data_8A1Q
#
_model_server_result.job_id            r4Jeh85fINITBGhDkeKcvw 
_model_server_result.datetime_utc      '2024-10-25 20:23:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a1q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    8A1Q 
#
_exptl.entry_id    8A1Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.38 
_cell.angle_gamma         90 
_cell.entry_id            8A1Q 
_cell.length_a            62.262 
_cell.length_b            69.258 
_cell.length_c            64.106 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A1Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 O MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 O MG MG . B MG 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc3 O MG MG . B MG 309 1_555 Y O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc4 O MG MG . B MG 309 1_555 Y O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc5 O MG MG . B MG 309 1_555 Y O HOH . B HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 O MG MG . B MG 309 1_555 Y O HOH . B HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 W MG MG . D MG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 W MG MG . D MG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc9 W MG MG . D MG 1306 1_555 AA O HOH . D HOH 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc10 W MG MG . D MG 1306 1_555 AA O HOH . D HOH 1418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc11 W MG MG . D MG 1306 1_555 AA O HOH . D HOH 1421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc12 W MG MG . D MG 1306 1_555 AA O HOH . D HOH 1445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8A1Q 
_atom_sites.fract_transf_matrix[1][1]    0.016061 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003525 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014439 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO A 1 501 302 EDO EDO . 
F 2 EDO A 1 502 1501 EDO EDO . 
G 2 EDO B 1 301 301 EDO EDO . 
H 2 EDO B 1 302 401 EDO EDO . 
I 2 EDO B 1 303 701 EDO EDO . 
J 2 EDO B 1 304 802 EDO EDO . 
K 2 EDO B 1 305 1401 EDO EDO . 
L 2 EDO B 1 306 301 EDO EDO . 
M 2 EDO B 1 307 1101 EDO EDO . 
N 3 WBV B 1 308 1401 WBV LIG . 
O 4 MG B 1 309 1 MG MG . 
P 2 EDO C 1 501 401 EDO EDO . 
Q 2 EDO C 1 502 1501 EDO EDO . 
R 3 WBV D 1 1301 1301 WBV LIG . 
S 2 EDO D 1 1302 801 EDO EDO . 
T 2 EDO D 1 1303 901 EDO EDO . 
U 2 EDO D 1 1304 1002 EDO EDO . 
V 2 EDO D 1 1305 1402 EDO EDO . 
W 4 MG D 1 1306 2 MG MG . 
X 5 HOH A 1 601 108 HOH HOH . 
X 5 HOH A 2 602 109 HOH HOH . 
X 5 HOH A 3 603 47 HOH HOH . 
X 5 HOH A 4 604 186 HOH HOH . 
X 5 HOH A 5 605 104 HOH HOH . 
X 5 HOH A 6 606 200 HOH HOH . 
X 5 HOH A 7 607 88 HOH HOH . 
X 5 HOH A 8 608 181 HOH HOH . 
Y 5 HOH B 1 401 73 HOH HOH . 
Y 5 HOH B 2 402 7 HOH HOH . 
Y 5 HOH B 3 403 20 HOH HOH . 
Y 5 HOH B 4 404 195 HOH HOH . 
Y 5 HOH B 5 405 157 HOH HOH . 
Y 5 HOH B 6 406 129 HOH HOH . 
Y 5 HOH B 7 407 105 HOH HOH . 
Y 5 HOH B 8 408 146 HOH HOH . 
Y 5 HOH B 9 409 66 HOH HOH . 
Y 5 HOH B 10 410 127 HOH HOH . 
Y 5 HOH B 11 411 27 HOH HOH . 
Y 5 HOH B 12 412 103 HOH HOH . 
Y 5 HOH B 13 413 170 HOH HOH . 
Y 5 HOH B 14 414 112 HOH HOH . 
Y 5 HOH B 15 415 17 HOH HOH . 
Y 5 HOH B 16 416 8 HOH HOH . 
Y 5 HOH B 17 417 95 HOH HOH . 
Y 5 HOH B 18 418 128 HOH HOH . 
Y 5 HOH B 19 419 63 HOH HOH . 
Y 5 HOH B 20 420 21 HOH HOH . 
Y 5 HOH B 21 421 134 HOH HOH . 
Y 5 HOH B 22 422 142 HOH HOH . 
Y 5 HOH B 23 423 174 HOH HOH . 
Y 5 HOH B 24 424 85 HOH HOH . 
Y 5 HOH B 25 425 33 HOH HOH . 
Y 5 HOH B 26 426 99 HOH HOH . 
Y 5 HOH B 27 427 158 HOH HOH . 
Y 5 HOH B 28 428 79 HOH HOH . 
Y 5 HOH B 29 429 137 HOH HOH . 
Y 5 HOH B 30 430 167 HOH HOH . 
Y 5 HOH B 31 431 65 HOH HOH . 
Y 5 HOH B 32 432 98 HOH HOH . 
Y 5 HOH B 33 433 138 HOH HOH . 
Y 5 HOH B 34 434 194 HOH HOH . 
Y 5 HOH B 35 435 130 HOH HOH . 
Y 5 HOH B 36 436 141 HOH HOH . 
Y 5 HOH B 37 437 22 HOH HOH . 
Y 5 HOH B 38 438 198 HOH HOH . 
Y 5 HOH B 39 439 187 HOH HOH . 
Y 5 HOH B 40 440 199 HOH HOH . 
Y 5 HOH B 41 441 68 HOH HOH . 
Y 5 HOH B 42 442 165 HOH HOH . 
Z 5 HOH C 1 601 121 HOH HOH . 
Z 5 HOH C 2 602 94 HOH HOH . 
Z 5 HOH C 3 603 191 HOH HOH . 
Z 5 HOH C 4 604 201 HOH HOH . 
Z 5 HOH C 5 605 196 HOH HOH . 
Z 5 HOH C 6 606 91 HOH HOH . 
AA 5 HOH D 1 1401 81 HOH HOH . 
AA 5 HOH D 2 1402 64 HOH HOH . 
AA 5 HOH D 3 1403 133 HOH HOH . 
AA 5 HOH D 4 1404 58 HOH HOH . 
AA 5 HOH D 5 1405 41 HOH HOH . 
AA 5 HOH D 6 1406 89 HOH HOH . 
AA 5 HOH D 7 1407 10 HOH HOH . 
AA 5 HOH D 8 1408 155 HOH HOH . 
AA 5 HOH D 9 1409 153 HOH HOH . 
AA 5 HOH D 10 1410 169 HOH HOH . 
AA 5 HOH D 11 1411 6 HOH HOH . 
AA 5 HOH D 12 1412 122 HOH HOH . 
AA 5 HOH D 13 1413 9 HOH HOH . 
AA 5 HOH D 14 1414 161 HOH HOH . 
AA 5 HOH D 15 1415 172 HOH HOH . 
AA 5 HOH D 16 1416 78 HOH HOH . 
AA 5 HOH D 17 1417 42 HOH HOH . 
AA 5 HOH D 18 1418 43 HOH HOH . 
AA 5 HOH D 19 1419 18 HOH HOH . 
AA 5 HOH D 20 1420 132 HOH HOH . 
AA 5 HOH D 21 1421 44 HOH HOH . 
AA 5 HOH D 22 1422 131 HOH HOH . 
AA 5 HOH D 23 1423 156 HOH HOH . 
AA 5 HOH D 24 1424 197 HOH HOH . 
AA 5 HOH D 25 1425 123 HOH HOH . 
AA 5 HOH D 26 1426 147 HOH HOH . 
AA 5 HOH D 27 1427 160 HOH HOH . 
AA 5 HOH D 28 1428 151 HOH HOH . 
AA 5 HOH D 29 1429 176 HOH HOH . 
AA 5 HOH D 30 1430 193 HOH HOH . 
AA 5 HOH D 31 1431 150 HOH HOH . 
AA 5 HOH D 32 1432 159 HOH HOH . 
AA 5 HOH D 33 1433 75 HOH HOH . 
AA 5 HOH D 34 1434 202 HOH HOH . 
AA 5 HOH D 35 1435 140 HOH HOH . 
AA 5 HOH D 36 1436 168 HOH HOH . 
AA 5 HOH D 37 1437 118 HOH HOH . 
AA 5 HOH D 38 1438 40 HOH HOH . 
AA 5 HOH D 39 1439 190 HOH HOH . 
AA 5 HOH D 40 1440 144 HOH HOH . 
AA 5 HOH D 41 1441 145 HOH HOH . 
AA 5 HOH D 42 1442 192 HOH HOH . 
AA 5 HOH D 43 1443 152 HOH HOH . 
AA 5 HOH D 44 1444 96 HOH HOH . 
AA 5 HOH D 45 1445 74 HOH HOH . 
AA 5 HOH D 46 1446 3 HOH HOH . 
AA 5 HOH D 47 1447 171 HOH HOH . 
AA 5 HOH D 48 1448 50 HOH HOH . 
AA 5 HOH D 49 1449 154 HOH HOH . 
AA 5 HOH D 50 1450 77 HOH HOH . 
AA 5 HOH D 51 1451 71 HOH HOH . 
AA 5 HOH D 52 1452 116 HOH HOH . 
AA 5 HOH D 53 1453 97 HOH HOH . 
AA 5 HOH D 54 1454 189 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 2 -17.228 7.558 10.429 1 72.59 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . F 2 -18.592 7.941 10.637 1 78.45 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . F 2 -17.086 6.059 10.659 1 73.16 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . F 2 -17.381 5.753 12.027 1 66.63 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#