data_8A1T
#
_model_server_result.job_id            TpbQ_cnoep_1wvpocQ0tbA 
_model_server_result.datetime_utc      '2024-11-23 07:31:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1000}' 
#
_entry.id    8A1T 
#
_exptl.entry_id    8A1T 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A1T 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale2 C OG1 THR 225 C THR 225 1_555 O P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
metalc ? metalc1 B O ALA 263 B ALA 263 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc2 B O VAL 275 B VAL 275 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc3 B O VAL 332 B VAL 332 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc4 B O ILE 371 B ILE 371 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc5 B O ARG 372 B ARG 372 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc6 B O ASN 375 B ASN 375 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
metalc ? metalc7 B O TYR 378 B TYR 378 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc8 D SG CYS 29 D CYS 29 1_555 Q FE2 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc9 D SG CYS 112 D CYS 112 1_555 Q FE1 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc10 Q FE1 FES . D FES 302 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc11 Q FE2 FES . D FES 302 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc12 F SG CYS 70 F CYS 70 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc13 F SG CYS 76 F CYS 76 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc14 F SG CYS 79 F CYS 79 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc15 F SG CYS 111 F CYS 111 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 310 n n 
N1 C10 FMN doub 311 n n 
C2 O2 FMN doub 312 n n 
C2 N3 FMN sing 313 n n 
N3 C4 FMN sing 314 n n 
N3 HN3 FMN sing 315 n n 
C4 O4 FMN doub 316 n n 
C4 C4A FMN sing 317 n n 
C4A N5 FMN doub 318 n n 
C4A C10 FMN sing 319 n n 
N5 C5A FMN sing 320 n n 
C5A C6 FMN doub 321 n y 
C5A C9A FMN sing 322 n y 
C6 C7 FMN sing 323 n y 
C6 H6 FMN sing 324 n n 
C7 C7M FMN sing 325 n n 
C7 C8 FMN doub 326 n y 
C7M HM71 FMN sing 327 n n 
C7M HM72 FMN sing 328 n n 
C7M HM73 FMN sing 329 n n 
C8 C8M FMN sing 330 n n 
C8 C9 FMN sing 331 n y 
C8M HM81 FMN sing 332 n n 
C8M HM82 FMN sing 333 n n 
C8M HM83 FMN sing 334 n n 
C9 C9A FMN doub 335 n y 
C9 H9 FMN sing 336 n n 
C9A N10 FMN sing 337 n n 
N10 C10 FMN sing 338 n n 
N10 C1' FMN sing 339 n n 
C1' C2' FMN sing 340 n n 
C1' "H1'1" FMN sing 341 n n 
C1' "H1'2" FMN sing 342 n n 
C2' O2' FMN sing 343 n n 
C2' C3' FMN sing 344 n n 
C2' H2' FMN sing 345 n n 
O2' HO2' FMN sing 346 n n 
C3' O3' FMN sing 347 n n 
C3' C4' FMN sing 348 n n 
C3' H3' FMN sing 349 n n 
O3' HO3' FMN sing 350 n n 
C4' O4' FMN sing 351 n n 
C4' C5' FMN sing 352 n n 
C4' H4' FMN sing 353 n n 
O4' HO4' FMN sing 354 n n 
C5' O5' FMN sing 355 n n 
C5' "H5'1" FMN sing 356 n n 
C5' "H5'2" FMN sing 357 n n 
O5' P FMN sing 358 n n 
P O1P FMN doub 359 n n 
P O2P FMN sing 360 n n 
P O3P FMN sing 361 n n 
O2P HOP2 FMN sing 362 n n 
O3P HOP3 FMN sing 363 n n 
#
_atom_sites.entry_id                     8A1T 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 FMN B 1 501 600 FMN FMN . 
H 8 RBF B 1 502 601 RBF RBF . 
I 9 LMT B 1 503 605 LMT LMT . 
J 10 3PE B 1 504 606 3PE 3PE . 
K 10 3PE B 1 505 608 3PE 3PE . 
L 9 LMT B 1 506 1002 LMT LMT . 
M 11 NA B 1 507 1 NA NA . 
N 12 K B 1 508 2 K K . 
O 7 FMN C 1 1000 1000 FMN FMN . 
P 10 3PE D 1 301 602 3PE 3PE . 
Q 13 FES D 1 302 1001 FES FES . 
R 9 LMT E 1 201 603 LMT LMT . 
S 14 FAD F 1 1501 1501 FAD FAD . 
T 13 FES F 1 1502 1502 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . O 7 134.812 143.628 145.006 1 54.79 ? N1 FMN 1000 C 1 
HETATM 2 C C2 FMN . . . O 7 135.865 144.491 144.788 1 50.83 ? C2 FMN 1000 C 1 
HETATM 3 O O2 FMN . . . O 7 136.434 145.014 145.741 1 54.05 ? O2 FMN 1000 C 1 
HETATM 4 N N3 FMN . . . O 7 136.284 144.768 143.506 1 49.96 ? N3 FMN 1000 C 1 
HETATM 5 C C4 FMN . . . O 7 135.646 144.182 142.437 1 53.16 ? C4 FMN 1000 C 1 
HETATM 6 O O4 FMN . . . O 7 136.018 144.425 141.292 1 57 ? O4 FMN 1000 C 1 
HETATM 7 C C4A FMN . . . O 7 134.586 143.312 142.651 1 51.95 ? C4A FMN 1000 C 1 
HETATM 8 N N5 FMN . . . O 7 133.951 142.724 141.582 1 53.49 ? N5 FMN 1000 C 1 
HETATM 9 C C5A FMN . . . O 7 132.899 141.861 141.796 1 51.14 ? C5A FMN 1000 C 1 
HETATM 10 C C6 FMN . . . O 7 132.272 141.279 140.703 1 51.66 ? C6 FMN 1000 C 1 
HETATM 11 C C7 FMN . . . O 7 131.208 140.407 140.885 1 49.01 ? C7 FMN 1000 C 1 
HETATM 12 C C7M FMN . . . O 7 130.563 139.801 139.671 1 45.48 ? C7M FMN 1000 C 1 
HETATM 13 C C8 FMN . . . O 7 130.777 140.122 142.178 1 55.32 ? C8 FMN 1000 C 1 
HETATM 14 C C8M FMN . . . O 7 129.637 139.185 142.437 1 48.54 ? C8M FMN 1000 C 1 
HETATM 15 C C9 FMN . . . O 7 131.408 140.701 143.271 1 57.33 ? C9 FMN 1000 C 1 
HETATM 16 C C9A FMN . . . O 7 132.471 141.579 143.089 1 51.31 ? C9A FMN 1000 C 1 
HETATM 17 N N10 FMN . . . O 7 133.116 142.166 144.169 1 48.77 ? N10 FMN 1000 C 1 
HETATM 18 C C10 FMN . . . O 7 134.166 143.034 143.943 1 52.01 ? C10 FMN 1000 C 1 
HETATM 19 C C1' FMN . . . O 7 132.703 141.923 145.597 1 47.76 ? C1' FMN 1000 C 1 
HETATM 20 C C2' FMN . . . O 7 133.647 140.96 146.306 1 49.14 ? C2' FMN 1000 C 1 
HETATM 21 O O2' FMN . . . O 7 133.532 139.687 145.714 1 58.56 ? O2' FMN 1000 C 1 
HETATM 22 C C3' FMN . . . O 7 133.326 140.851 147.794 1 45.25 ? C3' FMN 1000 C 1 
HETATM 23 O O3' FMN . . . O 7 132.029 140.325 147.955 1 53.8 ? O3' FMN 1000 C 1 
HETATM 24 C C4' FMN . . . O 7 133.411 142.208 148.485 1 49.07 ? C4' FMN 1000 C 1 
HETATM 25 O O4' FMN . . . O 7 134.553 142.894 148.024 1 60.6 ? O4' FMN 1000 C 1 
HETATM 26 C C5' FMN . . . O 7 133.474 142.105 150.003 1 51.54 ? C5' FMN 1000 C 1 
HETATM 27 O O5' FMN . . . O 7 134.211 143.211 150.47 1 59.33 ? O5' FMN 1000 C 1 
HETATM 28 P P FMN . . . O 7 134.11 143.735 151.986 1 69.71 ? P FMN 1000 C 1 
HETATM 29 O O1P FMN . . . O 7 134.409 142.614 152.952 1 63.39 ? O1P FMN 1000 C 1 
HETATM 30 O O2P FMN . . . O 7 132.774 144.38 152.262 1 54.83 ? O2P FMN 1000 C 1 
HETATM 31 H HN3 FMN . . . O 7 137.122 145.363 143.35 1 54.53 ? HN3 FMN 1000 C 1 
HETATM 32 H H6 FMN . . . O 7 132.595 141.535 139.695 1 52.84 ? H6 FMN 1000 C 1 
HETATM 33 H HM71 FMN . . . O 7 129.967 138.929 139.938 1 49.06 ? HM71 FMN 1000 C 1 
HETATM 34 H HM72 FMN . . . O 7 131.338 139.501 138.965 1 50.68 ? HM72 FMN 1000 C 1 
HETATM 35 H HM73 FMN . . . O 7 129.918 140.543 139.2 1 49.78 ? HM73 FMN 1000 C 1 
HETATM 36 H HM81 FMN . . . O 7 129.411 139.169 143.503 1 49.61 ? HM81 FMN 1000 C 1 
HETATM 37 H HM82 FMN . . . O 7 129.929 138.189 142.112 1 49.93 ? HM82 FMN 1000 C 1 
HETATM 38 H HM83 FMN . . . O 7 128.757 139.501 141.881 1 49.13 ? HM83 FMN 1000 C 1 
HETATM 39 H H9 FMN . . . O 7 131.263 140.243 144.248 1 52.48 ? H9 FMN 1000 C 1 
HETATM 40 H "H1'1" FMN . . . O 7 131.684 141.548 145.663 1 51.74 ? "H1'1" FMN 1000 C 1 
HETATM 41 H "H1'2" FMN . . . O 7 132.709 142.885 146.106 1 52.87 ? "H1'2" FMN 1000 C 1 
HETATM 42 H H2' FMN . . . O 7 134.669 141.321 146.193 1 52.38 ? H2' FMN 1000 C 1 
HETATM 43 H HO2' FMN . . . O 7 133.272 139.032 146.396 1 53.02 ? HO2' FMN 1000 C 1 
HETATM 44 H H3' FMN . . . O 7 134.052 140.181 148.255 1 51.71 ? H3' FMN 1000 C 1 
HETATM 45 H HO3' FMN . . . O 7 131.486 140.943 148.488 1 52.08 ? HO3' FMN 1000 C 1 
HETATM 46 H H4' FMN . . . O 7 132.518 142.779 148.234 1 52.32 ? H4' FMN 1000 C 1 
HETATM 47 H HO4' FMN . . . O 7 135.114 143.144 148.787 1 54.94 ? HO4' FMN 1000 C 1 
HETATM 48 H "H5'1" FMN . . . O 7 133.963 141.177 150.299 1 52.92 ? "H5'1" FMN 1000 C 1 
HETATM 49 H "H5'2" FMN . . . O 7 132.469 142.118 150.424 1 51.87 ? "H5'2" FMN 1000 C 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           49 
#