data_8A21
#
_model_server_result.job_id            L6Trf5pbd_DjZEWwO3Ffbg 
_model_server_result.datetime_utc      '2025-07-31 18:05:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8A21 
#
_exptl.entry_id    8A21 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-PHENYL-1H-IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8A21 
_cell.length_a            65.57 
_cell.length_b            109.74 
_cell.length_c            133.97 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A21 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.57 109.74 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 191 A ASP 187 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc2 A O ASP 193 A ASP 189 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc3 A OD1 ASP 347 A ASP 343 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc4 A OD2 ASP 347 A ASP 343 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 G O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc7 B MG MG . A MG 501 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
#
_chem_comp.formula           'C9 H8 N2' 
_chem_comp.formula_weight    144.173 
_chem_comp.id                PIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-PHENYL-1H-IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PIM sing 273 n y 
N1 C5 PIM sing 274 n y 
N1 HN1 PIM sing 275 n n 
C2 N3 PIM doub 276 n y 
C2 H2 PIM sing 277 n n 
N3 C4 PIM sing 278 n y 
C4 C5 PIM doub 279 n y 
C4 H4 PIM sing 280 n n 
C5 C6 PIM sing 281 n y 
C6 C7 PIM doub 282 n y 
C6 C11 PIM sing 283 n y 
C7 C8 PIM sing 284 n y 
C7 H7 PIM sing 285 n n 
C8 C9 PIM doub 286 n y 
C8 H8 PIM sing 287 n n 
C9 C10 PIM sing 288 n y 
C9 H9 PIM sing 289 n n 
C10 C11 PIM doub 290 n y 
C10 H10 PIM sing 291 n n 
C11 H11 PIM sing 292 n n 
#
_atom_sites.entry_id                     8A21 
_atom_sites.fract_transf_matrix[1][1]    0.015251 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 412 MG MG . 
C 3 PIM A 1 502 1 PIM PIM . 
D 3 PIM A 1 503 2 PIM PIM . 
E 4 CL A 1 504 2 CL CL . 
F 5 GOL A 1 505 1 GOL LIG . 
G 6 HOH A 1 601 41 HOH HOH . 
G 6 HOH A 2 602 128 HOH HOH . 
G 6 HOH A 3 603 56 HOH HOH . 
G 6 HOH A 4 604 29 HOH HOH . 
G 6 HOH A 5 605 94 HOH HOH . 
G 6 HOH A 6 606 13 HOH HOH . 
G 6 HOH A 7 607 204 HOH HOH . 
G 6 HOH A 8 608 33 HOH HOH . 
G 6 HOH A 9 609 44 HOH HOH . 
G 6 HOH A 10 610 54 HOH HOH . 
G 6 HOH A 11 611 112 HOH HOH . 
G 6 HOH A 12 612 136 HOH HOH . 
G 6 HOH A 13 613 179 HOH HOH . 
G 6 HOH A 14 614 24 HOH HOH . 
G 6 HOH A 15 615 63 HOH HOH . 
G 6 HOH A 16 616 8 HOH HOH . 
G 6 HOH A 17 617 5 HOH HOH . 
G 6 HOH A 18 618 30 HOH HOH . 
G 6 HOH A 19 619 71 HOH HOH . 
G 6 HOH A 20 620 62 HOH HOH . 
G 6 HOH A 21 621 4 HOH HOH . 
G 6 HOH A 22 622 153 HOH HOH . 
G 6 HOH A 23 623 37 HOH HOH . 
G 6 HOH A 24 624 47 HOH HOH . 
G 6 HOH A 25 625 114 HOH HOH . 
G 6 HOH A 26 626 23 HOH HOH . 
G 6 HOH A 27 627 90 HOH HOH . 
G 6 HOH A 28 628 9 HOH HOH . 
G 6 HOH A 29 629 88 HOH HOH . 
G 6 HOH A 30 630 84 HOH HOH . 
G 6 HOH A 31 631 49 HOH HOH . 
G 6 HOH A 32 632 75 HOH HOH . 
G 6 HOH A 33 633 19 HOH HOH . 
G 6 HOH A 34 634 7 HOH HOH . 
G 6 HOH A 35 635 36 HOH HOH . 
G 6 HOH A 36 636 110 HOH HOH . 
G 6 HOH A 37 637 77 HOH HOH . 
G 6 HOH A 38 638 70 HOH HOH . 
G 6 HOH A 39 639 102 HOH HOH . 
G 6 HOH A 40 640 53 HOH HOH . 
G 6 HOH A 41 641 92 HOH HOH . 
G 6 HOH A 42 642 85 HOH HOH . 
G 6 HOH A 43 643 34 HOH HOH . 
G 6 HOH A 44 644 21 HOH HOH . 
G 6 HOH A 45 645 28 HOH HOH . 
G 6 HOH A 46 646 32 HOH HOH . 
G 6 HOH A 47 647 45 HOH HOH . 
G 6 HOH A 48 648 50 HOH HOH . 
G 6 HOH A 49 649 115 HOH HOH . 
G 6 HOH A 50 650 16 HOH HOH . 
G 6 HOH A 51 651 202 HOH HOH . 
G 6 HOH A 52 652 117 HOH HOH . 
G 6 HOH A 53 653 96 HOH HOH . 
G 6 HOH A 54 654 169 HOH HOH . 
G 6 HOH A 55 655 27 HOH HOH . 
G 6 HOH A 56 656 20 HOH HOH . 
G 6 HOH A 57 657 145 HOH HOH . 
G 6 HOH A 58 658 10 HOH HOH . 
G 6 HOH A 59 659 123 HOH HOH . 
G 6 HOH A 60 660 122 HOH HOH . 
G 6 HOH A 61 661 48 HOH HOH . 
G 6 HOH A 62 662 61 HOH HOH . 
G 6 HOH A 63 663 149 HOH HOH . 
G 6 HOH A 64 664 81 HOH HOH . 
G 6 HOH A 65 665 25 HOH HOH . 
G 6 HOH A 66 666 72 HOH HOH . 
G 6 HOH A 67 667 159 HOH HOH . 
G 6 HOH A 68 668 83 HOH HOH . 
G 6 HOH A 69 669 6 HOH HOH . 
G 6 HOH A 70 670 22 HOH HOH . 
G 6 HOH A 71 671 137 HOH HOH . 
G 6 HOH A 72 672 80 HOH HOH . 
G 6 HOH A 73 673 134 HOH HOH . 
G 6 HOH A 74 674 107 HOH HOH . 
G 6 HOH A 75 675 57 HOH HOH . 
G 6 HOH A 76 676 65 HOH HOH . 
G 6 HOH A 77 677 76 HOH HOH . 
G 6 HOH A 78 678 15 HOH HOH . 
G 6 HOH A 79 679 213 HOH HOH . 
G 6 HOH A 80 680 113 HOH HOH . 
G 6 HOH A 81 681 176 HOH HOH . 
G 6 HOH A 82 682 166 HOH HOH . 
G 6 HOH A 83 683 132 HOH HOH . 
G 6 HOH A 84 684 116 HOH HOH . 
G 6 HOH A 85 685 133 HOH HOH . 
G 6 HOH A 86 686 14 HOH HOH . 
G 6 HOH A 87 687 97 HOH HOH . 
G 6 HOH A 88 688 89 HOH HOH . 
G 6 HOH A 89 689 64 HOH HOH . 
G 6 HOH A 90 690 103 HOH HOH . 
G 6 HOH A 91 691 91 HOH HOH . 
G 6 HOH A 92 692 17 HOH HOH . 
G 6 HOH A 93 693 68 HOH HOH . 
G 6 HOH A 94 694 74 HOH HOH . 
G 6 HOH A 95 695 104 HOH HOH . 
G 6 HOH A 96 696 150 HOH HOH . 
G 6 HOH A 97 697 109 HOH HOH . 
G 6 HOH A 98 698 58 HOH HOH . 
G 6 HOH A 99 699 55 HOH HOH . 
G 6 HOH A 100 700 26 HOH HOH . 
G 6 HOH A 101 701 82 HOH HOH . 
G 6 HOH A 102 702 38 HOH HOH . 
G 6 HOH A 103 703 87 HOH HOH . 
G 6 HOH A 104 704 42 HOH HOH . 
G 6 HOH A 105 705 3 HOH HOH . 
G 6 HOH A 106 706 154 HOH HOH . 
G 6 HOH A 107 707 164 HOH HOH . 
G 6 HOH A 108 708 120 HOH HOH . 
G 6 HOH A 109 709 141 HOH HOH . 
G 6 HOH A 110 710 11 HOH HOH . 
G 6 HOH A 111 711 18 HOH HOH . 
G 6 HOH A 112 712 135 HOH HOH . 
G 6 HOH A 113 713 187 HOH HOH . 
G 6 HOH A 114 714 193 HOH HOH . 
G 6 HOH A 115 715 78 HOH HOH . 
G 6 HOH A 116 716 143 HOH HOH . 
G 6 HOH A 117 717 105 HOH HOH . 
G 6 HOH A 118 718 40 HOH HOH . 
G 6 HOH A 119 719 43 HOH HOH . 
G 6 HOH A 120 720 146 HOH HOH . 
G 6 HOH A 121 721 139 HOH HOH . 
G 6 HOH A 122 722 130 HOH HOH . 
G 6 HOH A 123 723 173 HOH HOH . 
G 6 HOH A 124 724 131 HOH HOH . 
G 6 HOH A 125 725 60 HOH HOH . 
G 6 HOH A 126 726 51 HOH HOH . 
G 6 HOH A 127 727 212 HOH HOH . 
G 6 HOH A 128 728 12 HOH HOH . 
G 6 HOH A 129 729 73 HOH HOH . 
G 6 HOH A 130 730 205 HOH HOH . 
G 6 HOH A 131 731 39 HOH HOH . 
G 6 HOH A 132 732 160 HOH HOH . 
G 6 HOH A 133 733 156 HOH HOH . 
G 6 HOH A 134 734 121 HOH HOH . 
G 6 HOH A 135 735 95 HOH HOH . 
G 6 HOH A 136 736 125 HOH HOH . 
G 6 HOH A 137 737 59 HOH HOH . 
G 6 HOH A 138 738 31 HOH HOH . 
G 6 HOH A 139 739 93 HOH HOH . 
G 6 HOH A 140 740 79 HOH HOH . 
G 6 HOH A 141 741 191 HOH HOH . 
G 6 HOH A 142 742 124 HOH HOH . 
G 6 HOH A 143 743 66 HOH HOH . 
G 6 HOH A 144 744 86 HOH HOH . 
G 6 HOH A 145 745 138 HOH HOH . 
G 6 HOH A 146 746 118 HOH HOH . 
G 6 HOH A 147 747 46 HOH HOH . 
G 6 HOH A 148 748 190 HOH HOH . 
G 6 HOH A 149 749 182 HOH HOH . 
G 6 HOH A 150 750 100 HOH HOH . 
G 6 HOH A 151 751 67 HOH HOH . 
G 6 HOH A 152 752 207 HOH HOH . 
G 6 HOH A 153 753 170 HOH HOH . 
G 6 HOH A 154 754 152 HOH HOH . 
G 6 HOH A 155 755 157 HOH HOH . 
G 6 HOH A 156 756 126 HOH HOH . 
G 6 HOH A 157 757 129 HOH HOH . 
G 6 HOH A 158 758 99 HOH HOH . 
G 6 HOH A 159 759 198 HOH HOH . 
G 6 HOH A 160 760 151 HOH HOH . 
G 6 HOH A 161 761 140 HOH HOH . 
G 6 HOH A 162 762 101 HOH HOH . 
G 6 HOH A 163 763 165 HOH HOH . 
G 6 HOH A 164 764 111 HOH HOH . 
G 6 HOH A 165 765 194 HOH HOH . 
G 6 HOH A 166 766 127 HOH HOH . 
G 6 HOH A 167 767 158 HOH HOH . 
G 6 HOH A 168 768 168 HOH HOH . 
G 6 HOH A 169 769 174 HOH HOH . 
G 6 HOH A 170 770 171 HOH HOH . 
G 6 HOH A 171 771 197 HOH HOH . 
G 6 HOH A 172 772 209 HOH HOH . 
G 6 HOH A 173 773 195 HOH HOH . 
G 6 HOH A 174 774 189 HOH HOH . 
G 6 HOH A 175 775 208 HOH HOH . 
G 6 HOH A 176 776 200 HOH HOH . 
G 6 HOH A 177 777 199 HOH HOH . 
G 6 HOH A 178 778 106 HOH HOH . 
G 6 HOH A 179 779 142 HOH HOH . 
G 6 HOH A 180 780 210 HOH HOH . 
G 6 HOH A 181 781 162 HOH HOH . 
G 6 HOH A 182 782 180 HOH HOH . 
G 6 HOH A 183 783 188 HOH HOH . 
G 6 HOH A 184 784 147 HOH HOH . 
G 6 HOH A 185 785 148 HOH HOH . 
G 6 HOH A 186 786 161 HOH HOH . 
G 6 HOH A 187 787 196 HOH HOH . 
G 6 HOH A 188 788 215 HOH HOH . 
G 6 HOH A 189 789 155 HOH HOH . 
G 6 HOH A 190 790 206 HOH HOH . 
G 6 HOH A 191 791 108 HOH HOH . 
G 6 HOH A 192 792 201 HOH HOH . 
G 6 HOH A 193 793 186 HOH HOH . 
G 6 HOH A 194 794 177 HOH HOH . 
G 6 HOH A 195 795 144 HOH HOH . 
G 6 HOH A 196 796 98 HOH HOH . 
G 6 HOH A 197 797 216 HOH HOH . 
G 6 HOH A 198 798 192 HOH HOH . 
G 6 HOH A 199 799 185 HOH HOH . 
G 6 HOH A 200 800 163 HOH HOH . 
G 6 HOH A 201 801 184 HOH HOH . 
G 6 HOH A 202 802 211 HOH HOH . 
G 6 HOH A 203 803 167 HOH HOH . 
G 6 HOH A 204 804 35 HOH HOH . 
G 6 HOH A 205 805 183 HOH HOH . 
G 6 HOH A 206 806 172 HOH HOH . 
G 6 HOH A 207 807 214 HOH HOH . 
G 6 HOH A 208 808 203 HOH HOH . 
G 6 HOH A 209 809 178 HOH HOH . 
G 6 HOH A 210 810 181 HOH HOH . 
G 6 HOH A 211 811 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PIM . . . C 3 17.049 30.427 8.766 0.68 38.76 ? N1 PIM 502 A 1 
HETATM 2 C C2 PIM . . . C 3 15.911 31.123 8.697 0.68 38.17 ? C2 PIM 502 A 1 
HETATM 3 N N3 PIM . . . C 3 15.081 30.644 9.634 0.68 41.87 ? N3 PIM 502 A 1 
HETATM 4 C C4 PIM . . . C 3 15.68 29.67 10.275 0.68 36.89 ? C4 PIM 502 A 1 
HETATM 5 C C5 PIM . . . C 3 16.906 29.536 9.714 0.68 39.03 ? C5 PIM 502 A 1 
HETATM 6 C C6 PIM . . . C 3 17.874 28.651 10.105 0.68 36.68 ? C6 PIM 502 A 1 
HETATM 7 C C7 PIM . . . C 3 17.62 27.727 11.096 0.68 41.93 ? C7 PIM 502 A 1 
HETATM 8 C C8 PIM . . . C 3 18.614 26.854 11.516 0.68 43.37 ? C8 PIM 502 A 1 
HETATM 9 C C9 PIM . . . C 3 19.853 26.921 10.917 0.68 38.3 ? C9 PIM 502 A 1 
HETATM 10 C C10 PIM . . . C 3 20.08 27.863 9.935 0.68 38.62 ? C10 PIM 502 A 1 
HETATM 11 C C11 PIM . . . C 3 19.103 28.735 9.518 0.68 37.76 ? C11 PIM 502 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           491 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           11 
#