP 167 A 1 HETATM 27 O O6 GNP . . . C 3 16.143 31.28 15.229 1 14.18 ? O6 GNP 167 A 1 HETATM 28 N N1 GNP . . . C 3 17.521 32.082 16.88 1 13.01 ? N1 GNP 167 A 1 HETATM 29 C C2 GNP . . . C 3 17.766 32.783 18.039 1 13.79 ? C2 GNP 167 A 1 HETATM 30 N N2 GNP . . . C 3 19.042 32.898 18.421 1 16.02 ? N2 GNP 167 A 1 HETATM 31 N N3 GNP . . . C 3 16.789 33.34 18.762 1 14.05 ? N3 GNP 167 A 1 HETATM 32 C C4 GNP . . . C 3 15.564 33.132 18.231 1 11.95 ? C4 GNP 167 A 1 HETATM 33 H HNB3 GNP . . . C 3 6.867 33.138 21.608 1 15 ? HNB3 GNP 167 A 1 HETATM 34 H "H5'2" GNP . . . C 3 10.364 34.076 22.06 1 15 ? "H5'2" GNP 167 A 1 HETATM 35 H "H5'1" GNP . . . C 3 10.998 32.491 21.609 1 15 ? "H5'1" GNP 167 A 1 HETATM 36 H H4' GNP . . . C 3 12.678 33.931 22.797 1 15 ? H4' GNP 167 A 1 HETATM 37 H H3' GNP . . . C 3 11.668 36.07 21.379 1 15 ? H3' GNP 167 A 1 HETATM 38 H HO3' GNP . . . C 3 13.217 36.132 23.154 1 15 ? HO3' GNP 167 A 1 HETATM 39 H H2' GNP . . . C 3 12.404 35.226 19.249 1 15 ? H2' GNP 167 A 1 HETATM 40 H HO2' GNP . . . C 3 13.443 37.28 19.324 1 15 ? HO2' GNP 167 A 1 HETATM 41 H H1' GNP . . . C 3 15.097 34.549 20.485 1 15 ? H1' GNP 167 A 1 HETATM 42 H H8 GNP . . . C 3 12.359 33.31 17.999 1 15 ? H8 GNP 167 A 1 HETATM 43 H HN1 GNP . . . C 3 18.299 31.648 16.42 1 15 ? HN1 GNP 167 A 1 HETATM 44 H HN21 GNP . . . C 3 19.27 33.405 19.263 1 15 ? HN21 GNP 167 A 1 HETATM 45 H HN22 GNP . . . C 3 19.786 32.481 17.877 1 15 ? HN22 GNP 167 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #