data_8A1X # _model_server_result.job_id BXUELFvwm8EFXJtC_qAAIA _model_server_result.datetime_utc '2024-11-27 00:07:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1501}' # _entry.id 8A1X # _exptl.entry_id 8A1X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 785.55 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A1X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 L P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 E SG CYS 26 E CYS 26 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 E SG CYS 120 E CYS 120 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 F SG CYS 70 F CYS 70 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 F SG CYS 76 F CYS 76 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 F SG CYS 79 F CYS 79 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 F SG CYS 111 F CYS 111 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 215 n n PA O2A FAD sing 216 n n PA O5B FAD sing 217 n n PA O3P FAD sing 218 n n O2A HOA2 FAD sing 219 n n O5B C5B FAD sing 220 n n C5B C4B FAD sing 221 n n C5B H51A FAD sing 222 n n C5B H52A FAD sing 223 n n C4B O4B FAD sing 224 n n C4B C3B FAD sing 225 n n C4B H4B FAD sing 226 n n O4B C1B FAD sing 227 n n C3B O3B FAD sing 228 n n C3B C2B FAD sing 229 n n C3B H3B FAD sing 230 n n O3B HO3A FAD sing 231 n n C2B O2B FAD sing 232 n n C2B C1B FAD sing 233 n n C2B H2B FAD sing 234 n n O2B HO2A FAD sing 235 n n C1B N9A FAD sing 236 n n C1B H1B FAD sing 237 n n N9A C8A FAD sing 238 n y N9A C4A FAD sing 239 n y C8A N7A FAD doub 240 n y C8A H8A FAD sing 241 n n N7A C5A FAD sing 242 n y C5A C6A FAD sing 243 n y C5A C4A FAD doub 244 n y C6A N6A FAD sing 245 n n C6A N1A FAD doub 246 n y N6A H61A FAD sing 247 n n N6A H62A FAD sing 248 n n N1A C2A FAD sing 249 n y C2A N3A FAD doub 250 n y C2A H2A FAD sing 251 n n N3A C4A FAD sing 252 n y N1 C2 FAD sing 253 n n N1 C10 FAD doub 254 n n C2 O2 FAD doub 255 n n C2 N3 FAD sing 256 n n N3 C4 FAD sing 257 n n N3 HN3 FAD sing 258 n n C4 O4 FAD doub 259 n n C4 C4X FAD sing 260 n n C4X N5 FAD doub 261 n n C4X C10 FAD sing 262 n n N5 C5X FAD sing 263 n n C5X C6 FAD doub 264 n y C5X C9A FAD sing 265 n y C6 C7 FAD sing 266 n y C6 H6 FAD sing 267 n n C7 C7M FAD sing 268 n n C7 C8 FAD doub 269 n y C7M HM71 FAD sing 270 n n C7M HM72 FAD sing 271 n n C7M HM73 FAD sing 272 n n C8 C8M FAD sing 273 n n C8 C9 FAD sing 274 n y C8M HM81 FAD sing 275 n n C8M HM82 FAD sing 276 n n C8M HM83 FAD sing 277 n n C9 C9A FAD doub 278 n y C9 H9 FAD sing 279 n n C9A N10 FAD sing 280 n n N10 C10 FAD sing 281 n n N10 C1' FAD sing 282 n n C1' C2' FAD sing 283 n n C1' "H1'1" FAD sing 284 n n C1' "H1'2" FAD sing 285 n n C2' O2' FAD sing 286 n n C2' C3' FAD sing 287 n n C2' H2' FAD sing 288 n n O2' HO2' FAD sing 289 n n C3' O3' FAD sing 290 n n C3' C4' FAD sing 291 n n C3' H3' FAD sing 292 n n O3' HO3' FAD sing 293 n n C4' O4' FAD sing 294 n n C4' C5' FAD sing 295 n n C4' H4' FAD sing 296 n n O4' HO4' FAD sing 297 n n C5' O5' FAD sing 298 n n C5' "H5'1" FAD sing 299 n n C5' "H5'2" FAD sing 300 n n O5' P FAD sing 301 n n P O1P FAD doub 302 n n P O2P FAD sing 303 n n P O3P FAD sing 304 n n O2P HOP2 FAD sing 305 n n # _atom_sites.entry_id 8A1X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 603 LMT LMT . J 9 LMT B 1 504 605 LMT LMT . K 10 3PE B 1 505 606 3PE 3PE . L 7 FMN C 1 1000 1000 FMN FMN . M 10 3PE D 1 301 602 3PE 3PE . N 9 LMT D 1 302 1002 LMT LMT . O 11 FES E 1 1001 1001 FES FES . P 12 FAD F 1 1501 1501 FAD FAD . Q 11 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . P 12 113.07 126.569 82.317 1 71.33 ? PA FAD 1501 F 1 HETATM 2 O O1A FAD . . . P 12 114.043 127.377 81.543 1 67.11 ? O1A FAD 1501 F 1 HETATM 3 O O2A FAD . . . P 12 113.688 125.587 83.319 1 61.04 ? O2A FAD 1501 F 1 HETATM 4 O O5B FAD . . . P 12 112.036 127.494 83.056 1 61.35 ? O5B FAD 1501 F 1 HETATM 5 C C5B FAD . . . P 12 111.337 127.043 84.235 1 59.87 ? C5B FAD 1501 F 1 HETATM 6 C C4B FAD . . . P 12 110.157 127.946 84.496 1 62.96 ? C4B FAD 1501 F 1 HETATM 7 O O4B FAD . . . P 12 110.523 128.934 85.487 1 66.37 ? O4B FAD 1501 F 1 HETATM 8 C C3B FAD . . . P 12 109.665 128.735 83.285 1 63.17 ? C3B FAD 1501 F 1 HETATM 9 O O3B FAD . . . P 12 108.255 128.919 83.334 1 65.79 ? O3B FAD 1501 F 1 HETATM 10 C C2B FAD . . . P 12 110.417 130.059 83.423 1 60.53 ? C2B FAD 1501 F 1 HETATM 11 O O2B FAD . . . P 12 109.733 131.135 82.791 1 59.18 ? O2B FAD 1501 F 1 HETATM 12 C C1B FAD . . . P 12 110.417 130.235 84.941 1 62.48 ? C1B FAD 1501 F 1 HETATM 13 N N9A FAD . . . P 12 111.519 131.042 85.459 1 61.41 ? N9A FAD 1501 F 1 HETATM 14 C C8A FAD . . . P 12 112.761 131.21 84.904 1 62.65 ? C8A FAD 1501 F 1 HETATM 15 N N7A FAD . . . P 12 113.552 131.997 85.596 1 65.57 ? N7A FAD 1501 F 1 HETATM 16 C C5A FAD . . . P 12 112.775 132.371 86.682 1 66.53 ? C5A FAD 1501 F 1 HETATM 17 C C6A FAD . . . P 12 113.03 133.2 87.792 1 64.76 ? C6A FAD 1501 F 1 HETATM 18 N N6A FAD . . . P 12 114.19 133.829 87.999 1 64.34 ? N6A FAD 1501 F 1 HETATM 19 N N1A FAD . . . P 12 112.037 133.362 88.695 1 62.02 ? N1A FAD 1501 F 1 HETATM 20 C C2A FAD . . . P 12 110.873 132.737 88.496 1 62.05 ? C2A FAD 1501 F 1 HETATM 21 N N3A FAD . . . P 12 110.522 131.934 87.489 1 63.94 ? N3A FAD 1501 F 1 HETATM 22 C C4A FAD . . . P 12 111.521 131.79 86.611 1 64.86 ? C4A FAD 1501 F 1 HETATM 23 N N1 FAD . . . P 12 109.102 118.512 79.736 1 54.64 ? N1 FAD 1501 F 1 HETATM 24 C C2 FAD . . . P 12 108.223 118.433 78.695 1 61.32 ? C2 FAD 1501 F 1 HETATM 25 O O2 FAD . . . P 12 107.691 119.441 78.219 1 64.12 ? O2 FAD 1501 F 1 HETATM 26 N N3 FAD . . . P 12 107.914 117.198 78.148 1 58.48 ? N3 FAD 1501 F 1 HETATM 27 C C4 FAD . . . P 12 108.42 115.982 78.561 1 53.89 ? C4 FAD 1501 F 1 HETATM 28 O O4 FAD . . . P 12 108.072 114.945 77.998 1 50 ? O4 FAD 1501 F 1 HETATM 29 C C4X FAD . . . P 12 109.351 116.077 79.668 1 59.06 ? C4X FAD 1501 F 1 HETATM 30 N N5 FAD . . . P 12 109.878 114.974 80.122 1 60.86 ? N5 FAD 1501 F 1 HETATM 31 C C5X FAD . . . P 12 110.768 115.064 81.18 1 59.29 ? C5X FAD 1501 F 1 HETATM 32 C C6 FAD . . . P 12 111.34 113.893 81.676 1 55.57 ? C6 FAD 1501 F 1 HETATM 33 C C7 FAD . . . P 12 112.238 113.927 82.738 1 61.41 ? C7 FAD 1501 F 1 HETATM 34 C C7M FAD . . . P 12 112.833 112.638 83.243 1 60.48 ? C7M FAD 1501 F 1 HETATM 35 C C8 FAD . . . P 12 112.578 115.16 83.319 1 61.9 ? C8 FAD 1501 F 1 HETATM 36 C C8M FAD . . . P 12 113.55 115.24 84.469 1 60.39 ? C8M FAD 1501 F 1 HETATM 37 C C9 FAD . . . P 12 112.01 116.329 82.823 1 60.43 ? C9 FAD 1501 F 1 HETATM 38 C C9A FAD . . . P 12 111.11 116.293 81.765 1 62.44 ? C9A FAD 1501 F 1 HETATM 39 N N10 FAD . . . P 12 110.515 117.462 81.242 1 61.13 ? N10 FAD 1501 F 1 HETATM 40 C C10 FAD . . . P 12 109.631 117.389 80.191 1 57.8 ? C10 FAD 1501 F 1 HETATM 41 C C1' FAD . . . P 12 110.83 118.785 81.802 1 59.93 ? C1' FAD 1501 F 1 HETATM 42 C C2' FAD . . . P 12 111.911 119.519 81.017 1 61.85 ? C2' FAD 1501 F 1 HETATM 43 O O2' FAD . . . P 12 113.188 118.928 81.26 1 60.79 ? O2' FAD 1501 F 1 HETATM 44 C C3' FAD . . . P 12 111.944 120.984 81.453 1 63.78 ? C3' FAD 1501 F 1 HETATM 45 O O3' FAD . . . P 12 111.947 121.033 82.875 1 58.67 ? O3' FAD 1501 F 1 HETATM 46 C C4' FAD . . . P 12 110.766 121.812 80.94 1 66.9 ? C4' FAD 1501 F 1 HETATM 47 O O4' FAD . . . P 12 110.496 121.456 79.584 1 69.54 ? O4' FAD 1501 F 1 HETATM 48 C C5' FAD . . . P 12 111.025 123.3 81.039 1 63.77 ? C5' FAD 1501 F 1 HETATM 49 O O5' FAD . . . P 12 111.886 123.7 79.952 1 58.65 ? O5' FAD 1501 F 1 HETATM 50 P P FAD . . . P 12 112.655 125.074 79.982 1 72.03 ? P FAD 1501 F 1 HETATM 51 O O1P FAD . . . P 12 114.16 124.824 80.116 1 65.13 ? O1P FAD 1501 F 1 HETATM 52 O O2P FAD . . . P 12 112.254 125.91 78.827 1 66.68 ? O2P FAD 1501 F 1 HETATM 53 O O3P FAD . . . P 12 112.151 125.736 81.33 1 67.92 ? O3P FAD 1501 F 1 HETATM 54 H H51A FAD . . . P 12 111.918 127.065 84.972 1 61.11 ? H51A FAD 1501 F 1 HETATM 55 H H52A FAD . . . P 12 111.034 126.164 84.101 1 61.36 ? H52A FAD 1501 F 1 HETATM 56 H H4B FAD . . . P 12 109.445 127.433 84.83 1 62 ? H4B FAD 1501 F 1 HETATM 57 H H3B FAD . . . P 12 109.909 128.303 82.488 1 61.57 ? H3B FAD 1501 F 1 HETATM 58 H HO3A FAD . . . P 12 108.027 129.474 82.758 1 61.57 ? HO3A FAD 1501 F 1 HETATM 59 H H2B FAD . . . P 12 111.29 129.972 83.089 1 61.41 ? H2B FAD 1501 F 1 HETATM 60 H HO2A FAD . . . P 12 110.25 131.522 82.267 1 62 ? HO2A FAD 1501 F 1 HETATM 61 H H1B FAD . . . P 12 109.6 130.614 85.205 1 61.88 ? H1B FAD 1501 F 1 HETATM 62 H H8A FAD . . . P 12 113.02 130.805 84.109 1 61.68 ? H8A FAD 1501 F 1 HETATM 63 H H61A FAD . . . P 12 114.83 133.763 87.416 1 61.66 ? H61A FAD 1501 F 1 HETATM 64 H H62A FAD . . . P 12 114.304 134.305 88.716 1 61.66 ? H62A FAD 1501 F 1 HETATM 65 H H2A FAD . . . P 12 110.223 132.88 89.144 1 61.21 ? H2A FAD 1501 F 1 HETATM 66 H HN3 FAD . . . P 12 107.352 117.189 77.487 1 59.35 ? HN3 FAD 1501 F 1 HETATM 67 H H6 FAD . . . P 12 111.025 113.161 81.199 1 59.06 ? H6 FAD 1501 F 1 HETATM 68 H HM71 FAD . . . P 12 112.27 111.923 83.008 1 60.25 ? HM71 FAD 1501 F 1 HETATM 69 H HM72 FAD . . . P 12 113.68 112.51 82.859 1 60.77 ? HM72 FAD 1501 F 1 HETATM 70 H HM73 FAD . . . P 12 112.913 112.67 84.178 1 60.5 ? HM73 FAD 1501 F 1 HETATM 71 H HM81 FAD . . . P 12 114.008 116.058 84.436 1 60.99 ? HM81 FAD 1501 F 1 HETATM 72 H HM82 FAD . . . P 12 114.174 114.541 84.412 1 61.16 ? HM82 FAD 1501 F 1 HETATM 73 H HM83 FAD . . . P 12 113.081 115.176 85.28 1 60.44 ? HM83 FAD 1501 F 1 HETATM 74 H H9 FAD . . . P 12 112.362 117.016 83.34 1 59.95 ? H9 FAD 1501 F 1 HETATM 75 H "H1'1" FAD . . . P 12 111.115 118.696 82.692 1 60.11 ? "H1'1" FAD 1501 F 1 HETATM 76 H "H1'2" FAD . . . P 12 110.052 119.31 81.804 1 60.34 ? "H1'2" FAD 1501 F 1 HETATM 77 H H2' FAD . . . P 12 111.718 119.469 80.1 1 61.1 ? H2' FAD 1501 F 1 HETATM 78 H HO2' FAD . . . P 12 113.777 119.371 80.873 1 60.91 ? HO2' FAD 1501 F 1 HETATM 79 H H3' FAD . . . P 12 112.74 121.371 81.139 1 61.41 ? H3' FAD 1501 F 1 HETATM 80 H HO3' FAD . . . P 12 112.263 121.76 83.127 1 61.36 ? HO3' FAD 1501 F 1 HETATM 81 H H4' FAD . . . P 12 110.01 121.608 81.458 1 61.32 ? H4' FAD 1501 F 1 HETATM 82 H HO4' FAD . . . P 12 110.238 122.128 79.167 1 62 ? HO4' FAD 1501 F 1 HETATM 83 H "H5'1" FAD . . . P 12 111.44 123.492 81.859 1 61.51 ? "H5'1" FAD 1501 F 1 HETATM 84 H "H5'2" FAD . . . P 12 110.211 123.766 80.982 1 61.87 ? "H5'2" FAD 1501 F 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #