data_8A2W # _model_server_result.job_id DNd4RRADjygPiaNFSwMLvQ _model_server_result.datetime_utc '2024-10-15 15:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 8A2W # _exptl.entry_id 8A2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A2W _cell.length_a 40.356 _cell.length_b 43.191 _cell.length_c 133.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8A2W _atom_sites.fract_transf_matrix[1][1] 0.024779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1001 1001 FMN FMN . D 2 FMN B 1 1001 1001 FMN FMN . E 3 HOH A 1 1101 18 HOH HOH . E 3 HOH A 2 1102 25 HOH HOH . E 3 HOH A 3 1103 18 HOH HOH . E 3 HOH A 4 1104 14 HOH HOH . E 3 HOH A 5 1105 30 HOH HOH . E 3 HOH A 6 1106 60 HOH HOH . E 3 HOH A 7 1107 24 HOH HOH . E 3 HOH A 8 1108 62 HOH HOH . E 3 HOH A 9 1109 28 HOH HOH . E 3 HOH A 10 1110 12 HOH HOH . E 3 HOH A 11 1111 22 HOH HOH . E 3 HOH A 12 1112 29 HOH HOH . E 3 HOH A 13 1113 31 HOH HOH . E 3 HOH A 14 1114 29 HOH HOH . E 3 HOH A 15 1115 20 HOH HOH . E 3 HOH A 16 1116 1 HOH HOH . E 3 HOH A 17 1117 2 HOH HOH . E 3 HOH A 18 1118 17 HOH HOH . E 3 HOH A 19 1119 77 HOH HOH . E 3 HOH A 20 1120 13 HOH HOH . E 3 HOH A 21 1121 6 HOH HOH . E 3 HOH A 22 1122 10 HOH HOH . E 3 HOH A 23 1123 3 HOH HOH . E 3 HOH A 24 1124 19 HOH HOH . E 3 HOH A 25 1125 16 HOH HOH . E 3 HOH A 26 1126 10 HOH HOH . E 3 HOH A 27 1127 36 HOH HOH . E 3 HOH A 28 1128 5 HOH HOH . E 3 HOH A 29 1129 33 HOH HOH . E 3 HOH A 30 1130 1 HOH HOH . E 3 HOH A 31 1131 19 HOH HOH . E 3 HOH A 32 1132 4 HOH HOH . E 3 HOH A 33 1133 50 HOH HOH . E 3 HOH A 34 1134 65 HOH HOH . E 3 HOH A 35 1135 34 HOH HOH . E 3 HOH A 36 1136 15 HOH HOH . E 3 HOH A 37 1137 4 HOH HOH . E 3 HOH A 38 1138 48 HOH HOH . E 3 HOH A 39 1139 17 HOH HOH . E 3 HOH A 40 1140 37 HOH HOH . E 3 HOH A 41 1141 42 HOH HOH . E 3 HOH A 42 1142 53 HOH HOH . E 3 HOH A 43 1143 76 HOH HOH . E 3 HOH A 44 1144 16 HOH HOH . E 3 HOH A 45 1145 26 HOH HOH . E 3 HOH A 46 1146 45 HOH HOH . E 3 HOH A 47 1147 41 HOH HOH . E 3 HOH A 48 1148 44 HOH HOH . E 3 HOH A 49 1149 46 HOH HOH . E 3 HOH A 50 1150 8 HOH HOH . E 3 HOH A 51 1151 66 HOH HOH . E 3 HOH A 52 1152 52 HOH HOH . E 3 HOH A 53 1153 35 HOH HOH . F 3 HOH B 1 1101 78 HOH HOH . F 3 HOH B 2 1102 9 HOH HOH . F 3 HOH B 3 1103 32 HOH HOH . F 3 HOH B 4 1104 25 HOH HOH . F 3 HOH B 5 1105 39 HOH HOH . F 3 HOH B 6 1106 54 HOH HOH . F 3 HOH B 7 1107 61 HOH HOH . F 3 HOH B 8 1108 23 HOH HOH . F 3 HOH B 9 1109 13 HOH HOH . F 3 HOH B 10 1110 20 HOH HOH . F 3 HOH B 11 1111 14 HOH HOH . F 3 HOH B 12 1112 5 HOH HOH . F 3 HOH B 13 1113 21 HOH HOH . F 3 HOH B 14 1114 51 HOH HOH . F 3 HOH B 15 1115 43 HOH HOH . F 3 HOH B 16 1116 40 HOH HOH . F 3 HOH B 17 1117 27 HOH HOH . F 3 HOH B 18 1118 11 HOH HOH . F 3 HOH B 19 1119 21 HOH HOH . F 3 HOH B 20 1120 28 HOH HOH . F 3 HOH B 21 1121 22 HOH HOH . F 3 HOH B 22 1122 23 HOH HOH . F 3 HOH B 23 1123 3 HOH HOH . F 3 HOH B 24 1124 2 HOH HOH . F 3 HOH B 25 1125 49 HOH HOH . F 3 HOH B 26 1126 11 HOH HOH . F 3 HOH B 27 1127 15 HOH HOH . F 3 HOH B 28 1128 7 HOH HOH . F 3 HOH B 29 1129 12 HOH HOH . F 3 HOH B 30 1130 9 HOH HOH . F 3 HOH B 31 1131 24 HOH HOH . F 3 HOH B 32 1132 7 HOH HOH . F 3 HOH B 33 1133 6 HOH HOH . F 3 HOH B 34 1134 64 HOH HOH . F 3 HOH B 35 1135 57 HOH HOH . F 3 HOH B 36 1136 27 HOH HOH . F 3 HOH B 37 1137 69 HOH HOH . F 3 HOH B 38 1138 79 HOH HOH . F 3 HOH B 39 1139 68 HOH HOH . F 3 HOH B 40 1140 75 HOH HOH . F 3 HOH B 41 1141 59 HOH HOH . F 3 HOH B 42 1142 72 HOH HOH . F 3 HOH B 43 1143 71 HOH HOH . F 3 HOH B 44 1144 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 8.992 8.29 28.68 1 30.24 ? N1 FMN 1001 B 1 HETATM 2 C C2 FMN . . . D 2 8.794 9.094 29.784 1 32.6 ? C2 FMN 1001 B 1 HETATM 3 O O2 FMN . . . D 2 7.908 9.949 29.772 1 30.1 ? O2 FMN 1001 B 1 HETATM 4 N N3 FMN . . . D 2 9.583 8.942 30.906 1 30.34 ? N3 FMN 1001 B 1 HETATM 5 C C4 FMN . . . D 2 10.576 7.987 30.929 1 30.99 ? C4 FMN 1001 B 1 HETATM 6 O O4 FMN . . . D 2 11.284 7.846 31.926 1 30.89 ? O4 FMN 1001 B 1 HETATM 7 C C4A FMN . . . D 2 10.78 7.18 29.821 1 24.15 ? C4A FMN 1001 B 1 HETATM 8 N N5 FMN . . . D 2 11.773 6.227 29.856 1 19.74 ? N5 FMN 1001 B 1 HETATM 9 C C5A FMN . . . D 2 11.984 5.422 28.759 1 26.31 ? C5A FMN 1001 B 1 HETATM 10 C C6 FMN . . . D 2 12.993 4.469 28.81 1 25.52 ? C6 FMN 1001 B 1 HETATM 11 C C7 FMN . . . D 2 13.227 3.643 27.718 1 26.61 ? C7 FMN 1001 B 1 HETATM 12 C C7M FMN . . . D 2 14.32 2.618 27.795 1 23.14 ? C7M FMN 1001 B 1 HETATM 13 C C8 FMN . . . D 2 12.439 3.775 26.575 1 22.34 ? C8 FMN 1001 B 1 HETATM 14 C C8M FMN . . . D 2 12.676 2.905 25.377 1 24.1 ? C8M FMN 1001 B 1 HETATM 15 C C9 FMN . . . D 2 11.433 4.734 26.532 1 21.27 ? C9 FMN 1001 B 1 HETATM 16 C C9A FMN . . . D 2 11.195 5.565 27.623 1 25.3 ? C9A FMN 1001 B 1 HETATM 17 N N10 FMN . . . D 2 10.182 6.517 27.596 1 29.03 ? N10 FMN 1001 B 1 HETATM 18 C C10 FMN . . . D 2 9.987 7.332 28.692 1 25.28 ? C10 FMN 1001 B 1 HETATM 19 C C1' FMN . . . D 2 9.324 6.729 26.381 1 32.96 ? C1' FMN 1001 B 1 HETATM 20 C C2' FMN . . . D 2 8.051 5.898 26.314 1 35.36 ? C2' FMN 1001 B 1 HETATM 21 O O2' FMN . . . D 2 8.317 4.606 26.79 1 38.41 ? O2' FMN 1001 B 1 HETATM 22 C C3' FMN . . . D 2 7.553 5.848 24.869 1 34.92 ? C3' FMN 1001 B 1 HETATM 23 O O3' FMN . . . D 2 8.57 5.37 24.012 1 32.5 ? O3' FMN 1001 B 1 HETATM 24 C C4' FMN . . . D 2 7.102 7.212 24.355 1 32.79 ? C4' FMN 1001 B 1 HETATM 25 O O4' FMN . . . D 2 5.966 7.596 25.101 1 34 ? O4' FMN 1001 B 1 HETATM 26 C C5' FMN . . . D 2 6.727 7.183 22.879 1 33.35 ? C5' FMN 1001 B 1 HETATM 27 O O5' FMN . . . D 2 5.999 5.997 22.689 1 35.62 ? O5' FMN 1001 B 1 HETATM 28 P P FMN . . . D 2 4.398 6.019 22.516 1 43.5 ? P FMN 1001 B 1 HETATM 29 O O1P FMN . . . D 2 3.981 4.707 21.893 1 44.76 ? O1P FMN 1001 B 1 HETATM 30 O O2P FMN . . . D 2 3.724 6.184 23.857 1 40.51 ? O2P FMN 1001 B 1 HETATM 31 O O3P FMN . . . D 2 4.003 7.165 21.618 1 44.37 ? O3P FMN 1001 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #