data_8A0E # _model_server_result.job_id LkfHPdukRYc_W_uReIF2rA _model_server_result.datetime_utc '2024-10-12 04:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":402}' # _entry.id 8A0E # _exptl.entry_id 8A0E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A0E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 24 E CYS 22 1_555 E SG CYS 75 E CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 C C TYR 178 C TYR 176 1_555 C N CSS 179 C CSS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C CSS 179 C CSS 177 1_555 C N LYS 180 C LYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 D C TYR 178 D TYR 176 1_555 D N CSS 179 D CSS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 D C CSS 179 D CSS 177 1_555 D N LYS 180 D LYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8A0E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAD A 1 401 401 NAD NAD . G 5 SPD A 1 402 501 SPD SPD . H 4 NAD B 1 401 401 NAD NAD . I 5 SPD B 1 402 402 SPD SPD . J 4 NAD C 1 401 401 NAD NAD . K 5 SPD D 1 401 402 SPD SPD . L 4 NAD D 1 402 401 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 4 105.973 106.478 127.461 0.88 39.71 ? PA NAD 402 D 1 HETATM 2 O O1A NAD . . . L 4 105.249 105.43 126.684 0.88 39.71 ? O1A NAD 402 D 1 HETATM 3 O O2A NAD . . . L 4 105.351 107.829 127.582 0.88 39.71 ? O2A NAD 402 D 1 HETATM 4 O O5B NAD . . . L 4 107.457 106.632 126.872 0.88 39.71 ? O5B NAD 402 D 1 HETATM 5 C C5B NAD . . . L 4 107.588 107.15 125.525 0.88 39.71 ? C5B NAD 402 D 1 HETATM 6 C C4B NAD . . . L 4 108.991 106.92 125.024 0.88 39.71 ? C4B NAD 402 D 1 HETATM 7 O O4B NAD . . . L 4 109.227 105.489 124.975 0.88 39.71 ? O4B NAD 402 D 1 HETATM 8 C C3B NAD . . . L 4 109.251 107.38 123.586 0.88 39.71 ? C3B NAD 402 D 1 HETATM 9 O O3B NAD . . . L 4 110.646 107.449 123.329 0.88 39.71 ? O3B NAD 402 D 1 HETATM 10 C C2B NAD . . . L 4 108.646 106.204 122.82 0.88 39.71 ? C2B NAD 402 D 1 HETATM 11 O O2B NAD . . . L 4 109.002 106.151 121.456 0.88 39.71 ? O2B NAD 402 D 1 HETATM 12 C C1B NAD . . . L 4 109.203 105.042 123.636 0.88 39.71 ? C1B NAD 402 D 1 HETATM 13 N N9A NAD . . . L 4 108.385 103.837 123.572 0.88 39.71 ? N9A NAD 402 D 1 HETATM 14 C C8A NAD . . . L 4 107.284 103.555 124.34 0.88 39.71 ? C8A NAD 402 D 1 HETATM 15 N N7A NAD . . . L 4 106.742 102.395 124.066 0.88 39.71 ? N7A NAD 402 D 1 HETATM 16 C C5A NAD . . . L 4 107.536 101.875 123.055 0.88 39.71 ? C5A NAD 402 D 1 HETATM 17 C C6A NAD . . . L 4 107.481 100.666 122.336 0.88 39.71 ? C6A NAD 402 D 1 HETATM 18 N N6A NAD . . . L 4 106.557 99.729 122.533 0.88 39.71 ? N6A NAD 402 D 1 HETATM 19 N N1A NAD . . . L 4 108.427 100.458 121.391 0.88 39.71 ? N1A NAD 402 D 1 HETATM 20 C C2A NAD . . . L 4 109.354 101.404 121.197 0.88 39.71 ? C2A NAD 402 D 1 HETATM 21 N N3A NAD . . . L 4 109.503 102.574 121.81 0.88 39.71 ? N3A NAD 402 D 1 HETATM 22 C C4A NAD . . . L 4 108.553 102.755 122.741 0.88 39.71 ? C4A NAD 402 D 1 HETATM 23 O O3 NAD . . . L 4 106.27 105.91 128.93 0.88 39.71 ? O3 NAD 402 D 1 HETATM 24 P PN NAD . . . L 4 106.55 106.653 130.322 0.88 39.71 ? PN NAD 402 D 1 HETATM 25 O O1N NAD . . . L 4 107.67 107.622 130.139 0.88 39.71 ? O1N NAD 402 D 1 HETATM 26 O O2N NAD . . . L 4 106.676 105.612 131.383 0.88 39.71 ? O2N NAD 402 D 1 HETATM 27 O O5D NAD . . . L 4 105.167 107.449 130.502 0.88 39.71 ? O5D NAD 402 D 1 HETATM 28 C C5D NAD . . . L 4 105.08 108.595 131.389 0.88 39.71 ? C5D NAD 402 D 1 HETATM 29 C C4D NAD . . . L 4 104.477 108.2 132.716 0.88 39.71 ? C4D NAD 402 D 1 HETATM 30 O O4D NAD . . . L 4 103.235 107.494 132.527 0.88 39.71 ? O4D NAD 402 D 1 HETATM 31 C C3D NAD . . . L 4 105.306 107.299 133.646 0.88 39.71 ? C3D NAD 402 D 1 HETATM 32 O O3D NAD . . . L 4 105.85 108.065 134.713 0.88 39.71 ? O3D NAD 402 D 1 HETATM 33 C C2D NAD . . . L 4 104.268 106.267 134.111 0.88 39.71 ? C2D NAD 402 D 1 HETATM 34 O O2D NAD . . . L 4 104.375 105.895 135.477 0.88 39.71 ? O2D NAD 402 D 1 HETATM 35 C C1D NAD . . . L 4 102.92 106.897 133.769 0.88 39.71 ? C1D NAD 402 D 1 HETATM 36 N N1N NAD . . . L 4 101.847 105.881 133.569 0.88 39.71 ? N1N NAD 402 D 1 HETATM 37 C C2N NAD . . . L 4 101.757 105.184 132.39 0.88 39.71 ? C2N NAD 402 D 1 HETATM 38 C C3N NAD . . . L 4 100.808 104.178 132.247 0.88 39.71 ? C3N NAD 402 D 1 HETATM 39 C C7N NAD . . . L 4 100.776 103.374 130.972 0.88 39.71 ? C7N NAD 402 D 1 HETATM 40 O O7N NAD . . . L 4 101.523 103.679 130.045 0.88 39.71 ? O7N NAD 402 D 1 HETATM 41 N N7N NAD . . . L 4 99.939 102.348 130.913 0.88 39.71 ? N7N NAD 402 D 1 HETATM 42 C C4N NAD . . . L 4 99.908 103.941 133.279 0.88 39.71 ? C4N NAD 402 D 1 HETATM 43 C C5N NAD . . . L 4 99.978 104.687 134.431 0.88 39.71 ? C5N NAD 402 D 1 HETATM 44 C C6N NAD . . . L 4 100.957 105.644 134.559 0.88 39.71 ? C6N NAD 402 D 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #