data_8A1X
#
_model_server_result.job_id            0xGg_sxf4TTKBp6QUw7qJg 
_model_server_result.datetime_utc      '2024-11-23 07:33:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a1x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    8A1X 
#
_exptl.entry_id    8A1X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              376.364 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIBOFLAVIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A1X 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A1X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale2 C OG1 THR 225 C THR 225 1_555 L P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 E SG CYS 26 E CYS 26 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 E SG CYS 120 E CYS 120 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc5 F SG CYS 70 F CYS 70 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc6 F SG CYS 76 F CYS 76 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc7 F SG CYS 79 F CYS 79 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc8 F SG CYS 111 F CYS 111 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
#
_chem_comp.formula           'C17 H20 N4 O6' 
_chem_comp.formula_weight    376.364 
_chem_comp.id                RBF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIBOFLAVIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVINE;VITAMIN B2' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 RBF sing 638 n n 
N1 C10 RBF doub 639 n n 
C2 O2 RBF doub 640 n n 
C2 N3 RBF sing 641 n n 
N3 C4 RBF sing 642 n n 
N3 HN3 RBF sing 643 n n 
C4 O4 RBF doub 644 n n 
C4 C4A RBF sing 645 n n 
C4A N5 RBF doub 646 n n 
C4A C10 RBF sing 647 n n 
N5 C5A RBF sing 648 n n 
C5A C6 RBF doub 649 n y 
C5A C9A RBF sing 650 n y 
C6 C7 RBF sing 651 n y 
C6 HC6 RBF sing 652 n n 
C7 C7M RBF sing 653 n n 
C7 C8 RBF doub 654 n y 
C7M HC71 RBF sing 655 n n 
C7M HC72 RBF sing 656 n n 
C7M HC73 RBF sing 657 n n 
C8 C8M RBF sing 658 n n 
C8 C9 RBF sing 659 n y 
C8M HC81 RBF sing 660 n n 
C8M HC82 RBF sing 661 n n 
C8M HC83 RBF sing 662 n n 
C9 C9A RBF doub 663 n y 
C9 HC9 RBF sing 664 n n 
C9A N10 RBF sing 665 n n 
N10 C10 RBF sing 666 n n 
N10 C1' RBF sing 667 n n 
C1' C2' RBF sing 668 n n 
C1' HC11 RBF sing 669 n n 
C1' HC12 RBF sing 670 n n 
C2' O2' RBF sing 671 n n 
C2' C3' RBF sing 672 n n 
C2' HC2' RBF sing 673 n n 
O2' HO2' RBF sing 674 n n 
C3' O3' RBF sing 675 n n 
C3' C4' RBF sing 676 n n 
C3' HC3' RBF sing 677 n n 
O3' HO3' RBF sing 678 n n 
C4' O4' RBF sing 679 n n 
C4' C5' RBF sing 680 n n 
C4' HC4' RBF sing 681 n n 
O4' HO4' RBF sing 682 n n 
C5' O5' RBF sing 683 n n 
C5' HC51 RBF sing 684 n n 
C5' HC52 RBF sing 685 n n 
O5' HO5' RBF sing 686 n n 
#
_atom_sites.entry_id                     8A1X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 FMN B 1 501 600 FMN FMN . 
H 8 RBF B 1 502 601 RBF RBF . 
I 9 LMT B 1 503 603 LMT LMT . 
J 9 LMT B 1 504 605 LMT LMT . 
K 10 3PE B 1 505 606 3PE 3PE . 
L 7 FMN C 1 1000 1000 FMN FMN . 
M 10 3PE D 1 301 602 3PE 3PE . 
N 9 LMT D 1 302 1002 LMT LMT . 
O 11 FES E 1 1001 1001 FES FES . 
P 12 FAD F 1 1501 1501 FAD FAD . 
Q 11 FES F 1 1502 1502 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RBF . . . H 8 113.723 123.148 138.66 1 60.15 ? N1 RBF 502 B 1 
HETATM 2 C C2 RBF . . . H 8 114.566 124.178 138.88 1 59.97 ? C2 RBF 502 B 1 
HETATM 3 O O2 RBF . . . H 8 114.433 125.245 138.278 1 65.78 ? O2 RBF 502 B 1 
HETATM 4 N N3 RBF . . . H 8 115.59 124.092 139.765 1 60.55 ? N3 RBF 502 B 1 
HETATM 5 C C4 RBF . . . H 8 115.83 122.951 140.487 1 65.08 ? C4 RBF 502 B 1 
HETATM 6 O O4 RBF . . . H 8 116.763 122.917 141.275 1 68.04 ? O4 RBF 502 B 1 
HETATM 7 C C4A RBF . . . H 8 114.973 121.855 140.289 1 65.7 ? C4A RBF 502 B 1 
HETATM 8 N N5 RBF . . . H 8 115.187 120.762 140.972 1 64.37 ? N5 RBF 502 B 1 
HETATM 9 C C5A RBF . . . H 8 114.34 119.709 140.758 1 61.23 ? C5A RBF 502 B 1 
HETATM 10 C C6 RBF . . . H 8 114.561 118.527 141.487 1 57.85 ? C6 RBF 502 B 1 
HETATM 11 C C7 RBF . . . H 8 113.759 117.423 141.331 1 63.58 ? C7 RBF 502 B 1 
HETATM 12 C C7M RBF . . . H 8 114.035 116.178 142.134 1 59.72 ? C7M RBF 502 B 1 
HETATM 13 C C8 RBF . . . H 8 112.681 117.477 140.412 1 64.58 ? C8 RBF 502 B 1 
HETATM 14 C C8M RBF . . . H 8 111.776 116.288 140.215 1 59.13 ? C8M RBF 502 B 1 
HETATM 15 C C9 RBF . . . H 8 112.451 118.632 139.694 1 63.44 ? C9 RBF 502 B 1 
HETATM 16 C C9A RBF . . . H 8 113.267 119.767 139.845 1 64.18 ? C9A RBF 502 B 1 
HETATM 17 N N10 RBF . . . H 8 113.072 120.953 139.133 1 62.98 ? N10 RBF 502 B 1 
HETATM 18 C C10 RBF . . . H 8 113.911 122.034 139.335 1 62.97 ? C10 RBF 502 B 1 
HETATM 19 C C1' RBF . . . H 8 111.965 121.078 138.164 1 58.58 ? C1' RBF 502 B 1 
HETATM 20 C C2' RBF . . . H 8 112.355 120.622 136.765 1 61.93 ? C2' RBF 502 B 1 
HETATM 21 O O2' RBF . . . H 8 112.656 119.23 136.755 1 58.72 ? O2' RBF 502 B 1 
HETATM 22 C C3' RBF . . . H 8 113.567 121.398 136.239 1 67.72 ? C3' RBF 502 B 1 
HETATM 23 O O3' RBF . . . H 8 113.241 122.784 136.186 1 65.17 ? O3' RBF 502 B 1 
HETATM 24 C C4' RBF . . . H 8 114.059 120.951 134.861 1 64.05 ? C4' RBF 502 B 1 
HETATM 25 O O4' RBF . . . H 8 115.354 121.503 134.618 1 64.43 ? O4' RBF 502 B 1 
HETATM 26 C C5' RBF . . . H 8 113.123 121.368 133.748 1 57.46 ? C5' RBF 502 B 1 
HETATM 27 O O5' RBF . . . H 8 111.839 120.77 133.894 1 64.1 ? O5' RBF 502 B 1 
HETATM 28 H HN3 RBF . . . H 8 116.108 124.794 139.871 1 58.7 ? HN3 RBF 502 B 1 
HETATM 29 H HC6 RBF . . . H 8 115.289 118.497 142.102 1 58.38 ? HC6 RBF 502 B 1 
HETATM 30 H HC71 RBF . . . H 8 113.814 115.393 141.607 1 58.8 ? HC71 RBF 502 B 1 
HETATM 31 H HC72 RBF . . . H 8 113.495 116.186 142.941 1 59.06 ? HC72 RBF 502 B 1 
HETATM 32 H HC73 RBF . . . H 8 114.975 116.148 142.376 1 58.62 ? HC73 RBF 502 B 1 
HETATM 33 H HC81 RBF . . . H 8 111.662 115.821 141.058 1 58.83 ? HC81 RBF 502 B 1 
HETATM 34 H HC82 RBF . . . H 8 112.17 115.684 139.564 1 59.1 ? HC82 RBF 502 B 1 
HETATM 35 H HC83 RBF . . . H 8 110.911 116.588 139.894 1 59.22 ? HC83 RBF 502 B 1 
HETATM 36 H HC9 RBF . . . H 8 111.722 118.653 139.077 1 59.42 ? HC9 RBF 502 B 1 
HETATM 37 H HC11 RBF . . . H 8 111.681 122.013 138.127 1 59.11 ? HC11 RBF 502 B 1 
HETATM 38 H HC12 RBF . . . H 8 111.203 120.554 138.474 1 58.94 ? HC12 RBF 502 B 1 
HETATM 39 H HC2' RBF . . . H 8 111.589 120.779 136.157 1 59.57 ? HC2' RBF 502 B 1 
HETATM 40 H HO2' RBF . . . H 8 113.355 119.09 137.211 1 59.52 ? HO2' RBF 502 B 1 
HETATM 41 H HC3' RBF . . . H 8 114.312 121.282 136.88 1 60.32 ? HC3' RBF 502 B 1 
HETATM 42 H HC4' RBF . . . H 8 114.128 119.95 134.851 1 59.68 ? HC4' RBF 502 B 1 
HETATM 43 H HO4' RBF . . . H 8 115.333 122.35 134.637 1 59.37 ? HO4' RBF 502 B 1 
HETATM 44 H HC51 RBF . . . H 8 113.509 121.099 132.881 1 57.8 ? HC51 RBF 502 B 1 
HETATM 45 H HC52 RBF . . . H 8 113.027 122.351 133.753 1 58.5 ? HC52 RBF 502 B 1 
HETATM 46 H HO5' RBF . . . H 8 111.355 121.048 133.264 1 59.35 ? HO5' RBF 502 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           46 
#