data_8A21 # _model_server_result.job_id S-6y1rRm0W78WVcB2eAkvA _model_server_result.datetime_utc '2025-07-31 18:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 8A21 # _exptl.entry_id 8A21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A21 _cell.length_a 65.57 _cell.length_b 109.74 _cell.length_c 133.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.57 109.74 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 191 A ASP 187 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc2 A O ASP 193 A ASP 189 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc3 A OD1 ASP 347 A ASP 343 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 A OD2 ASP 347 A ASP 343 1_555 B MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc5 B MG MG . A MG 501 1_555 G O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 B MG MG . A MG 501 1_555 G O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 B MG MG . A MG 501 1_555 G O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8A21 _atom_sites.fract_transf_matrix[1][1] 0.015251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 412 MG MG . C 3 PIM A 1 502 1 PIM PIM . D 3 PIM A 1 503 2 PIM PIM . E 4 CL A 1 504 2 CL CL . F 5 GOL A 1 505 1 GOL LIG . G 6 HOH A 1 601 41 HOH HOH . G 6 HOH A 2 602 128 HOH HOH . G 6 HOH A 3 603 56 HOH HOH . G 6 HOH A 4 604 29 HOH HOH . G 6 HOH A 5 605 94 HOH HOH . G 6 HOH A 6 606 13 HOH HOH . G 6 HOH A 7 607 204 HOH HOH . G 6 HOH A 8 608 33 HOH HOH . G 6 HOH A 9 609 44 HOH HOH . G 6 HOH A 10 610 54 HOH HOH . G 6 HOH A 11 611 112 HOH HOH . G 6 HOH A 12 612 136 HOH HOH . G 6 HOH A 13 613 179 HOH HOH . G 6 HOH A 14 614 24 HOH HOH . G 6 HOH A 15 615 63 HOH HOH . G 6 HOH A 16 616 8 HOH HOH . G 6 HOH A 17 617 5 HOH HOH . G 6 HOH A 18 618 30 HOH HOH . G 6 HOH A 19 619 71 HOH HOH . G 6 HOH A 20 620 62 HOH HOH . G 6 HOH A 21 621 4 HOH HOH . G 6 HOH A 22 622 153 HOH HOH . G 6 HOH A 23 623 37 HOH HOH . G 6 HOH A 24 624 47 HOH HOH . G 6 HOH A 25 625 114 HOH HOH . G 6 HOH A 26 626 23 HOH HOH . G 6 HOH A 27 627 90 HOH HOH . G 6 HOH A 28 628 9 HOH HOH . G 6 HOH A 29 629 88 HOH HOH . G 6 HOH A 30 630 84 HOH HOH . G 6 HOH A 31 631 49 HOH HOH . G 6 HOH A 32 632 75 HOH HOH . G 6 HOH A 33 633 19 HOH HOH . G 6 HOH A 34 634 7 HOH HOH . G 6 HOH A 35 635 36 HOH HOH . G 6 HOH A 36 636 110 HOH HOH . G 6 HOH A 37 637 77 HOH HOH . G 6 HOH A 38 638 70 HOH HOH . G 6 HOH A 39 639 102 HOH HOH . G 6 HOH A 40 640 53 HOH HOH . G 6 HOH A 41 641 92 HOH HOH . G 6 HOH A 42 642 85 HOH HOH . G 6 HOH A 43 643 34 HOH HOH . G 6 HOH A 44 644 21 HOH HOH . G 6 HOH A 45 645 28 HOH HOH . G 6 HOH A 46 646 32 HOH HOH . G 6 HOH A 47 647 45 HOH HOH . G 6 HOH A 48 648 50 HOH HOH . G 6 HOH A 49 649 115 HOH HOH . G 6 HOH A 50 650 16 HOH HOH . G 6 HOH A 51 651 202 HOH HOH . G 6 HOH A 52 652 117 HOH HOH . G 6 HOH A 53 653 96 HOH HOH . G 6 HOH A 54 654 169 HOH HOH . G 6 HOH A 55 655 27 HOH HOH . G 6 HOH A 56 656 20 HOH HOH . G 6 HOH A 57 657 145 HOH HOH . G 6 HOH A 58 658 10 HOH HOH . G 6 HOH A 59 659 123 HOH HOH . G 6 HOH A 60 660 122 HOH HOH . G 6 HOH A 61 661 48 HOH HOH . G 6 HOH A 62 662 61 HOH HOH . G 6 HOH A 63 663 149 HOH HOH . G 6 HOH A 64 664 81 HOH HOH . G 6 HOH A 65 665 25 HOH HOH . G 6 HOH A 66 666 72 HOH HOH . G 6 HOH A 67 667 159 HOH HOH . G 6 HOH A 68 668 83 HOH HOH . G 6 HOH A 69 669 6 HOH HOH . G 6 HOH A 70 670 22 HOH HOH . G 6 HOH A 71 671 137 HOH HOH . G 6 HOH A 72 672 80 HOH HOH . G 6 HOH A 73 673 134 HOH HOH . G 6 HOH A 74 674 107 HOH HOH . G 6 HOH A 75 675 57 HOH HOH . G 6 HOH A 76 676 65 HOH HOH . G 6 HOH A 77 677 76 HOH HOH . G 6 HOH A 78 678 15 HOH HOH . G 6 HOH A 79 679 213 HOH HOH . G 6 HOH A 80 680 113 HOH HOH . G 6 HOH A 81 681 176 HOH HOH . G 6 HOH A 82 682 166 HOH HOH . G 6 HOH A 83 683 132 HOH HOH . G 6 HOH A 84 684 116 HOH HOH . G 6 HOH A 85 685 133 HOH HOH . G 6 HOH A 86 686 14 HOH HOH . G 6 HOH A 87 687 97 HOH HOH . G 6 HOH A 88 688 89 HOH HOH . G 6 HOH A 89 689 64 HOH HOH . G 6 HOH A 90 690 103 HOH HOH . G 6 HOH A 91 691 91 HOH HOH . G 6 HOH A 92 692 17 HOH HOH . G 6 HOH A 93 693 68 HOH HOH . G 6 HOH A 94 694 74 HOH HOH . G 6 HOH A 95 695 104 HOH HOH . G 6 HOH A 96 696 150 HOH HOH . G 6 HOH A 97 697 109 HOH HOH . G 6 HOH A 98 698 58 HOH HOH . G 6 HOH A 99 699 55 HOH HOH . G 6 HOH A 100 700 26 HOH HOH . G 6 HOH A 101 701 82 HOH HOH . G 6 HOH A 102 702 38 HOH HOH . G 6 HOH A 103 703 87 HOH HOH . G 6 HOH A 104 704 42 HOH HOH . G 6 HOH A 105 705 3 HOH HOH . G 6 HOH A 106 706 154 HOH HOH . G 6 HOH A 107 707 164 HOH HOH . G 6 HOH A 108 708 120 HOH HOH . G 6 HOH A 109 709 141 HOH HOH . G 6 HOH A 110 710 11 HOH HOH . G 6 HOH A 111 711 18 HOH HOH . G 6 HOH A 112 712 135 HOH HOH . G 6 HOH A 113 713 187 HOH HOH . G 6 HOH A 114 714 193 HOH HOH . G 6 HOH A 115 715 78 HOH HOH . G 6 HOH A 116 716 143 HOH HOH . G 6 HOH A 117 717 105 HOH HOH . G 6 HOH A 118 718 40 HOH HOH . G 6 HOH A 119 719 43 HOH HOH . G 6 HOH A 120 720 146 HOH HOH . G 6 HOH A 121 721 139 HOH HOH . G 6 HOH A 122 722 130 HOH HOH . G 6 HOH A 123 723 173 HOH HOH . G 6 HOH A 124 724 131 HOH HOH . G 6 HOH A 125 725 60 HOH HOH . G 6 HOH A 126 726 51 HOH HOH . G 6 HOH A 127 727 212 HOH HOH . G 6 HOH A 128 728 12 HOH HOH . G 6 HOH A 129 729 73 HOH HOH . G 6 HOH A 130 730 205 HOH HOH . G 6 HOH A 131 731 39 HOH HOH . G 6 HOH A 132 732 160 HOH HOH . G 6 HOH A 133 733 156 HOH HOH . G 6 HOH A 134 734 121 HOH HOH . G 6 HOH A 135 735 95 HOH HOH . G 6 HOH A 136 736 125 HOH HOH . G 6 HOH A 137 737 59 HOH HOH . G 6 HOH A 138 738 31 HOH HOH . G 6 HOH A 139 739 93 HOH HOH . G 6 HOH A 140 740 79 HOH HOH . G 6 HOH A 141 741 191 HOH HOH . G 6 HOH A 142 742 124 HOH HOH . G 6 HOH A 143 743 66 HOH HOH . G 6 HOH A 144 744 86 HOH HOH . G 6 HOH A 145 745 138 HOH HOH . G 6 HOH A 146 746 118 HOH HOH . G 6 HOH A 147 747 46 HOH HOH . G 6 HOH A 148 748 190 HOH HOH . G 6 HOH A 149 749 182 HOH HOH . G 6 HOH A 150 750 100 HOH HOH . G 6 HOH A 151 751 67 HOH HOH . G 6 HOH A 152 752 207 HOH HOH . G 6 HOH A 153 753 170 HOH HOH . G 6 HOH A 154 754 152 HOH HOH . G 6 HOH A 155 755 157 HOH HOH . G 6 HOH A 156 756 126 HOH HOH . G 6 HOH A 157 757 129 HOH HOH . G 6 HOH A 158 758 99 HOH HOH . G 6 HOH A 159 759 198 HOH HOH . G 6 HOH A 160 760 151 HOH HOH . G 6 HOH A 161 761 140 HOH HOH . G 6 HOH A 162 762 101 HOH HOH . G 6 HOH A 163 763 165 HOH HOH . G 6 HOH A 164 764 111 HOH HOH . G 6 HOH A 165 765 194 HOH HOH . G 6 HOH A 166 766 127 HOH HOH . G 6 HOH A 167 767 158 HOH HOH . G 6 HOH A 168 768 168 HOH HOH . G 6 HOH A 169 769 174 HOH HOH . G 6 HOH A 170 770 171 HOH HOH . G 6 HOH A 171 771 197 HOH HOH . G 6 HOH A 172 772 209 HOH HOH . G 6 HOH A 173 773 195 HOH HOH . G 6 HOH A 174 774 189 HOH HOH . G 6 HOH A 175 775 208 HOH HOH . G 6 HOH A 176 776 200 HOH HOH . G 6 HOH A 177 777 199 HOH HOH . G 6 HOH A 178 778 106 HOH HOH . G 6 HOH A 179 779 142 HOH HOH . G 6 HOH A 180 780 210 HOH HOH . G 6 HOH A 181 781 162 HOH HOH . G 6 HOH A 182 782 180 HOH HOH . G 6 HOH A 183 783 188 HOH HOH . G 6 HOH A 184 784 147 HOH HOH . G 6 HOH A 185 785 148 HOH HOH . G 6 HOH A 186 786 161 HOH HOH . G 6 HOH A 187 787 196 HOH HOH . G 6 HOH A 188 788 215 HOH HOH . G 6 HOH A 189 789 155 HOH HOH . G 6 HOH A 190 790 206 HOH HOH . G 6 HOH A 191 791 108 HOH HOH . G 6 HOH A 192 792 201 HOH HOH . G 6 HOH A 193 793 186 HOH HOH . G 6 HOH A 194 794 177 HOH HOH . G 6 HOH A 195 795 144 HOH HOH . G 6 HOH A 196 796 98 HOH HOH . G 6 HOH A 197 797 216 HOH HOH . G 6 HOH A 198 798 192 HOH HOH . G 6 HOH A 199 799 185 HOH HOH . G 6 HOH A 200 800 163 HOH HOH . G 6 HOH A 201 801 184 HOH HOH . G 6 HOH A 202 802 211 HOH HOH . G 6 HOH A 203 803 167 HOH HOH . G 6 HOH A 204 804 35 HOH HOH . G 6 HOH A 205 805 183 HOH HOH . G 6 HOH A 206 806 172 HOH HOH . G 6 HOH A 207 807 214 HOH HOH . G 6 HOH A 208 808 203 HOH HOH . G 6 HOH A 209 809 178 HOH HOH . G 6 HOH A 210 810 181 HOH HOH . G 6 HOH A 211 811 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 9.165 37.5 -3.425 0.79 48.79 ? C1 GOL 505 A 1 HETATM 2 O O1 GOL . . . F 5 9.109 37.688 -4.807 0.79 44.85 ? O1 GOL 505 A 1 HETATM 3 C C2 GOL . . . F 5 7.744 37.554 -2.866 0.79 53.55 ? C2 GOL 505 A 1 HETATM 4 O O2 GOL . . . F 5 7.192 38.795 -3.201 0.79 56.53 ? O2 GOL 505 A 1 HETATM 5 C C3 GOL . . . F 5 7.739 37.376 -1.347 0.79 44.23 ? C3 GOL 505 A 1 HETATM 6 O O3 GOL . . . F 5 6.461 36.936 -0.974 0.79 41.22 ? O3 GOL 505 A 1 HETATM 7 H H11 GOL . . . F 5 9.559 36.636 -3.23 0.79 58.42 ? H11 GOL 505 A 1 HETATM 8 H H12 GOL . . . F 5 9.7 38.202 -3.022 0.79 58.42 ? H12 GOL 505 A 1 HETATM 9 H HO1 GOL . . . F 5 9.851 37.454 -5.153 0.79 53.69 ? HO1 GOL 505 A 1 HETATM 10 H H2 GOL . . . F 5 7.187 36.869 -3.269 0.79 64.13 ? H2 GOL 505 A 1 HETATM 11 H HO2 GOL . . . F 5 6.595 38.675 -3.796 0.79 67.7 ? HO2 GOL 505 A 1 HETATM 12 H H31 GOL . . . F 5 7.935 38.222 -0.915 0.79 52.94 ? H31 GOL 505 A 1 HETATM 13 H H32 GOL . . . F 5 8.402 36.716 -1.09 0.79 52.94 ? H32 GOL 505 A 1 HETATM 14 H HO3 GOL . . . F 5 6.521 36.418 -0.302 0.79 49.33 ? HO3 GOL 505 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #