data_8A1X # _model_server_result.job_id A0Sn9VPgqQJLG95csBu29w _model_server_result.datetime_utc '2024-11-27 00:03:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 8A1X # _exptl.entry_id 8A1X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A1X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 I N N ? 9 J N N ? 9 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 L P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 E SG CYS 26 E CYS 26 1_555 O FE1 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 E SG CYS 120 E CYS 120 1_555 O FE2 FES . E FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 F SG CYS 70 F CYS 70 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc6 F SG CYS 76 F CYS 76 1_555 Q FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 F SG CYS 79 F CYS 79 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 F SG CYS 111 F CYS 111 1_555 Q FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 473 n n C1B O1B LMT sing 474 n n C1B O5B LMT sing 475 n n C1B H1B LMT sing 476 n n C2B C3B LMT sing 477 n n C2B O2B LMT sing 478 n n C2B H2B LMT sing 479 n n C3B C4B LMT sing 480 n n C3B O3B LMT sing 481 n n C3B H3B LMT sing 482 n n C4B C5B LMT sing 483 n n C4B O4' LMT sing 484 n n C4B H4B LMT sing 485 n n C5B C6B LMT sing 486 n n C5B O5B LMT sing 487 n n C5B H5B LMT sing 488 n n C6B O6B LMT sing 489 n n C6B "H6'2" LMT sing 490 n n C6B "H6'1" LMT sing 491 n n O1B C4' LMT sing 492 n n O2B H2O1 LMT sing 493 n n O3B H3O1 LMT sing 494 n n O4' H4O1 LMT sing 495 n n O6B H6B LMT sing 496 n n C1' C2' LMT sing 497 n n C1' O1' LMT sing 498 n n C1' O5' LMT sing 499 n n C1' H1' LMT sing 500 n n C2' C3' LMT sing 501 n n C2' O2' LMT sing 502 n n C2' H2' LMT sing 503 n n C3' C4' LMT sing 504 n n C3' O3' LMT sing 505 n n C3' H3' LMT sing 506 n n C4' C5' LMT sing 507 n n C4' H4' LMT sing 508 n n C5' C6' LMT sing 509 n n C5' O5' LMT sing 510 n n C5' H5' LMT sing 511 n n C6' O6' LMT sing 512 n n C6' H6D LMT sing 513 n n C6' H6E LMT sing 514 n n O1' C1 LMT sing 515 n n O2' H2O2 LMT sing 516 n n O3' H3O2 LMT sing 517 n n O6' H6' LMT sing 518 n n C1 C2 LMT sing 519 n n C1 H12 LMT sing 520 n n C1 H11 LMT sing 521 n n C2 C3 LMT sing 522 n n C2 H22 LMT sing 523 n n C2 H21 LMT sing 524 n n C3 C4 LMT sing 525 n n C3 H32 LMT sing 526 n n C3 H31 LMT sing 527 n n C4 C5 LMT sing 528 n n C4 H42 LMT sing 529 n n C4 H41 LMT sing 530 n n C5 C6 LMT sing 531 n n C5 H52 LMT sing 532 n n C5 H51 LMT sing 533 n n C6 C7 LMT sing 534 n n C6 H62 LMT sing 535 n n C6 H61 LMT sing 536 n n C7 C8 LMT sing 537 n n C7 H72 LMT sing 538 n n C7 H71 LMT sing 539 n n C8 C9 LMT sing 540 n n C8 H82 LMT sing 541 n n C8 H81 LMT sing 542 n n C9 C10 LMT sing 543 n n C9 H92 LMT sing 544 n n C9 H91 LMT sing 545 n n C10 C11 LMT sing 546 n n C10 H102 LMT sing 547 n n C10 H101 LMT sing 548 n n C11 C12 LMT sing 549 n n C11 H112 LMT sing 550 n n C11 H111 LMT sing 551 n n C12 H123 LMT sing 552 n n C12 H122 LMT sing 553 n n C12 H121 LMT sing 554 n n # _atom_sites.entry_id 8A1X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 501 600 FMN FMN . H 8 RBF B 1 502 601 RBF RBF . I 9 LMT B 1 503 603 LMT LMT . J 9 LMT B 1 504 605 LMT LMT . K 10 3PE B 1 505 606 3PE 3PE . L 7 FMN C 1 1000 1000 FMN FMN . M 10 3PE D 1 301 602 3PE 3PE . N 9 LMT D 1 302 1002 LMT LMT . O 11 FES E 1 1001 1001 FES FES . P 12 FAD F 1 1501 1501 FAD FAD . Q 11 FES F 1 1502 1502 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . J 9 141.704 118.599 160.397 1 68.69 ? C1B LMT 504 B 1 HETATM 2 C C2B LMT . . . J 9 141.05 119.857 159.789 1 66.56 ? C2B LMT 504 B 1 HETATM 3 C C3B LMT . . . J 9 142.015 121.051 159.889 1 66.83 ? C3B LMT 504 B 1 HETATM 4 C C4B LMT . . . J 9 143.484 120.563 159.884 1 71.19 ? C4B LMT 504 B 1 HETATM 5 C C5B LMT . . . J 9 143.552 119.256 159.071 1 70.46 ? C5B LMT 504 B 1 HETATM 6 C C6B LMT . . . J 9 145.007 118.841 158.897 1 63.43 ? C6B LMT 504 B 1 HETATM 7 O O1B LMT . . . J 9 140.771 117.564 160.533 1 68.64 ? O1B LMT 504 B 1 HETATM 8 O O2B LMT . . . J 9 140.767 119.595 158.476 1 70.69 ? O2B LMT 504 B 1 HETATM 9 O O3B LMT . . . J 9 141.729 121.841 160.971 1 65.9 ? O3B LMT 504 B 1 HETATM 10 O O4' LMT . . . J 9 144.301 121.502 159.298 1 68.32 ? O4' LMT 504 B 1 HETATM 11 O O5B LMT . . . J 9 142.81 118.197 159.644 1 75.11 ? O5B LMT 504 B 1 HETATM 12 O O6B LMT . . . J 9 145.104 117.475 158.84 1 64.39 ? O6B LMT 504 B 1 HETATM 13 C C1' LMT . . . J 9 139.351 114.412 158.248 1 67.44 ? C1' LMT 504 B 1 HETATM 14 C C2' LMT . . . J 9 140.564 115.148 157.643 1 65.19 ? C2' LMT 504 B 1 HETATM 15 C C3' LMT . . . J 9 141.235 116.079 158.69 1 65.94 ? C3' LMT 504 B 1 HETATM 16 C C4' LMT . . . J 9 140.191 116.96 159.394 1 66.45 ? C4' LMT 504 B 1 HETATM 17 C C5' LMT . . . J 9 139.124 115.974 159.906 1 71.15 ? C5' LMT 504 B 1 HETATM 18 C C6' LMT . . . J 9 138.104 116.587 160.828 1 71.06 ? C6' LMT 504 B 1 HETATM 19 O O1' LMT . . . J 9 138.642 113.78 157.269 1 66.77 ? O1' LMT 504 B 1 HETATM 20 O O2' LMT . . . J 9 141.481 114.209 157.247 1 63.85 ? O2' LMT 504 B 1 HETATM 21 O O3' LMT . . . J 9 142.177 116.862 158.095 1 65.79 ? O3' LMT 504 B 1 HETATM 22 O O5' LMT . . . J 9 138.476 115.36 158.829 1 66.53 ? O5' LMT 504 B 1 HETATM 23 O O6' LMT . . . J 9 137.14 115.631 161.01 1 74.09 ? O6' LMT 504 B 1 HETATM 24 C C1 LMT . . . J 9 138.856 112.39 157.192 1 61.37 ? C1 LMT 504 B 1 HETATM 25 C C2 LMT . . . J 9 138.48 112.023 155.789 1 61.19 ? C2 LMT 504 B 1 HETATM 26 C C3 LMT . . . J 9 137.03 112.111 155.441 1 67.75 ? C3 LMT 504 B 1 HETATM 27 C C4 LMT . . . J 9 136.334 110.93 156.067 1 66.01 ? C4 LMT 504 B 1 HETATM 28 C C5 LMT . . . J 9 134.914 110.866 155.617 1 60.85 ? C5 LMT 504 B 1 HETATM 29 C C6 LMT . . . J 9 134.21 109.667 156.163 1 65.06 ? C6 LMT 504 B 1 HETATM 30 C C7 LMT . . . J 9 132.809 109.594 155.627 1 66.81 ? C7 LMT 504 B 1 HETATM 31 C C8 LMT . . . J 9 131.991 110.67 156.253 1 66.61 ? C8 LMT 504 B 1 HETATM 32 C C9 LMT . . . J 9 130.517 110.416 156.246 1 65.9 ? C9 LMT 504 B 1 HETATM 33 C C10 LMT . . . J 9 130.069 110.358 154.812 1 66.16 ? C10 LMT 504 B 1 HETATM 34 C C11 LMT . . . J 9 128.701 110.94 154.641 1 68.02 ? C11 LMT 504 B 1 HETATM 35 C C12 LMT . . . J 9 127.696 110.268 155.516 1 65.4 ? C12 LMT 504 B 1 HETATM 36 H H1B LMT . . . J 9 142.082 118.869 161.249 1 64.29 ? H1B LMT 504 B 1 HETATM 37 H H2B LMT . . . J 9 140.276 120.067 160.334 1 63.59 ? H2B LMT 504 B 1 HETATM 38 H H3B LMT . . . J 9 141.873 121.58 159.09 1 64.11 ? H3B LMT 504 B 1 HETATM 39 H H4B LMT . . . J 9 143.744 120.349 160.794 1 65.03 ? H4B LMT 504 B 1 HETATM 40 H H5B LMT . . . J 9 143.204 119.442 158.186 1 64.49 ? H5B LMT 504 B 1 HETATM 41 H "H6'2" LMT . . . J 9 145.525 119.263 159.6 1 64.35 ? "H6'2" LMT 504 B 1 HETATM 42 H "H6'1" LMT . . . J 9 145.354 119.28 158.105 1 63.88 ? "H6'1" LMT 504 B 1 HETATM 43 H H2O1 LMT . . . J 9 140.275 120.232 158.203 1 64.43 ? H2O1 LMT 504 B 1 HETATM 44 H H3O1 LMT . . . J 9 142.464 122.173 161.238 1 65.24 ? H3O1 LMT 504 B 1 HETATM 45 H H4O1 LMT . . . J 9 143.998 122.267 159.512 1 64.57 ? H4O1 LMT 504 B 1 HETATM 46 H H6B LMT . . . J 9 144.311 117.193 158.959 1 64.59 ? H6B LMT 504 B 1 HETATM 47 H H1' LMT . . . J 9 139.679 113.811 158.935 1 64.85 ? H1' LMT 504 B 1 HETATM 48 H H2' LMT . . . J 9 140.224 115.713 156.931 1 64.23 ? H2' LMT 504 B 1 HETATM 49 H H3' LMT . . . J 9 141.595 115.495 159.376 1 65.07 ? H3' LMT 504 B 1 HETATM 50 H H4' LMT . . . J 9 139.797 117.576 158.762 1 63.69 ? H4' LMT 504 B 1 HETATM 51 H H5' LMT . . . J 9 139.612 115.331 160.442 1 65.7 ? H5' LMT 504 B 1 HETATM 52 H H6D LMT . . . J 9 137.767 117.4 160.421 1 64.87 ? H6D LMT 504 B 1 HETATM 53 H H6E LMT . . . J 9 138.539 116.918 161.629 1 64.49 ? H6E LMT 504 B 1 HETATM 54 H H2O2 LMT . . . J 9 142.24 114.591 157.271 1 63.96 ? H2O2 LMT 504 B 1 HETATM 55 H H6' LMT . . . J 9 137.159 115.149 160.311 1 65.19 ? H6' LMT 504 B 1 HETATM 56 H H12 LMT . . . J 9 138.347 111.868 157.832 1 64.18 ? H12 LMT 504 B 1 HETATM 57 H H11 LMT . . . J 9 139.779 112.17 157.395 1 64.04 ? H11 LMT 504 B 1 HETATM 58 H H22 LMT . . . J 9 138.78 111.116 155.621 1 63.97 ? H22 LMT 504 B 1 HETATM 59 H H21 LMT . . . J 9 138.983 112.583 155.178 1 63.78 ? H21 LMT 504 B 1 HETATM 60 H H32 LMT . . . J 9 136.885 112.116 154.482 1 64.53 ? H32 LMT 504 B 1 HETATM 61 H H31 LMT . . . J 9 136.635 112.935 155.766 1 64.49 ? H31 LMT 504 B 1 HETATM 62 H H42 LMT . . . J 9 136.39 110.987 157.033 1 64.58 ? H42 LMT 504 B 1 HETATM 63 H H41 LMT . . . J 9 136.795 110.109 155.837 1 64.9 ? H41 LMT 504 B 1 HETATM 64 H H52 LMT . . . J 9 134.879 110.856 154.648 1 63.52 ? H52 LMT 504 B 1 HETATM 65 H H51 LMT . . . J 9 134.457 111.677 155.888 1 63.15 ? H51 LMT 504 B 1 HETATM 66 H H62 LMT . . . J 9 134.202 109.687 157.133 1 64.22 ? H62 LMT 504 B 1 HETATM 67 H H61 LMT . . . J 9 134.696 108.857 155.942 1 64.82 ? H61 LMT 504 B 1 HETATM 68 H H72 LMT . . . J 9 132.426 108.721 155.805 1 64.66 ? H72 LMT 504 B 1 HETATM 69 H H71 LMT . . . J 9 132.814 109.675 154.66 1 64.55 ? H71 LMT 504 B 1 HETATM 70 H H82 LMT . . . J 9 132.169 111.509 155.802 1 64.09 ? H82 LMT 504 B 1 HETATM 71 H H81 LMT . . . J 9 132.282 110.811 157.166 1 64.38 ? H81 LMT 504 B 1 HETATM 72 H H92 LMT . . . J 9 130.035 111.105 156.728 1 64.76 ? H92 LMT 504 B 1 HETATM 73 H H91 LMT . . . J 9 130.306 109.592 156.711 1 64.33 ? H91 LMT 504 B 1 HETATM 74 H H102 LMT . . . J 9 130.083 109.44 154.498 1 64.44 ? H102 LMT 504 B 1 HETATM 75 H H101 LMT . . . J 9 130.707 110.822 154.249 1 64.4 ? H101 LMT 504 B 1 HETATM 76 H H112 LMT . . . J 9 128.439 110.858 153.711 1 64.57 ? H112 LMT 504 B 1 HETATM 77 H H111 LMT . . . J 9 128.727 111.89 154.835 1 64.35 ? H111 LMT 504 B 1 HETATM 78 H H123 LMT . . . J 9 126.79 110.498 155.257 1 64.44 ? H123 LMT 504 B 1 HETATM 79 H H122 LMT . . . J 9 127.8 110.523 156.446 1 64.21 ? H122 LMT 504 B 1 HETATM 80 H H121 LMT . . . J 9 127.783 109.304 155.455 1 64.79 ? H121 LMT 504 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 80 #