data_8A2O # _model_server_result.job_id cU10-1V8jnvuqO_LFPTSTQ _model_server_result.datetime_utc '2024-11-13 04:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2407}' # _entry.id 8A2O # _exptl.entry_id 8A2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A2O _cell.length_a 40.531 _cell.length_b 182.311 _cell.length_c 144.267 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 72 A CYS 71 1_555 A SG CYS 160 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 75 A CYS 74 1_555 A SG CYS 147 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 78 A CYS 77 1_555 A SG CYS 167 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 356 A CYS 259 1_555 A SG CYS 359 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A OD1 ASP 53 A ASP 52 1_555 K NA NA . A NA 2410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc2 A OG SER 92 A SER 91 1_555 K NA NA . A NA 2410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.022 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 8A2O _atom_sites.fract_transf_matrix[1][1] 0.024672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005485 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TEP A 1 2401 2401 TEP TEP . C 3 CLR A 1 2402 2403 CLR CLR . D 3 CLR A 1 2403 2404 CLR CLR . E 3 CLR A 1 2404 2405 CLR CLR . F 4 OLA A 1 2405 2605 OLA OLA . G 5 OLC A 1 2406 2729 OLC OLC . H 5 OLC A 1 2407 3101 OLC OLC . I 4 OLA A 1 2408 3201 OLA OLA . J 4 OLA A 1 2409 3301 OLA OLA . K 6 NA A 1 2410 5000 NA NA . L 7 HOH A 1 3801 3801 HOH HOH . L 7 HOH A 2 3802 3809 HOH HOH . L 7 HOH A 3 3803 3815 HOH HOH . L 7 HOH A 4 3804 3804 HOH HOH . L 7 HOH A 5 3805 3810 HOH HOH . L 7 HOH A 6 3806 3811 HOH HOH . L 7 HOH A 7 3807 3805 HOH HOH . L 7 HOH A 8 3808 3821 HOH HOH . L 7 HOH A 9 3809 3819 HOH HOH . L 7 HOH A 10 3810 3817 HOH HOH . L 7 HOH A 11 3811 3816 HOH HOH . L 7 HOH A 12 3812 3814 HOH HOH . L 7 HOH A 13 3813 3820 HOH HOH . L 7 HOH A 14 3814 3807 HOH HOH . L 7 HOH A 15 3815 3806 HOH HOH . L 7 HOH A 16 3816 3802 HOH HOH . L 7 HOH A 17 3817 3818 HOH HOH . L 7 HOH A 18 3818 3812 HOH HOH . L 7 HOH A 19 3819 3803 HOH HOH . L 7 HOH A 20 3820 3808 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . H 5 -4.062 -1.067 25.008 1 131.64 ? C9 OLC 2407 A 1 HETATM 2 C C8 OLC . . . H 5 -2.715 -0.461 25.321 1 132.15 ? C8 OLC 2407 A 1 HETATM 3 C C24 OLC . . . H 5 -2.883 12.082 27.146 1 148.92 ? C24 OLC 2407 A 1 HETATM 4 C C7 OLC . . . H 5 -2.872 0.583 26.419 1 132.75 ? C7 OLC 2407 A 1 HETATM 5 C C6 OLC . . . H 5 -2.604 1.979 25.871 1 131.64 ? C6 OLC 2407 A 1 HETATM 6 C C5 OLC . . . H 5 -3.076 3.062 26.837 1 130.6 ? C5 OLC 2407 A 1 HETATM 7 C C4 OLC . . . H 5 -3.641 4.268 26.092 1 131.84 ? C4 OLC 2407 A 1 HETATM 8 C C3 OLC . . . H 5 -2.531 5.08 25.432 1 134.13 ? C3 OLC 2407 A 1 HETATM 9 C C2 OLC . . . H 5 -2.963 6.515 25.149 1 137.38 ? C2 OLC 2407 A 1 HETATM 10 C C21 OLC . . . H 5 -2.1 9.737 27.079 1 144.93 ? C21 OLC 2407 A 1 HETATM 11 C C1 OLC . . . H 5 -2.506 7.43 26.26 1 139.83 ? C1 OLC 2407 A 1 HETATM 12 C C22 OLC . . . H 5 -1.805 11.152 26.604 1 147.86 ? C22 OLC 2407 A 1 HETATM 13 O O19 OLC . . . H 5 -2.416 7.008 27.406 1 139.84 ? O19 OLC 2407 A 1 HETATM 14 O O25 OLC . . . H 5 -2.503 13.446 26.927 1 151.57 ? O25 OLC 2407 A 1 HETATM 15 O O23 OLC . . . H 5 -0.536 11.565 27.121 1 150.7 ? O23 OLC 2407 A 1 HETATM 16 O O20 OLC . . . H 5 -2.175 8.824 25.982 1 142.2 ? O20 OLC 2407 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #