data_8A0S # _model_server_result.job_id 70_fnr9Vmn-dHyUNHyxSMg _model_server_result.datetime_utc '2025-09-16 15:18:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8A0S # _exptl.entry_id 8A0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.72 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-chlorophenyl)methylsulfanyl]-5~{H}-pyrimidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A0S _cell.length_a 36.045 _cell.length_b 60.482 _cell.length_c 66.021 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C11 H9 Cl N2 O S' _chem_comp.formula_weight 252.72 _chem_comp.id KOX _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-chlorophenyl)methylsulfanyl]-5~{H}-pyrimidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 KOX doub 173 n y C11 C12 KOX sing 174 n y C10 C09 KOX sing 175 n y C14 C15 KOX sing 176 n n C14 C04 KOX sing 177 n n S05 C04 KOX sing 178 n n S05 C06 KOX sing 179 n n C15 N16 KOX doub 180 n n CL13 C12 KOX sing 181 n n C12 C07 KOX doub 182 n y C09 C08 KOX doub 183 n y C04 N03 KOX doub 184 n n C07 C08 KOX sing 185 n y C07 C06 KOX sing 186 n n N16 C02 KOX sing 187 n n N03 C02 KOX sing 188 n n C02 O01 KOX doub 189 n n C10 H1 KOX sing 190 n n C15 H2 KOX sing 191 n n C06 H3 KOX sing 192 n n C06 H4 KOX sing 193 n n C08 H5 KOX sing 194 n n C09 H6 KOX sing 195 n n C11 H7 KOX sing 196 n n C14 H8 KOX sing 197 n n C14 H9 KOX sing 198 n n # _atom_sites.entry_id 8A0S _atom_sites.fract_transf_matrix[1][1] 0.027743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KOX A 1 201 201 KOX LIG . C 2 KOX A 1 202 202 KOX LIG . D 3 SO4 A 1 203 1 SO4 SO4 . E 4 HOH A 1 301 110 HOH HOH . E 4 HOH A 2 302 100 HOH HOH . E 4 HOH A 3 303 62 HOH HOH . E 4 HOH A 4 304 163 HOH HOH . E 4 HOH A 5 305 34 HOH HOH . E 4 HOH A 6 306 160 HOH HOH . E 4 HOH A 7 307 64 HOH HOH . E 4 HOH A 8 308 2 HOH HOH . E 4 HOH A 9 309 98 HOH HOH . E 4 HOH A 10 310 88 HOH HOH . E 4 HOH A 11 311 13 HOH HOH . E 4 HOH A 12 312 133 HOH HOH . E 4 HOH A 13 313 11 HOH HOH . E 4 HOH A 14 314 159 HOH HOH . E 4 HOH A 15 315 23 HOH HOH . E 4 HOH A 16 316 56 HOH HOH . E 4 HOH A 17 317 101 HOH HOH . E 4 HOH A 18 318 134 HOH HOH . E 4 HOH A 19 319 15 HOH HOH . E 4 HOH A 20 320 12 HOH HOH . E 4 HOH A 21 321 1 HOH HOH . E 4 HOH A 22 322 137 HOH HOH . E 4 HOH A 23 323 87 HOH HOH . E 4 HOH A 24 324 82 HOH HOH . E 4 HOH A 25 325 149 HOH HOH . E 4 HOH A 26 326 50 HOH HOH . E 4 HOH A 27 327 36 HOH HOH . E 4 HOH A 28 328 69 HOH HOH . E 4 HOH A 29 329 57 HOH HOH . E 4 HOH A 30 330 95 HOH HOH . E 4 HOH A 31 331 111 HOH HOH . E 4 HOH A 32 332 92 HOH HOH . E 4 HOH A 33 333 80 HOH HOH . E 4 HOH A 34 334 19 HOH HOH . E 4 HOH A 35 335 75 HOH HOH . E 4 HOH A 36 336 7 HOH HOH . E 4 HOH A 37 337 42 HOH HOH . E 4 HOH A 38 338 155 HOH HOH . E 4 HOH A 39 339 72 HOH HOH . E 4 HOH A 40 340 6 HOH HOH . E 4 HOH A 41 341 128 HOH HOH . E 4 HOH A 42 342 125 HOH HOH . E 4 HOH A 43 343 29 HOH HOH . E 4 HOH A 44 344 61 HOH HOH . E 4 HOH A 45 345 146 HOH HOH . E 4 HOH A 46 346 22 HOH HOH . E 4 HOH A 47 347 30 HOH HOH . E 4 HOH A 48 348 112 HOH HOH . E 4 HOH A 49 349 130 HOH HOH . E 4 HOH A 50 350 158 HOH HOH . E 4 HOH A 51 351 52 HOH HOH . E 4 HOH A 52 352 93 HOH HOH . E 4 HOH A 53 353 4 HOH HOH . E 4 HOH A 54 354 152 HOH HOH . E 4 HOH A 55 355 139 HOH HOH . E 4 HOH A 56 356 40 HOH HOH . E 4 HOH A 57 357 51 HOH HOH . E 4 HOH A 58 358 37 HOH HOH . E 4 HOH A 59 359 71 HOH HOH . E 4 HOH A 60 360 63 HOH HOH . E 4 HOH A 61 361 85 HOH HOH . E 4 HOH A 62 362 157 HOH HOH . E 4 HOH A 63 363 43 HOH HOH . E 4 HOH A 64 364 5 HOH HOH . E 4 HOH A 65 365 8 HOH HOH . E 4 HOH A 66 366 3 HOH HOH . E 4 HOH A 67 367 14 HOH HOH . E 4 HOH A 68 368 20 HOH HOH . E 4 HOH A 69 369 67 HOH HOH . E 4 HOH A 70 370 9 HOH HOH . E 4 HOH A 71 371 136 HOH HOH . E 4 HOH A 72 372 132 HOH HOH . E 4 HOH A 73 373 38 HOH HOH . E 4 HOH A 74 374 44 HOH HOH . E 4 HOH A 75 375 105 HOH HOH . E 4 HOH A 76 376 68 HOH HOH . E 4 HOH A 77 377 55 HOH HOH . E 4 HOH A 78 378 46 HOH HOH . E 4 HOH A 79 379 32 HOH HOH . E 4 HOH A 80 380 77 HOH HOH . E 4 HOH A 81 381 33 HOH HOH . E 4 HOH A 82 382 66 HOH HOH . E 4 HOH A 83 383 45 HOH HOH . E 4 HOH A 84 384 129 HOH HOH . E 4 HOH A 85 385 16 HOH HOH . E 4 HOH A 86 386 53 HOH HOH . E 4 HOH A 87 387 47 HOH HOH . E 4 HOH A 88 388 60 HOH HOH . E 4 HOH A 89 389 140 HOH HOH . E 4 HOH A 90 390 21 HOH HOH . E 4 HOH A 91 391 151 HOH HOH . E 4 HOH A 92 392 18 HOH HOH . E 4 HOH A 93 393 126 HOH HOH . E 4 HOH A 94 394 65 HOH HOH . E 4 HOH A 95 395 138 HOH HOH . E 4 HOH A 96 396 39 HOH HOH . E 4 HOH A 97 397 135 HOH HOH . E 4 HOH A 98 398 26 HOH HOH . E 4 HOH A 99 399 10 HOH HOH . E 4 HOH A 100 400 59 HOH HOH . E 4 HOH A 101 401 115 HOH HOH . E 4 HOH A 102 402 31 HOH HOH . E 4 HOH A 103 403 86 HOH HOH . E 4 HOH A 104 404 58 HOH HOH . E 4 HOH A 105 405 83 HOH HOH . E 4 HOH A 106 406 154 HOH HOH . E 4 HOH A 107 407 25 HOH HOH . E 4 HOH A 108 408 99 HOH HOH . E 4 HOH A 109 409 81 HOH HOH . E 4 HOH A 110 410 117 HOH HOH . E 4 HOH A 111 411 41 HOH HOH . E 4 HOH A 112 412 120 HOH HOH . E 4 HOH A 113 413 84 HOH HOH . E 4 HOH A 114 414 114 HOH HOH . E 4 HOH A 115 415 153 HOH HOH . E 4 HOH A 116 416 108 HOH HOH . E 4 HOH A 117 417 116 HOH HOH . E 4 HOH A 118 418 123 HOH HOH . E 4 HOH A 119 419 104 HOH HOH . E 4 HOH A 120 420 24 HOH HOH . E 4 HOH A 121 421 142 HOH HOH . E 4 HOH A 122 422 89 HOH HOH . E 4 HOH A 123 423 48 HOH HOH . E 4 HOH A 124 424 119 HOH HOH . E 4 HOH A 125 425 76 HOH HOH . E 4 HOH A 126 426 156 HOH HOH . E 4 HOH A 127 427 145 HOH HOH . E 4 HOH A 128 428 124 HOH HOH . E 4 HOH A 129 429 113 HOH HOH . E 4 HOH A 130 430 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 KOX . B . C 2 -13.044 -10.86 10.295 0.5 18.32 ? C10 KOX 202 A 1 HETATM 2 C C15 KOX . B . C 2 -15.335 -18.547 10.711 0.5 15.88 ? C15 KOX 202 A 1 HETATM 3 O O01 KOX . B . C 2 -12.829 -17.822 12.926 0.5 16.67 ? O01 KOX 202 A 1 HETATM 4 C C02 KOX . B . C 2 -13.801 -17.621 12.205 0.5 16.42 ? C02 KOX 202 A 1 HETATM 5 N N03 KOX . B . C 2 -14.429 -16.446 12.115 0.5 18.21 ? N03 KOX 202 A 1 HETATM 6 C C04 KOX . B . C 2 -15.468 -16.318 11.33 0.5 15.67 ? C04 KOX 202 A 1 HETATM 7 S S05 KOX . B . C 2 -16.323 -14.731 11.215 0.5 18.55 ? S05 KOX 202 A 1 HETATM 8 C C06 KOX . B . C 2 -15.554 -13.59 12.358 0.5 19.95 ? C06 KOX 202 A 1 HETATM 9 C C07 KOX . B . C 2 -14.645 -12.645 11.612 0.5 18.61 ? C07 KOX 202 A 1 HETATM 10 C C08 KOX . B . C 2 -13.313 -12.938 11.455 0.5 17.25 ? C08 KOX 202 A 1 HETATM 11 C C09 KOX . B . C 2 -12.499 -12.051 10.751 0.5 17.59 ? C09 KOX 202 A 1 HETATM 12 C C11 KOX . B . C 2 -14.362 -10.569 10.461 0.5 19.12 ? C11 KOX 202 A 1 HETATM 13 C C12 KOX . B . C 2 -15.168 -11.466 11.131 0.5 18.19 ? C12 KOX 202 A 1 HETATM 14 CL CL13 KOX . B . C 2 -16.88 -11.083 11.328 0.5 19.47 ? CL13 KOX 202 A 1 HETATM 15 C C14 KOX . B . C 2 -15.962 -17.364 10.615 0.5 16.48 ? C14 KOX 202 A 1 HETATM 16 N N16 KOX . B . C 2 -14.28 -18.627 11.501 0.5 15.8 ? N16 KOX 202 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #