data_8A1B # _model_server_result.job_id dmj7PQ8LBqZ0Fa37UQhGxg _model_server_result.datetime_utc '2024-10-16 16:24:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8A1B # _exptl.entry_id 8A1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A1B _cell.length_a 40.166 _cell.length_b 80.628 _cell.length_c 90.575 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 149 A HIS 149 1_555 F MN MN . A MN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 A NE2 HIS 160 A HIS 160 1_555 F MN MN . A MN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 A NE2 HIS 162 A HIS 162 1_555 F MN MN . A MN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 F MN MN . A MN 405 1_555 G O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 F MN MN . A MN 405 1_555 G O HOH . A HOH 645 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc6 F MN MN . A MN 405 1_555 G O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 8A1B _atom_sites.fract_transf_matrix[1][1] 0.024897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011041 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 402 GOL GOL . D 2 GOL A 1 403 403 GOL GOL . E 3 CL A 1 404 1 CL CL . F 4 MN A 1 405 1 MN MN . G 5 HOH A 1 501 114 HOH HOH . G 5 HOH A 2 502 30 HOH HOH . G 5 HOH A 3 503 142 HOH HOH . G 5 HOH A 4 504 158 HOH HOH . G 5 HOH A 5 505 130 HOH HOH . G 5 HOH A 6 506 151 HOH HOH . G 5 HOH A 7 507 191 HOH HOH . G 5 HOH A 8 508 173 HOH HOH . G 5 HOH A 9 509 81 HOH HOH . G 5 HOH A 10 510 58 HOH HOH . G 5 HOH A 11 511 28 HOH HOH . G 5 HOH A 12 512 175 HOH HOH . G 5 HOH A 13 513 82 HOH HOH . G 5 HOH A 14 514 80 HOH HOH . G 5 HOH A 15 515 119 HOH HOH . G 5 HOH A 16 516 12 HOH HOH . G 5 HOH A 17 517 178 HOH HOH . G 5 HOH A 18 518 152 HOH HOH . G 5 HOH A 19 519 25 HOH HOH . G 5 HOH A 20 520 135 HOH HOH . G 5 HOH A 21 521 2 HOH HOH . G 5 HOH A 22 522 141 HOH HOH . G 5 HOH A 23 523 116 HOH HOH . G 5 HOH A 24 524 94 HOH HOH . G 5 HOH A 25 525 38 HOH HOH . G 5 HOH A 26 526 18 HOH HOH . G 5 HOH A 27 527 160 HOH HOH . G 5 HOH A 28 528 90 HOH HOH . G 5 HOH A 29 529 66 HOH HOH . G 5 HOH A 30 530 89 HOH HOH . G 5 HOH A 31 531 145 HOH HOH . G 5 HOH A 32 532 14 HOH HOH . G 5 HOH A 33 533 165 HOH HOH . G 5 HOH A 34 534 106 HOH HOH . G 5 HOH A 35 535 27 HOH HOH . G 5 HOH A 36 536 35 HOH HOH . G 5 HOH A 37 537 5 HOH HOH . G 5 HOH A 38 538 39 HOH HOH . G 5 HOH A 39 539 85 HOH HOH . G 5 HOH A 40 540 20 HOH HOH . G 5 HOH A 41 541 7 HOH HOH . G 5 HOH A 42 542 144 HOH HOH . G 5 HOH A 43 543 73 HOH HOH . G 5 HOH A 44 544 23 HOH HOH . G 5 HOH A 45 545 53 HOH HOH . G 5 HOH A 46 546 99 HOH HOH . G 5 HOH A 47 547 8 HOH HOH . G 5 HOH A 48 548 91 HOH HOH . G 5 HOH A 49 549 76 HOH HOH . G 5 HOH A 50 550 42 HOH HOH . G 5 HOH A 51 551 21 HOH HOH . G 5 HOH A 52 552 109 HOH HOH . G 5 HOH A 53 553 61 HOH HOH . G 5 HOH A 54 554 112 HOH HOH . G 5 HOH A 55 555 17 HOH HOH . G 5 HOH A 56 556 36 HOH HOH . G 5 HOH A 57 557 3 HOH HOH . G 5 HOH A 58 558 13 HOH HOH . G 5 HOH A 59 559 168 HOH HOH . G 5 HOH A 60 560 49 HOH HOH . G 5 HOH A 61 561 164 HOH HOH . G 5 HOH A 62 562 4 HOH HOH . G 5 HOH A 63 563 118 HOH HOH . G 5 HOH A 64 564 71 HOH HOH . G 5 HOH A 65 565 1 HOH HOH . G 5 HOH A 66 566 44 HOH HOH . G 5 HOH A 67 567 51 HOH HOH . G 5 HOH A 68 568 11 HOH HOH . G 5 HOH A 69 569 45 HOH HOH . G 5 HOH A 70 570 26 HOH HOH . G 5 HOH A 71 571 132 HOH HOH . G 5 HOH A 72 572 169 HOH HOH . G 5 HOH A 73 573 19 HOH HOH . G 5 HOH A 74 574 41 HOH HOH . G 5 HOH A 75 575 56 HOH HOH . G 5 HOH A 76 576 115 HOH HOH . G 5 HOH A 77 577 65 HOH HOH . G 5 HOH A 78 578 6 HOH HOH . G 5 HOH A 79 579 86 HOH HOH . G 5 HOH A 80 580 37 HOH HOH . G 5 HOH A 81 581 68 HOH HOH . G 5 HOH A 82 582 46 HOH HOH . G 5 HOH A 83 583 22 HOH HOH . G 5 HOH A 84 584 111 HOH HOH . G 5 HOH A 85 585 34 HOH HOH . G 5 HOH A 86 586 149 HOH HOH . G 5 HOH A 87 587 117 HOH HOH . G 5 HOH A 88 588 122 HOH HOH . G 5 HOH A 89 589 10 HOH HOH . G 5 HOH A 90 590 77 HOH HOH . G 5 HOH A 91 591 139 HOH HOH . G 5 HOH A 92 592 126 HOH HOH . G 5 HOH A 93 593 146 HOH HOH . G 5 HOH A 94 594 107 HOH HOH . G 5 HOH A 95 595 96 HOH HOH . G 5 HOH A 96 596 31 HOH HOH . G 5 HOH A 97 597 133 HOH HOH . G 5 HOH A 98 598 43 HOH HOH . G 5 HOH A 99 599 9 HOH HOH . G 5 HOH A 100 600 50 HOH HOH . G 5 HOH A 101 601 16 HOH HOH . G 5 HOH A 102 602 121 HOH HOH . G 5 HOH A 103 603 62 HOH HOH . G 5 HOH A 104 604 52 HOH HOH . G 5 HOH A 105 605 70 HOH HOH . G 5 HOH A 106 606 75 HOH HOH . G 5 HOH A 107 607 127 HOH HOH . G 5 HOH A 108 608 47 HOH HOH . G 5 HOH A 109 609 78 HOH HOH . G 5 HOH A 110 610 155 HOH HOH . G 5 HOH A 111 611 48 HOH HOH . G 5 HOH A 112 612 63 HOH HOH . G 5 HOH A 113 613 97 HOH HOH . G 5 HOH A 114 614 33 HOH HOH . G 5 HOH A 115 615 32 HOH HOH . G 5 HOH A 116 616 40 HOH HOH . G 5 HOH A 117 617 187 HOH HOH . G 5 HOH A 118 618 92 HOH HOH . G 5 HOH A 119 619 88 HOH HOH . G 5 HOH A 120 620 55 HOH HOH . G 5 HOH A 121 621 143 HOH HOH . G 5 HOH A 122 622 198 HOH HOH . G 5 HOH A 123 623 67 HOH HOH . G 5 HOH A 124 624 69 HOH HOH . G 5 HOH A 125 625 74 HOH HOH . G 5 HOH A 126 626 108 HOH HOH . G 5 HOH A 127 627 64 HOH HOH . G 5 HOH A 128 628 174 HOH HOH . G 5 HOH A 129 629 93 HOH HOH . G 5 HOH A 130 630 98 HOH HOH . G 5 HOH A 131 631 102 HOH HOH . G 5 HOH A 132 632 54 HOH HOH . G 5 HOH A 133 633 120 HOH HOH . G 5 HOH A 134 634 180 HOH HOH . G 5 HOH A 135 635 104 HOH HOH . G 5 HOH A 136 636 84 HOH HOH . G 5 HOH A 137 637 79 HOH HOH . G 5 HOH A 138 638 105 HOH HOH . G 5 HOH A 139 639 194 HOH HOH . G 5 HOH A 140 640 15 HOH HOH . G 5 HOH A 141 641 72 HOH HOH . G 5 HOH A 142 642 140 HOH HOH . G 5 HOH A 143 643 161 HOH HOH . G 5 HOH A 144 644 59 HOH HOH . G 5 HOH A 145 645 138 HOH HOH . G 5 HOH A 146 646 172 HOH HOH . G 5 HOH A 147 647 24 HOH HOH . G 5 HOH A 148 648 60 HOH HOH . G 5 HOH A 149 649 156 HOH HOH . G 5 HOH A 150 650 123 HOH HOH . G 5 HOH A 151 651 57 HOH HOH . G 5 HOH A 152 652 128 HOH HOH . G 5 HOH A 153 653 197 HOH HOH . G 5 HOH A 154 654 159 HOH HOH . G 5 HOH A 155 655 163 HOH HOH . G 5 HOH A 156 656 162 HOH HOH . G 5 HOH A 157 657 171 HOH HOH . G 5 HOH A 158 658 200 HOH HOH . G 5 HOH A 159 659 176 HOH HOH . G 5 HOH A 160 660 148 HOH HOH . G 5 HOH A 161 661 101 HOH HOH . G 5 HOH A 162 662 166 HOH HOH . G 5 HOH A 163 663 170 HOH HOH . G 5 HOH A 164 664 190 HOH HOH . G 5 HOH A 165 665 113 HOH HOH . G 5 HOH A 166 666 110 HOH HOH . G 5 HOH A 167 667 95 HOH HOH . G 5 HOH A 168 668 186 HOH HOH . G 5 HOH A 169 669 29 HOH HOH . G 5 HOH A 170 670 182 HOH HOH . G 5 HOH A 171 671 153 HOH HOH . G 5 HOH A 172 672 185 HOH HOH . G 5 HOH A 173 673 103 HOH HOH . G 5 HOH A 174 674 125 HOH HOH . G 5 HOH A 175 675 184 HOH HOH . G 5 HOH A 176 676 129 HOH HOH . G 5 HOH A 177 677 199 HOH HOH . G 5 HOH A 178 678 177 HOH HOH . G 5 HOH A 179 679 193 HOH HOH . G 5 HOH A 180 680 87 HOH HOH . G 5 HOH A 181 681 196 HOH HOH . G 5 HOH A 182 682 192 HOH HOH . G 5 HOH A 183 683 150 HOH HOH . G 5 HOH A 184 684 154 HOH HOH . G 5 HOH A 185 685 136 HOH HOH . G 5 HOH A 186 686 202 HOH HOH . G 5 HOH A 187 687 188 HOH HOH . G 5 HOH A 188 688 100 HOH HOH . G 5 HOH A 189 689 195 HOH HOH . G 5 HOH A 190 690 131 HOH HOH . G 5 HOH A 191 691 203 HOH HOH . G 5 HOH A 192 692 83 HOH HOH . G 5 HOH A 193 693 134 HOH HOH . G 5 HOH A 194 694 137 HOH HOH . G 5 HOH A 195 695 157 HOH HOH . G 5 HOH A 196 696 147 HOH HOH . G 5 HOH A 197 697 167 HOH HOH . G 5 HOH A 198 698 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -5.698 8.484 28.882 1 49.76 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 2 -5.652 7.072 28.926 1 53.43 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 2 -7.086 8.878 28.342 1 56.51 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 2 -8.103 8.154 28.933 1 66.85 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 2 -7.195 10.413 28.642 1 51.02 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 2 -8.54 10.779 28.434 1 60.66 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . D 2 -5.012 8.861 28.308 1 59.75 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . D 2 -5.566 8.888 29.754 1 59.75 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . D 2 -6.462 6.806 28.901 1 64.16 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . D 2 -7.154 8.694 27.392 1 67.85 ? H2 GOL 403 A 1 HETATM 11 H H31 GOL . . . D 2 -6.574 10.889 28.069 1 61.26 ? H31 GOL 403 A 1 HETATM 12 H H32 GOL . . . D 2 -6.887 10.578 29.547 1 61.26 ? H32 GOL 403 A 1 HETATM 13 H HO3 GOL . . . D 2 -8.99 10.051 28.418 1 72.83 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #