data_8A1Y
#
_model_server_result.job_id            nLx4SsLfCLOchyh8yoP5Bg 
_model_server_result.datetime_utc      '2024-11-23 04:05:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1002}' 
#
_entry.id    8A1Y 
#
_exptl.entry_id    8A1Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A1Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 J N N 
? 10 L N N 
? 10 Q N N 
? 10 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale2 C OG1 THR 225 C THR 225 1_555 O P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 P FE2 FES . D FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 P FE1 FES . D FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 P FE1 FES . D FES 1001 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 P FE2 FES . D FES 1001 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 F SG CYS 70 F CYS 70 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 F SG CYS 76 F CYS 76 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 F SG CYS 79 F CYS 79 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc8 F SG CYS 111 F CYS 111 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 514 n n 
C1B O1B LMT sing 515 n n 
C1B O5B LMT sing 516 n n 
C1B H1B LMT sing 517 n n 
C2B C3B LMT sing 518 n n 
C2B O2B LMT sing 519 n n 
C2B H2B LMT sing 520 n n 
C3B C4B LMT sing 521 n n 
C3B O3B LMT sing 522 n n 
C3B H3B LMT sing 523 n n 
C4B C5B LMT sing 524 n n 
C4B O4' LMT sing 525 n n 
C4B H4B LMT sing 526 n n 
C5B C6B LMT sing 527 n n 
C5B O5B LMT sing 528 n n 
C5B H5B LMT sing 529 n n 
C6B O6B LMT sing 530 n n 
C6B "H6'2" LMT sing 531 n n 
C6B "H6'1" LMT sing 532 n n 
O1B C4' LMT sing 533 n n 
O2B H2O1 LMT sing 534 n n 
O3B H3O1 LMT sing 535 n n 
O4' H4O1 LMT sing 536 n n 
O6B H6B LMT sing 537 n n 
C1' C2' LMT sing 538 n n 
C1' O1' LMT sing 539 n n 
C1' O5' LMT sing 540 n n 
C1' H1' LMT sing 541 n n 
C2' C3' LMT sing 542 n n 
C2' O2' LMT sing 543 n n 
C2' H2' LMT sing 544 n n 
C3' C4' LMT sing 545 n n 
C3' O3' LMT sing 546 n n 
C3' H3' LMT sing 547 n n 
C4' C5' LMT sing 548 n n 
C4' H4' LMT sing 549 n n 
C5' C6' LMT sing 550 n n 
C5' O5' LMT sing 551 n n 
C5' H5' LMT sing 552 n n 
C6' O6' LMT sing 553 n n 
C6' H6D LMT sing 554 n n 
C6' H6E LMT sing 555 n n 
O1' C1 LMT sing 556 n n 
O2' H2O2 LMT sing 557 n n 
O3' H3O2 LMT sing 558 n n 
O6' H6' LMT sing 559 n n 
C1 C2 LMT sing 560 n n 
C1 H12 LMT sing 561 n n 
C1 H11 LMT sing 562 n n 
C2 C3 LMT sing 563 n n 
C2 H22 LMT sing 564 n n 
C2 H21 LMT sing 565 n n 
C3 C4 LMT sing 566 n n 
C3 H32 LMT sing 567 n n 
C3 H31 LMT sing 568 n n 
C4 C5 LMT sing 569 n n 
C4 H42 LMT sing 570 n n 
C4 H41 LMT sing 571 n n 
C5 C6 LMT sing 572 n n 
C5 H52 LMT sing 573 n n 
C5 H51 LMT sing 574 n n 
C6 C7 LMT sing 575 n n 
C6 H62 LMT sing 576 n n 
C6 H61 LMT sing 577 n n 
C7 C8 LMT sing 578 n n 
C7 H72 LMT sing 579 n n 
C7 H71 LMT sing 580 n n 
C8 C9 LMT sing 581 n n 
C8 H82 LMT sing 582 n n 
C8 H81 LMT sing 583 n n 
C9 C10 LMT sing 584 n n 
C9 H92 LMT sing 585 n n 
C9 H91 LMT sing 586 n n 
C10 C11 LMT sing 587 n n 
C10 H102 LMT sing 588 n n 
C10 H101 LMT sing 589 n n 
C11 C12 LMT sing 590 n n 
C11 H112 LMT sing 591 n n 
C11 H111 LMT sing 592 n n 
C12 H123 LMT sing 593 n n 
C12 H122 LMT sing 594 n n 
C12 H121 LMT sing 595 n n 
#
_atom_sites.entry_id                     8A1Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 FMN B 1 600 600 FMN FMN . 
H 8 RBF B 1 601 601 RBF RBF . 
I 9 3PE B 1 602 602 3PE 3PE . 
J 10 LMT B 1 603 603 LMT LMT . 
K 9 3PE B 1 604 604 3PE 3PE . 
L 10 LMT B 1 605 605 LMT LMT . 
M 9 3PE B 1 606 606 3PE 3PE . 
N 11 HQO B 1 607 607 HQO HQO . 
O 7 FMN C 1 1000 1000 FMN FMN . 
P 12 FES D 1 1001 1001 FES FES . 
Q 10 LMT D 1 1002 1002 LMT LMT . 
R 10 LMT E 1 201 201 LMT LMT . 
S 13 FAD F 1 1501 1501 FAD FAD . 
T 12 FES F 1 1502 1502 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . Q 10 117.62 154.586 142.43 1 104.46 ? C1B LMT 1002 D 1 
HETATM 2 C C2B LMT . . . Q 10 118.781 154.192 143.359 1 103.64 ? C2B LMT 1002 D 1 
HETATM 3 C C3B LMT . . . Q 10 118.276 153.322 144.522 1 108.03 ? C3B LMT 1002 D 1 
HETATM 4 C C4B LMT . . . Q 10 116.755 153.516 144.737 1 107.48 ? C4B LMT 1002 D 1 
HETATM 5 C C5B LMT . . . Q 10 116.395 154.983 144.43 1 108.14 ? C5B LMT 1002 D 1 
HETATM 6 C C6B LMT . . . Q 10 117.107 155.924 145.399 1 106.17 ? C6B LMT 1002 D 1 
HETATM 7 O O1B LMT . . . Q 10 117.043 153.435 141.908 1 104.71 ? O1B LMT 1002 D 1 
HETATM 8 O O2B LMT . . . Q 10 119.688 153.501 142.602 1 101.36 ? O2B LMT 1002 D 1 
HETATM 9 O O3B LMT . . . Q 10 119.001 153.538 145.666 1 107.93 ? O3B LMT 1002 D 1 
HETATM 10 O O4' LMT . . . Q 10 116.038 152.692 143.899 1 103.19 ? O4' LMT 1002 D 1 
HETATM 11 O O5B LMT . . . Q 10 116.658 155.354 143.093 1 103.34 ? O5B LMT 1002 D 1 
HETATM 12 O O6B LMT . . . Q 10 117.895 156.808 144.708 1 99.77 ? O6B LMT 1002 D 1 
HETATM 13 C C1' LMT . . . Q 10 117.297 151.231 138.422 1 103.08 ? C1' LMT 1002 D 1 
HETATM 14 C C2' LMT . . . Q 10 118.537 152.084 138.747 1 101.57 ? C2' LMT 1002 D 1 
HETATM 15 C C3' LMT . . . Q 10 118.489 152.589 140.211 1 102.82 ? C3' LMT 1002 D 1 
HETATM 16 C C4' LMT . . . Q 10 117.138 153.245 140.516 1 104.09 ? C4' LMT 1002 D 1 
HETATM 17 C C5' LMT . . . Q 10 116.082 152.202 140.111 1 103.19 ? C5' LMT 1002 D 1 
HETATM 18 C C6' LMT . . . Q 10 114.681 152.561 140.519 1 103.25 ? C6' LMT 1002 D 1 
HETATM 19 O O1' LMT . . . Q 10 117.249 150.959 137.086 1 104.46 ? O1' LMT 1002 D 1 
HETATM 20 O O2' LMT . . . Q 10 119.648 151.298 138.599 1 102.95 ? O2' LMT 1002 D 1 
HETATM 21 O O3' LMT . . . Q 10 119.497 153.472 140.45 1 108.33 ? O3' LMT 1002 D 1 
HETATM 22 O O5' LMT . . . Q 10 116.131 151.974 138.73 1 104.6 ? O5' LMT 1002 D 1 
HETATM 23 O O6' LMT . . . Q 10 114.804 153.294 141.669 1 103.75 ? O6' LMT 1002 D 1 
HETATM 24 C C1 LMT . . . Q 10 117.982 149.822 136.692 1 101.36 ? C1 LMT 1002 D 1 
HETATM 25 C C2 LMT . . . Q 10 117.467 149.488 135.325 1 103.65 ? C2 LMT 1002 D 1 
HETATM 26 C C3 LMT . . . Q 10 117.859 148.157 134.774 1 101.01 ? C3 LMT 1002 D 1 
HETATM 27 C C4 LMT . . . Q 10 119.296 148.249 134.339 1 96.55 ? C4 LMT 1002 D 1 
HETATM 28 C C5 LMT . . . Q 10 119.906 146.892 134.264 1 94.14 ? C5 LMT 1002 D 1 
HETATM 29 C C6 LMT . . . Q 10 119.412 146.117 133.092 1 98.8 ? C6 LMT 1002 D 1 
HETATM 30 C C7 LMT . . . Q 10 120.435 145.094 132.699 1 100.98 ? C7 LMT 1002 D 1 
HETATM 31 C C8 LMT . . . Q 10 119.886 144.265 131.591 1 105.01 ? C8 LMT 1002 D 1 
HETATM 32 C C9 LMT . . . Q 10 120.91 143.487 130.827 1 104.54 ? C9 LMT 1002 D 1 
HETATM 33 C C10 LMT . . . Q 10 121.405 142.384 131.722 1 108.09 ? C10 LMT 1002 D 1 
HETATM 34 C C11 LMT . . . Q 10 122.337 141.46 131.004 1 105.56 ? C11 LMT 1002 D 1 
HETATM 35 C C12 LMT . . . Q 10 121.618 140.591 130.031 1 99.99 ? C12 LMT 1002 D 1 
HETATM 36 H H1B LMT . . . Q 10 117.986 155.179 141.757 1 100.92 ? H1B LMT 1002 D 1 
HETATM 37 H H2B LMT . . . Q 10 119.128 155.009 143.744 1 100.36 ? H2B LMT 1002 D 1 
HETATM 38 H H3B LMT . . . Q 10 118.422 152.401 144.252 1 100.87 ? H3B LMT 1002 D 1 
HETATM 39 H H4B LMT . . . Q 10 116.557 153.366 145.675 1 100.64 ? H4B LMT 1002 D 1 
HETATM 40 H H5B LMT . . . Q 10 115.444 155.085 144.593 1 100.99 ? H5B LMT 1002 D 1 
HETATM 41 H "H6'2" LMT . . . Q 10 117.567 155.389 146.063 1 100.97 ? "H6'2" LMT 1002 D 1 
HETATM 42 H "H6'1" LMT . . . Q 10 116.433 156.365 145.94 1 101.37 ? "H6'1" LMT 1002 D 1 
HETATM 43 H H1' LMT . . . Q 10 117.329 150.436 138.977 1 100.23 ? H1' LMT 1002 D 1 
HETATM 44 H H2' LMT . . . Q 10 118.506 152.862 138.17 1 100.38 ? H2' LMT 1002 D 1 
HETATM 45 H H3' LMT . . . Q 10 118.529 151.796 140.768 1 99.52 ? H3' LMT 1002 D 1 
HETATM 46 H H4' LMT . . . Q 10 117.035 154.055 139.993 1 100.98 ? H4' LMT 1002 D 1 
HETATM 47 H H5' LMT . . . Q 10 116.31 151.404 140.613 1 99.67 ? H5' LMT 1002 D 1 
HETATM 48 H H6D LMT . . . Q 10 114.172 151.743 140.636 1 99.96 ? H6D LMT 1002 D 1 
HETATM 49 H H6E LMT . . . Q 10 114.222 152.992 139.781 1 100.46 ? H6E LMT 1002 D 1 
HETATM 50 H H12 LMT . . . Q 10 117.894 149.059 137.285 1 99.85 ? H12 LMT 1002 D 1 
HETATM 51 H H11 LMT . . . Q 10 118.933 150.007 136.69 1 99.41 ? H11 LMT 1002 D 1 
HETATM 52 H H22 LMT . . . Q 10 117.77 150.174 134.709 1 100.33 ? H22 LMT 1002 D 1 
HETATM 53 H H21 LMT . . . Q 10 116.499 149.551 135.334 1 101.07 ? H21 LMT 1002 D 1 
HETATM 54 H H32 LMT . . . Q 10 117.299 147.892 134.028 1 100.13 ? H32 LMT 1002 D 1 
HETATM 55 H H31 LMT . . . Q 10 117.759 147.455 135.434 1 100.52 ? H31 LMT 1002 D 1 
HETATM 56 H H42 LMT . . . Q 10 119.793 148.818 134.946 1 99.65 ? H42 LMT 1002 D 1 
HETATM 57 H H41 LMT . . . Q 10 119.357 148.692 133.478 1 99.71 ? H41 LMT 1002 D 1 
HETATM 58 H H52 LMT . . . Q 10 119.722 146.406 135.083 1 98.69 ? H52 LMT 1002 D 1 
HETATM 59 H H51 LMT . . . Q 10 120.872 146.977 134.224 1 98.95 ? H51 LMT 1002 D 1 
HETATM 60 H H62 LMT . . . Q 10 119.217 146.706 132.346 1 100.23 ? H62 LMT 1002 D 1 
HETATM 61 H H61 LMT . . . Q 10 118.566 145.688 133.295 1 100.14 ? H61 LMT 1002 D 1 
HETATM 62 H H72 LMT . . . Q 10 120.669 144.542 133.461 1 99.19 ? H72 LMT 1002 D 1 
HETATM 63 H H71 LMT . . . Q 10 121.262 145.528 132.436 1 99.6 ? H71 LMT 1002 D 1 
HETATM 64 H H82 LMT . . . Q 10 119.399 144.836 130.976 1 100.83 ? H82 LMT 1002 D 1 
HETATM 65 H H81 LMT . . . Q 10 119.22 143.656 131.943 1 100.8 ? H81 LMT 1002 D 1 
HETATM 66 H H92 LMT . . . Q 10 121.644 144.05 130.537 1 100.28 ? H92 LMT 1002 D 1 
HETATM 67 H H91 LMT . . . Q 10 120.532 143.13 130.01 1 100.34 ? H91 LMT 1002 D 1 
HETATM 68 H H102 LMT . . . Q 10 120.656 141.886 132.079 1 100.83 ? H102 LMT 1002 D 1 
HETATM 69 H H101 LMT . . . Q 10 121.842 142.766 132.499 1 100.04 ? H101 LMT 1002 D 1 
HETATM 70 H H112 LMT . . . Q 10 122.803 140.914 131.657 1 99.93 ? H112 LMT 1002 D 1 
HETATM 71 H H111 LMT . . . Q 10 123.016 141.975 130.547 1 99.89 ? H111 LMT 1002 D 1 
HETATM 72 H H123 LMT . . . Q 10 122.187 139.877 129.703 1 98.86 ? H123 LMT 1002 D 1 
HETATM 73 H H122 LMT . . . Q 10 121.315 141.091 129.259 1 99.23 ? H122 LMT 1002 D 1 
HETATM 74 H H121 LMT . . . Q 10 120.844 140.182 130.448 1 99.44 ? H121 LMT 1002 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           74 
#