data_8A23 # _model_server_result.job_id u68b0LU5UqzrUGmEwYGkAA _model_server_result.datetime_utc '2025-07-17 11:50:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8A23 # _exptl.entry_id 8A23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5R)-2-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-5-(hydroxymethyl)oxolane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A23 _cell.length_a 85.142 _cell.length_b 85.142 _cell.length_c 162.874 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 66 B CYS 74 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 B SG CYS 69 B CYS 77 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 B NE2 HIS 75 B HIS 83 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 B SG CYS 82 B CYS 90 1_555 E ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 B SG CYS 109 B CYS 117 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 B SG CYS 112 B CYS 120 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc7 B SG CYS 120 B CYS 128 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 B SG CYS 122 B CYS 130 1_555 F ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? # _chem_comp.formula 'C22 H19 N5 O4' _chem_comp.formula_weight 417.417 _chem_comp.id KW6 _chem_comp.mon_nstd_flag n _chem_comp.name (2R,3R,4S,5R)-2-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-5-(hydroxymethyl)oxolane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 KW6 doub 184 n y C13 C14 KW6 sing 185 n y C12 C11 KW6 sing 186 n y C14 C9 KW6 doub 187 n y C11 C10 KW6 doub 188 n y C9 C10 KW6 sing 189 n y C9 N3 KW6 sing 190 n y C10 C15 KW6 sing 191 n y N3 C8 KW6 doub 192 n y C15 C7 KW6 doub 193 n y C8 C7 KW6 sing 194 n y C7 C6 KW6 sing 195 n n N C KW6 sing 196 n n C6 C5 KW6 trip 197 n n C N1 KW6 doub 198 n y C C3 KW6 sing 199 n y N1 C1 KW6 sing 200 n y C5 C4 KW6 sing 201 n n C3 C4 KW6 sing 202 n y C3 C2 KW6 doub 203 n y C4 C16 KW6 doub 204 n y C1 N2 KW6 doub 205 n y C2 N2 KW6 sing 206 n y C2 N4 KW6 sing 207 n y C16 N4 KW6 sing 208 n y N4 C17 KW6 sing 209 n n O C18 KW6 sing 210 n n C18 C17 KW6 sing 211 n n C18 C19 KW6 sing 212 n n C17 O2 KW6 sing 213 n n O2 C20 KW6 sing 214 n n C19 O1 KW6 sing 215 n n C19 C20 KW6 sing 216 n n C20 C21 KW6 sing 217 n n O3 C21 KW6 sing 218 n n C8 H1 KW6 sing 219 n n C12 H2 KW6 sing 220 n n C11 H3 KW6 sing 221 n n C14 H4 KW6 sing 222 n n C15 H5 KW6 sing 223 n n C17 H6 KW6 sing 224 n n C20 H7 KW6 sing 225 n n C21 H8 KW6 sing 226 n n C21 H9 KW6 sing 227 n n C1 H10 KW6 sing 228 n n N H11 KW6 sing 229 n n N H12 KW6 sing 230 n n O H13 KW6 sing 231 n n C13 H14 KW6 sing 232 n n C16 H15 KW6 sing 233 n n C18 H16 KW6 sing 234 n n C19 H17 KW6 sing 235 n n O1 H18 KW6 sing 236 n n O3 H19 KW6 sing 237 n n # _atom_sites.entry_id 8A23 _atom_sites.fract_transf_matrix[1][1] 0.011745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 KW6 A 1 301 1 KW6 383 . D 4 GOL A 1 302 4 GOL GOL . E 5 ZN B 1 201 2 ZN ZN . F 5 ZN B 1 202 3 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 KW6 . . . C 3 44.63 0.037 -39.678 1 80.53 ? C8 KW6 301 A 1 HETATM 2 C C7 KW6 . . . C 3 43.684 0.988 -39.284 1 75.98 ? C7 KW6 301 A 1 HETATM 3 C C12 KW6 . . . C 3 46.269 4.154 -41.841 1 81.94 ? C12 KW6 301 A 1 HETATM 4 C C11 KW6 . . . C 3 45.197 3.908 -41.036 1 86 ? C11 KW6 301 A 1 HETATM 5 C C10 KW6 . . . C 3 44.957 2.61 -40.534 1 83.94 ? C10 KW6 301 A 1 HETATM 6 C C9 KW6 . . . C 3 45.851 1.576 -40.874 1 81.65 ? C9 KW6 301 A 1 HETATM 7 C C14 KW6 . . . C 3 46.955 1.869 -41.705 1 79.98 ? C14 KW6 301 A 1 HETATM 8 C C15 KW6 . . . C 3 43.86 2.281 -39.718 1 76.88 ? C15 KW6 301 A 1 HETATM 9 C C17 KW6 . . . C 3 39.758 -2.505 -34.145 1 55.94 ? C17 KW6 301 A 1 HETATM 10 C C20 KW6 . . . C 3 40.629 -2.818 -32.039 1 54.83 ? C20 KW6 301 A 1 HETATM 11 C C21 KW6 . . . C 3 41.8 -2.253 -31.267 1 57.27 ? C21 KW6 301 A 1 HETATM 12 C C6 KW6 . . . C 3 42.561 0.616 -38.473 1 70.72 ? C6 KW6 301 A 1 HETATM 13 C C4 KW6 . . . C 3 40.67 -0.364 -36.94 1 55.87 ? C4 KW6 301 A 1 HETATM 14 C C3 KW6 . . . C 3 39.257 -0.468 -37.142 1 55.58 ? C3 KW6 301 A 1 HETATM 15 C C2 KW6 . . . C 3 38.76 -1.231 -36.074 1 59.13 ? C2 KW6 301 A 1 HETATM 16 C C1 KW6 . . . C 3 36.685 -1.091 -36.834 1 61.18 ? C1 KW6 301 A 1 HETATM 17 N N KW6 . . . C 3 38.608 0.686 -39.159 1 51.1 ? N KW6 301 A 1 HETATM 18 C C KW6 . . . C 3 38.299 -0.03 -38.089 1 54.69 ? C KW6 301 A 1 HETATM 19 O O KW6 . . . C 3 40.089 -4.655 -35.09 1 53.88 ? O KW6 301 A 1 HETATM 20 C C13 KW6 . . . C 3 47.146 3.137 -42.175 1 79.09 ? C13 KW6 301 A 1 HETATM 21 C C16 KW6 . . . C 3 40.958 -1.036 -35.782 1 56.38 ? C16 KW6 301 A 1 HETATM 22 C C18 KW6 . . . C 3 40.722 -3.662 -34.297 1 58.54 ? C18 KW6 301 A 1 HETATM 23 C C19 KW6 . . . C 3 40.91 -4.095 -32.845 1 60.66 ? C19 KW6 301 A 1 HETATM 24 C C5 KW6 . . . C 3 41.663 0.213 -37.795 1 64.64 ? C5 KW6 301 A 1 HETATM 25 N N1 KW6 . . . C 3 37.007 -0.364 -37.9 1 54.23 ? N1 KW6 301 A 1 HETATM 26 N N2 KW6 . . . C 3 37.482 -1.564 -35.876 1 61.12 ? N2 KW6 301 A 1 HETATM 27 N N3 KW6 . . . C 3 45.678 0.289 -40.434 1 79.81 ? N3 KW6 301 A 1 HETATM 28 N N4 KW6 . . . C 3 39.813 -1.586 -35.264 1 60.36 ? N4 KW6 301 A 1 HETATM 29 O O1 KW6 . . . C 3 39.977 -5.118 -32.553 1 56.65 ? O1 KW6 301 A 1 HETATM 30 O O2 KW6 . . . C 3 40.173 -1.83 -32.984 1 56.17 ? O2 KW6 301 A 1 HETATM 31 O O3 KW6 . . . C 3 43.021 -2.916 -31.559 1 65.18 ? O3 KW6 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 571 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #