data_8A1Y
#
_model_server_result.job_id            Ef667kEml5GLYrVWWOnTyg 
_model_server_result.datetime_utc      '2024-11-23 04:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":201}' 
#
_entry.id    8A1Y 
#
_exptl.entry_id    8A1Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A1Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 J N N 
? 10 L N N 
? 10 Q N N 
? 10 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale2 C OG1 THR 225 C THR 225 1_555 O P FMN . C FMN 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 P FE2 FES . D FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 P FE1 FES . D FES 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 P FE1 FES . D FES 1001 1_555 E SG CYS 26 E CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 P FE2 FES . D FES 1001 1_555 E SG CYS 120 E CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc5 F SG CYS 70 F CYS 70 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 F SG CYS 76 F CYS 76 1_555 T FE1 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc7 F SG CYS 79 F CYS 79 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc8 F SG CYS 111 F CYS 111 1_555 T FE2 FES . F FES 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 514 n n 
C1B O1B LMT sing 515 n n 
C1B O5B LMT sing 516 n n 
C1B H1B LMT sing 517 n n 
C2B C3B LMT sing 518 n n 
C2B O2B LMT sing 519 n n 
C2B H2B LMT sing 520 n n 
C3B C4B LMT sing 521 n n 
C3B O3B LMT sing 522 n n 
C3B H3B LMT sing 523 n n 
C4B C5B LMT sing 524 n n 
C4B O4' LMT sing 525 n n 
C4B H4B LMT sing 526 n n 
C5B C6B LMT sing 527 n n 
C5B O5B LMT sing 528 n n 
C5B H5B LMT sing 529 n n 
C6B O6B LMT sing 530 n n 
C6B "H6'2" LMT sing 531 n n 
C6B "H6'1" LMT sing 532 n n 
O1B C4' LMT sing 533 n n 
O2B H2O1 LMT sing 534 n n 
O3B H3O1 LMT sing 535 n n 
O4' H4O1 LMT sing 536 n n 
O6B H6B LMT sing 537 n n 
C1' C2' LMT sing 538 n n 
C1' O1' LMT sing 539 n n 
C1' O5' LMT sing 540 n n 
C1' H1' LMT sing 541 n n 
C2' C3' LMT sing 542 n n 
C2' O2' LMT sing 543 n n 
C2' H2' LMT sing 544 n n 
C3' C4' LMT sing 545 n n 
C3' O3' LMT sing 546 n n 
C3' H3' LMT sing 547 n n 
C4' C5' LMT sing 548 n n 
C4' H4' LMT sing 549 n n 
C5' C6' LMT sing 550 n n 
C5' O5' LMT sing 551 n n 
C5' H5' LMT sing 552 n n 
C6' O6' LMT sing 553 n n 
C6' H6D LMT sing 554 n n 
C6' H6E LMT sing 555 n n 
O1' C1 LMT sing 556 n n 
O2' H2O2 LMT sing 557 n n 
O3' H3O2 LMT sing 558 n n 
O6' H6' LMT sing 559 n n 
C1 C2 LMT sing 560 n n 
C1 H12 LMT sing 561 n n 
C1 H11 LMT sing 562 n n 
C2 C3 LMT sing 563 n n 
C2 H22 LMT sing 564 n n 
C2 H21 LMT sing 565 n n 
C3 C4 LMT sing 566 n n 
C3 H32 LMT sing 567 n n 
C3 H31 LMT sing 568 n n 
C4 C5 LMT sing 569 n n 
C4 H42 LMT sing 570 n n 
C4 H41 LMT sing 571 n n 
C5 C6 LMT sing 572 n n 
C5 H52 LMT sing 573 n n 
C5 H51 LMT sing 574 n n 
C6 C7 LMT sing 575 n n 
C6 H62 LMT sing 576 n n 
C6 H61 LMT sing 577 n n 
C7 C8 LMT sing 578 n n 
C7 H72 LMT sing 579 n n 
C7 H71 LMT sing 580 n n 
C8 C9 LMT sing 581 n n 
C8 H82 LMT sing 582 n n 
C8 H81 LMT sing 583 n n 
C9 C10 LMT sing 584 n n 
C9 H92 LMT sing 585 n n 
C9 H91 LMT sing 586 n n 
C10 C11 LMT sing 587 n n 
C10 H102 LMT sing 588 n n 
C10 H101 LMT sing 589 n n 
C11 C12 LMT sing 590 n n 
C11 H112 LMT sing 591 n n 
C11 H111 LMT sing 592 n n 
C12 H123 LMT sing 593 n n 
C12 H122 LMT sing 594 n n 
C12 H121 LMT sing 595 n n 
#
_atom_sites.entry_id                     8A1Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 FMN B 1 600 600 FMN FMN . 
H 8 RBF B 1 601 601 RBF RBF . 
I 9 3PE B 1 602 602 3PE 3PE . 
J 10 LMT B 1 603 603 LMT LMT . 
K 9 3PE B 1 604 604 3PE 3PE . 
L 10 LMT B 1 605 605 LMT LMT . 
M 9 3PE B 1 606 606 3PE 3PE . 
N 11 HQO B 1 607 607 HQO HQO . 
O 7 FMN C 1 1000 1000 FMN FMN . 
P 12 FES D 1 1001 1001 FES FES . 
Q 10 LMT D 1 1002 1002 LMT LMT . 
R 10 LMT E 1 201 201 LMT LMT . 
S 13 FAD F 1 1501 1501 FAD FAD . 
T 12 FES F 1 1502 1502 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . R 10 152.582 130.091 143.739 1 128.72 ? C1B LMT 201 E 1 
HETATM 2 C C2B LMT . . . R 10 153.912 129.314 143.79 1 125.57 ? C2B LMT 201 E 1 
HETATM 3 C C3B LMT . . . R 10 155.112 130.271 143.929 1 126.28 ? C3B LMT 201 E 1 
HETATM 4 C C4B LMT . . . R 10 155.039 131.401 142.876 1 129.47 ? C4B LMT 201 E 1 
HETATM 5 C C5B LMT . . . R 10 153.651 132.046 142.989 1 128.55 ? C5B LMT 201 E 1 
HETATM 6 C C6B LMT . . . R 10 153.528 133.197 141.997 1 123.35 ? C6B LMT 201 E 1 
HETATM 7 O O1B LMT . . . R 10 152.305 130.612 144.998 1 130.01 ? O1B LMT 201 E 1 
HETATM 8 O O2B LMT . . . R 10 153.84 128.47 144.868 1 123.84 ? O2B LMT 201 E 1 
HETATM 9 O O3B LMT . . . R 10 156.304 129.593 143.886 1 123.24 ? O3B LMT 201 E 1 
HETATM 10 O O4' LMT . . . R 10 156.005 132.352 143.116 1 126.94 ? O4' LMT 201 E 1 
HETATM 11 O O5B LMT . . . R 10 152.622 131.112 142.788 1 132.48 ? O5B LMT 201 E 1 
HETATM 12 O O6B LMT . . . R 10 153.41 132.71 140.721 1 121.38 ? O6B LMT 201 E 1 
HETATM 13 C C1' LMT . . . R 10 149.103 131.651 147.417 1 125.72 ? C1' LMT 201 E 1 
HETATM 14 C C2' LMT . . . R 10 149.342 130.135 147.253 1 126.54 ? C2' LMT 201 E 1 
HETATM 15 C C3' LMT . . . R 10 150.739 129.857 146.637 1 129.28 ? C3' LMT 201 E 1 
HETATM 16 C C4' LMT . . . R 10 150.949 130.701 145.371 1 130.41 ? C4' LMT 201 E 1 
HETATM 17 C C5' LMT . . . R 10 150.663 132.151 145.803 1 128.26 ? C5' LMT 201 E 1 
HETATM 18 C C6' LMT . . . R 10 151.009 133.185 144.767 1 123.11 ? C6' LMT 201 E 1 
HETATM 19 O O1' LMT . . . R 10 147.81 131.882 147.811 1 124.8 ? O1' LMT 201 E 1 
HETATM 20 O O2' LMT . . . R 10 149.289 129.558 148.495 1 122.85 ? O2' LMT 201 E 1 
HETATM 21 O O3' LMT . . . R 10 150.881 128.534 146.341 1 125.02 ? O3' LMT 201 E 1 
HETATM 22 O O5' LMT . . . R 10 149.317 132.287 146.169 1 127.56 ? O5' LMT 201 E 1 
HETATM 23 O O6' LMT . . . R 10 152.125 133.825 145.235 1 125.83 ? O6' LMT 201 E 1 
HETATM 24 C C1 LMT . . . R 10 146.913 132.433 146.866 1 119.21 ? C1 LMT 201 E 1 
HETATM 25 C C2 LMT . . . R 10 146.383 131.256 146.108 1 120.49 ? C2 LMT 201 E 1 
HETATM 26 C C3 LMT . . . R 10 146.893 131.073 144.718 1 123.72 ? C3 LMT 201 E 1 
HETATM 27 C C4 LMT . . . R 10 146.285 129.805 144.179 1 123.41 ? C4 LMT 201 E 1 
HETATM 28 C C5 LMT . . . R 10 147.121 128.627 144.542 1 119.71 ? C5 LMT 201 E 1 
HETATM 29 C C6 LMT . . . R 10 146.712 127.401 143.797 1 120.21 ? C6 LMT 201 E 1 
HETATM 30 C C7 LMT . . . R 10 145.403 126.899 144.328 1 122.34 ? C7 LMT 201 E 1 
HETATM 31 C C8 LMT . . . R 10 144.383 126.938 143.244 1 122.52 ? C8 LMT 201 E 1 
HETATM 32 C C9 LMT . . . R 10 144.49 125.818 142.263 1 121.4 ? C9 LMT 201 E 1 
HETATM 33 C C10 LMT . . . R 10 143.391 126 141.254 1 119.22 ? C10 LMT 201 E 1 
HETATM 34 C C11 LMT . . . R 10 143.016 124.702 140.616 1 123.22 ? C11 LMT 201 E 1 
HETATM 35 C C12 LMT . . . R 10 141.846 124.856 139.705 1 118.17 ? C12 LMT 201 E 1 
HETATM 36 H H1B LMT . . . R 10 151.908 129.474 143.412 1 122.98 ? H1B LMT 201 E 1 
HETATM 37 H H2B LMT . . . R 10 154.008 128.862 142.937 1 122.43 ? H2B LMT 201 E 1 
HETATM 38 H H3B LMT . . . R 10 155.035 130.675 144.807 1 122.59 ? H3B LMT 201 E 1 
HETATM 39 H H4B LMT . . . R 10 155.101 131.006 141.992 1 122.98 ? H4B LMT 201 E 1 
HETATM 40 H H5B LMT . . . R 10 153.57 132.423 143.878 1 122.8 ? H5B LMT 201 E 1 
HETATM 41 H "H6'2" LMT . . . R 10 154.273 133.8 142.143 1 122.74 ? "H6'2" LMT 201 E 1 
HETATM 42 H "H6'1" LMT . . . R 10 152.774 133.746 142.263 1 121.71 ? "H6'1" LMT 201 E 1 
HETATM 43 H H1' LMT . . . R 10 149.755 131.979 148.055 1 122.41 ? H1' LMT 201 E 1 
HETATM 44 H H2' LMT . . . R 10 148.681 129.811 146.623 1 122.74 ? H2' LMT 201 E 1 
HETATM 45 H H3' LMT . . . R 10 151.386 130.181 147.282 1 122.94 ? H3' LMT 201 E 1 
HETATM 46 H H4' LMT . . . R 10 150.325 130.423 144.683 1 123.18 ? H4' LMT 201 E 1 
HETATM 47 H H5' LMT . . . R 10 151.255 132.315 146.553 1 123.12 ? H5' LMT 201 E 1 
HETATM 48 H H6D LMT . . . R 10 150.248 133.774 144.651 1 122.54 ? H6D LMT 201 E 1 
HETATM 49 H H6E LMT . . . R 10 151.087 132.766 143.895 1 121.91 ? H6E LMT 201 E 1 
HETATM 50 H H12 LMT . . . R 10 147.29 133.088 146.265 1 121.96 ? H12 LMT 201 E 1 
HETATM 51 H H11 LMT . . . R 10 146.207 132.924 147.315 1 121.35 ? H11 LMT 201 E 1 
HETATM 52 H H22 LMT . . . R 10 145.417 131.333 146.069 1 121.17 ? H22 LMT 201 E 1 
HETATM 53 H H21 LMT . . . R 10 146.561 130.452 146.619 1 121.62 ? H21 LMT 201 E 1 
HETATM 54 H H32 LMT . . . R 10 147.86 131.024 144.686 1 122.62 ? H32 LMT 201 E 1 
HETATM 55 H H31 LMT . . . R 10 146.653 131.821 144.149 1 122.41 ? H31 LMT 201 E 1 
HETATM 56 H H42 LMT . . . R 10 146.177 129.871 143.218 1 122.55 ? H42 LMT 201 E 1 
HETATM 57 H H41 LMT . . . R 10 145.385 129.695 144.522 1 121.58 ? H41 LMT 201 E 1 
HETATM 58 H H52 LMT . . . R 10 147.066 128.468 145.497 1 121.72 ? H52 LMT 201 E 1 
HETATM 59 H H51 LMT . . . R 10 148.054 128.827 144.365 1 122.1 ? H51 LMT 201 E 1 
HETATM 60 H H62 LMT . . . R 10 147.392 126.713 143.869 1 122.35 ? H62 LMT 201 E 1 
HETATM 61 H H61 LMT . . . R 10 146.647 127.581 142.847 1 121.98 ? H61 LMT 201 E 1 
HETATM 62 H H72 LMT . . . R 10 145.121 127.434 145.083 1 121.75 ? H72 LMT 201 E 1 
HETATM 63 H H71 LMT . . . R 10 145.505 126.001 144.679 1 122.07 ? H71 LMT 201 E 1 
HETATM 64 H H82 LMT . . . R 10 144.443 127.784 142.772 1 121.81 ? H82 LMT 201 E 1 
HETATM 65 H H81 LMT . . . R 10 143.497 126.934 143.637 1 121.49 ? H81 LMT 201 E 1 
HETATM 66 H H92 LMT . . . R 10 144.419 124.954 142.696 1 121.92 ? H92 LMT 201 E 1 
HETATM 67 H H91 LMT . . . R 10 145.36 125.814 141.834 1 122.1 ? H91 LMT 201 E 1 
HETATM 68 H H102 LMT . . . R 10 143.665 126.638 140.577 1 121.44 ? H102 LMT 201 E 1 
HETATM 69 H H101 LMT . . . R 10 142.618 126.404 141.679 1 121.24 ? H101 LMT 201 E 1 
HETATM 70 H H112 LMT . . . R 10 142.814 124.056 141.311 1 122.08 ? H112 LMT 201 E 1 
HETATM 71 H H111 LMT . . . R 10 143.775 124.35 140.126 1 122.67 ? H111 LMT 201 E 1 
HETATM 72 H H123 LMT . . . R 10 141.637 124.025 139.251 1 120.81 ? H123 LMT 201 E 1 
HETATM 73 H H122 LMT . . . R 10 142.008 125.525 139.022 1 120.88 ? H122 LMT 201 E 1 
HETATM 74 H H121 LMT . . . R 10 141.059 125.122 140.206 1 120.77 ? H121 LMT 201 E 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           74 
#