data_8A1T # _model_server_result.job_id SSNQOLYvABcASRoGvt7XIg _model_server_result.datetime_utc '2024-11-27 00:08:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 8A1T # _exptl.entry_id 8A1T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A1T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 L N N ? 9 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 O P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 B O ALA 263 B ALA 263 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc2 B O VAL 275 B VAL 275 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 B O VAL 332 B VAL 332 1_555 M NA NA . B NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 B O ILE 371 B ILE 371 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc5 B O ARG 372 B ARG 372 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc6 B O ASN 375 B ASN 375 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc7 B O TYR 378 B TYR 378 1_555 N K K . B K 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc8 D SG CYS 29 D CYS 29 1_555 Q FE2 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 D SG CYS 112 D CYS 112 1_555 Q FE1 FES . D FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 Q FE1 FES . D FES 302 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc11 Q FE2 FES . D FES 302 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 F SG CYS 70 F CYS 70 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc13 F SG CYS 76 F CYS 76 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc14 F SG CYS 79 F CYS 79 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc15 F SG CYS 111 F CYS 111 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 473 n n C1B O1B LMT sing 474 n n C1B O5B LMT sing 475 n n C1B H1B LMT sing 476 n n C2B C3B LMT sing 477 n n C2B O2B LMT sing 478 n n C2B H2B LMT sing 479 n n C3B C4B LMT sing 480 n n C3B O3B LMT sing 481 n n C3B H3B LMT sing 482 n n C4B C5B LMT sing 483 n n C4B O4' LMT sing 484 n n C4B H4B LMT sing 485 n n C5B C6B LMT sing 486 n n C5B O5B LMT sing 487 n n C5B H5B LMT sing 488 n n C6B O6B LMT sing 489 n n C6B "H6'2" LMT sing 490 n n C6B "H6'1" LMT sing 491 n n O1B C4' LMT sing 492 n n O2B H2O1 LMT sing 493 n n O3B H3O1 LMT sing 494 n n O4' H4O1 LMT sing 495 n n O6B H6B LMT sing 496 n n C1' C2' LMT sing 497 n n C1' O1' LMT sing 498 n n C1' O5' LMT sing 499 n n C1' H1' LMT sing 500 n n C2' C3' LMT sing 501 n n C2' O2' LMT sing 502 n n C2' H2' LMT sing 503 n n C3' C4' LMT sing 504 n n C3' O3' LMT sing 505 n n C3' H3' LMT sing 506 n n C4' C5' LMT sing 507 n n C4' H4' LMT sing 508 n n C5' C6' LMT sing 509 n n C5' O5' LMT sing 510 n n C5' H5' LMT sing 511 n n C6' O6' LMT sing 512 n n C6' H6D LMT sing 513 n n C6' H6E LMT sing 514 n n O1' C1 LMT sing 515 n n O2' H2O2 LMT sing 516 n n O3' H3O2 LMT sing 517 n n O6' H6' LMT sing 518 n n C1 C2 LMT sing 519 n n C1 H12 LMT sing 520 n n C1 H11 LMT sing 521 n n C2 C3 LMT sing 522 n n C2 H22 LMT sing 523 n n C2 H21 LMT sing 524 n n C3 C4 LMT sing 525 n n C3 H32 LMT sing 526 n n C3 H31 LMT sing 527 n n C4 C5 LMT sing 528 n n C4 H42 LMT sing 529 n n C4 H41 LMT sing 530 n n C5 C6 LMT sing 531 n n C5 H52 LMT sing 532 n n C5 H51 LMT sing 533 n n C6 C7 LMT sing 534 n n C6 H62 LMT sing 535 n n C6 H61 LMT sing 536 n n C7 C8 LMT sing 537 n n C7 H72 LMT sing 538 n n C7 H71 LMT sing 539 n n C8 C9 LMT sing 540 n n C8 H82 LMT sing 541 n n C8 H81 LMT sing 542 n n C9 C10 LMT sing 543 n n C9 H92 LMT sing 544 n n C9 H91 LMT sing 545 n n C10 C11 LMT sing 546 n n C10 H102 LMT sing 547 n n C10 H101 LMT sing 548 n n C11 C12 LMT sing 549 n n C11 H112 LMT sing 550 n n C11 H111 LMT sing 551 n n C12 H123 LMT sing 552 n n C12 H122 LMT sing 553 n n C12 H121 LMT sing 554 n n # _atom_sites.entry_id 8A1T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 605 LMT LMT . J 10 3PE B 1 504 606 3PE 3PE . K 10 3PE B 1 505 608 3PE 3PE . L 9 LMT B 1 506 1002 LMT LMT . M 11 NA B 1 507 1 NA NA . N 12 K B 1 508 2 K K . O 7 FMN C 1 1000 1000 FMN FMN . P 10 3PE D 1 301 602 3PE 3PE . Q 13 FES D 1 302 1001 FES FES . R 9 LMT E 1 201 603 LMT LMT . S 14 FAD F 1 1501 1501 FAD FAD . T 13 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . I 9 141.846 119.659 160.244 1 52.6 ? C1B LMT 503 B 1 HETATM 2 C C2B LMT . . . I 9 141.241 120.989 159.752 1 53.98 ? C2B LMT 503 B 1 HETATM 3 C C3B LMT . . . I 9 142.292 122.114 159.808 1 54.95 ? C3B LMT 503 B 1 HETATM 4 C C4B LMT . . . I 9 143.722 121.535 159.693 1 56.2 ? C4B LMT 503 B 1 HETATM 5 C C5B LMT . . . I 9 143.651 120.263 158.832 1 57.88 ? C5B LMT 503 B 1 HETATM 6 C C6B LMT . . . I 9 145.062 119.764 158.547 1 54.65 ? C6B LMT 503 B 1 HETATM 7 O O1B LMT . . . I 9 140.849 118.68 160.354 1 53.69 ? O1B LMT 503 B 1 HETATM 8 O O2B LMT . . . I 9 140.824 120.801 158.464 1 55.63 ? O2B LMT 503 B 1 HETATM 9 O O3B LMT . . . I 9 142.133 122.899 160.92 1 49.56 ? O3B LMT 503 B 1 HETATM 10 O O4' LMT . . . I 9 144.562 122.44 159.088 1 50.8 ? O4' LMT 503 B 1 HETATM 11 O O5B LMT . . . I 9 142.888 119.232 159.418 1 55.99 ? O5B LMT 503 B 1 HETATM 12 O O6B LMT . . . I 9 145.086 118.394 158.545 1 54.65 ? O6B LMT 503 B 1 HETATM 13 C C1' LMT . . . I 9 139.484 115.474 158.111 1 55.27 ? C1' LMT 503 B 1 HETATM 14 C C2' LMT . . . I 9 140.749 116.148 157.551 1 52.49 ? C2' LMT 503 B 1 HETATM 15 C C3' LMT . . . I 9 141.378 117.109 158.596 1 49.19 ? C3' LMT 503 B 1 HETATM 16 C C4' LMT . . . I 9 140.323 118.053 159.197 1 52.95 ? C4' LMT 503 B 1 HETATM 17 C C5' LMT . . . I 9 139.184 117.124 159.666 1 57.44 ? C5' LMT 503 B 1 HETATM 18 C C6' LMT . . . I 9 138.11 117.805 160.468 1 59.72 ? C6' LMT 503 B 1 HETATM 19 O O1' LMT . . . I 9 138.826 114.805 157.122 1 51.58 ? O1' LMT 503 B 1 HETATM 20 O O2' LMT . . . I 9 141.66 115.166 157.258 1 53.28 ? O2' LMT 503 B 1 HETATM 21 O O3' LMT . . . I 9 142.376 117.837 158.025 1 45.79 ? O3' LMT 503 B 1 HETATM 22 O O5' LMT . . . I 9 138.601 116.475 158.573 1 53.22 ? O5' LMT 503 B 1 HETATM 23 O O6' LMT . . . I 9 137.031 116.96 160.445 1 54.7 ? O6' LMT 503 B 1 HETATM 24 C C1 LMT . . . I 9 139.013 113.409 157.138 1 53.47 ? C1 LMT 503 B 1 HETATM 25 C C2 LMT . . . I 9 138.641 112.96 155.758 1 50.85 ? C2 LMT 503 B 1 HETATM 26 C C3 LMT . . . I 9 137.201 113.085 155.383 1 53.91 ? C3 LMT 503 B 1 HETATM 27 C C4 LMT . . . I 9 136.446 111.988 156.086 1 50.7 ? C4 LMT 503 B 1 HETATM 28 C C5 LMT . . . I 9 135.026 111.969 155.633 1 52.44 ? C5 LMT 503 B 1 HETATM 29 C C6 LMT . . . I 9 134.283 110.79 156.17 1 53.76 ? C6 LMT 503 B 1 HETATM 30 C C7 LMT . . . I 9 132.892 110.748 155.601 1 55.67 ? C7 LMT 503 B 1 HETATM 31 C C8 LMT . . . I 9 132.09 111.854 156.194 1 53.75 ? C8 LMT 503 B 1 HETATM 32 C C9 LMT . . . I 9 130.609 111.659 156.125 1 52.37 ? C9 LMT 503 B 1 HETATM 33 C C10 LMT . . . I 9 130.204 111.727 154.68 1 51.8 ? C10 LMT 503 B 1 HETATM 34 C C11 LMT . . . I 9 128.771 112.124 154.536 1 54.36 ? C11 LMT 503 B 1 HETATM 35 C C12 LMT . . . I 9 127.861 111.169 155.232 1 54.74 ? C12 LMT 503 B 1 HETATM 36 H H1B LMT . . . I 9 142.277 119.849 161.092 1 50.44 ? H1B LMT 503 B 1 HETATM 37 H H2B LMT . . . I 9 140.534 121.227 160.372 1 49.95 ? H2B LMT 503 B 1 HETATM 38 H H3B LMT . . . I 9 142.133 122.67 159.03 1 49.92 ? H3B LMT 503 B 1 HETATM 39 H H4B LMT . . . I 9 144.022 121.27 160.577 1 50.78 ? H4B LMT 503 B 1 HETATM 40 H H5B LMT . . . I 9 143.257 120.504 157.98 1 50.47 ? H5B LMT 503 B 1 HETATM 41 H "H6'2" LMT . . . I 9 145.662 120.187 159.18 1 50.19 ? "H6'2" LMT 503 B 1 HETATM 42 H "H6'1" LMT . . . I 9 145.355 120.151 157.707 1 50.67 ? "H6'1" LMT 503 B 1 HETATM 43 H H1' LMT . . . I 9 139.749 114.907 158.851 1 51.37 ? H1' LMT 503 B 1 HETATM 44 H H2' LMT . . . I 9 140.471 116.687 156.794 1 50.13 ? H2' LMT 503 B 1 HETATM 45 H H3' LMT . . . I 9 141.678 116.548 159.328 1 50.26 ? H3' LMT 503 B 1 HETATM 46 H H4' LMT . . . I 9 140 118.662 158.518 1 49.83 ? H4' LMT 503 B 1 HETATM 47 H H5' LMT . . . I 9 139.606 116.495 160.27 1 51.23 ? H5' LMT 503 B 1 HETATM 48 H H6D LMT . . . I 9 137.928 118.67 160.071 1 50.86 ? H6D LMT 503 B 1 HETATM 49 H H6E LMT . . . I 9 138.451 118.044 161.344 1 50.87 ? H6E LMT 503 B 1 HETATM 50 H H12 LMT . . . I 9 138.487 112.94 157.805 1 50.84 ? H12 LMT 503 B 1 HETATM 51 H H11 LMT . . . I 9 139.929 113.184 157.364 1 51.4 ? H11 LMT 503 B 1 HETATM 52 H H22 LMT . . . I 9 138.904 112.031 155.659 1 50.47 ? H22 LMT 503 B 1 HETATM 53 H H21 LMT . . . I 9 139.176 113.455 155.118 1 49.58 ? H21 LMT 503 B 1 HETATM 54 H H32 LMT . . . I 9 137.068 113.025 154.424 1 50.06 ? H32 LMT 503 B 1 HETATM 55 H H31 LMT . . . I 9 136.841 113.948 155.64 1 49.88 ? H31 LMT 503 B 1 HETATM 56 H H42 LMT . . . I 9 136.503 112.108 157.047 1 49.41 ? H42 LMT 503 B 1 HETATM 57 H H41 LMT . . . I 9 136.864 111.13 155.915 1 50.75 ? H41 LMT 503 B 1 HETATM 58 H H52 LMT . . . I 9 134.993 111.965 154.664 1 50.36 ? H52 LMT 503 B 1 HETATM 59 H H51 LMT . . . I 9 134.593 112.792 155.907 1 48.92 ? H51 LMT 503 B 1 HETATM 60 H H62 LMT . . . I 9 134.252 110.816 157.139 1 50.38 ? H62 LMT 503 B 1 HETATM 61 H H61 LMT . . . I 9 134.754 109.967 155.965 1 50.66 ? H61 LMT 503 B 1 HETATM 62 H H72 LMT . . . I 9 132.482 109.887 155.78 1 51.1 ? H72 LMT 503 B 1 HETATM 63 H H71 LMT . . . I 9 132.923 110.817 154.634 1 50.66 ? H71 LMT 503 B 1 HETATM 64 H H82 LMT . . . I 9 132.321 112.687 155.756 1 49.33 ? H82 LMT 503 B 1 HETATM 65 H H81 LMT . . . I 9 132.347 111.981 157.121 1 50.31 ? H81 LMT 503 B 1 HETATM 66 H H92 LMT . . . I 9 130.136 112.326 156.645 1 50.07 ? H92 LMT 503 B 1 HETATM 67 H H91 LMT . . . I 9 130.354 110.809 156.519 1 50.74 ? H91 LMT 503 B 1 HETATM 68 H H102 LMT . . . I 9 130.359 110.87 154.251 1 50.24 ? H102 LMT 503 B 1 HETATM 69 H H101 LMT . . . I 9 130.777 112.349 154.207 1 49.65 ? H101 LMT 503 B 1 HETATM 70 H H112 LMT . . . I 9 128.549 112.166 153.592 1 50.22 ? H112 LMT 503 B 1 HETATM 71 H H111 LMT . . . I 9 128.645 113.019 154.888 1 50.4 ? H111 LMT 503 B 1 HETATM 72 H H123 LMT . . . I 9 126.937 111.299 154.966 1 51.05 ? H123 LMT 503 B 1 HETATM 73 H H122 LMT . . . I 9 127.899 111.273 156.196 1 50.57 ? H122 LMT 503 B 1 HETATM 74 H H121 LMT . . . I 9 128.102 110.254 155.018 1 51.61 ? H121 LMT 503 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #