data_8A2X # _model_server_result.job_id Neq-Xij3DAu2t6AUaicH0Q _model_server_result.datetime_utc '2024-11-22 10:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8A2X # _exptl.entry_id 8A2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 692.552 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A2X _cell.length_a 111.009 _cell.length_b 111.009 _cell.length_c 35.625 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 F2 N10 O7 P2 S2' _chem_comp.formula_weight 692.552 _chem_comp.id KZA _chem_comp.mon_nstd_flag . _chem_comp.name 9-[(1~{R},3~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]purin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S36 P35 KZA sing 171 n n O36 P35 KZA doub 172 n n P35 O35 KZA sing 173 n n P35 O23 KZA sing 174 n n C36 C31 KZA sing 175 n n C36 C34 KZA sing 176 n n O35 C35 KZA sing 177 n n C18 N17 KZA doub 178 n y C18 N19 KZA sing 179 n y N17 C15 KZA sing 180 n y C35 C34 KZA sing 181 n n N19 C31 KZA sing 182 n n N19 C14 KZA sing 183 n y C15 C16 KZA doub 184 n y C15 C14 KZA sing 185 n y N16 C16 KZA sing 186 n n C31 C32 KZA sing 187 n n C34 C33 KZA sing 188 n n C16 N11 KZA sing 189 n y C14 N13 KZA doub 190 n y O23 C23 KZA sing 191 n n N11 C12 KZA doub 192 n y N13 C12 KZA sing 193 n y F22 C22 KZA sing 194 n n C32 C33 KZA sing 195 n n C32 F32 KZA sing 196 n n C33 O33 KZA sing 197 n n C23 C22 KZA sing 198 n n C23 C24 KZA sing 199 n n C22 C21 KZA sing 200 n n C2 N3 KZA doub 201 n y C2 N1 KZA sing 202 n y N3 C4 KZA sing 203 n y N1 C6 KZA doub 204 n y O33 P25 KZA sing 205 n n C4 C5 KZA doub 206 n y C4 N9 KZA sing 207 n y C24 C25 KZA sing 208 n n C24 O24 KZA sing 209 n n C6 C5 KZA sing 210 n y C6 N6 KZA sing 211 n n C21 N9 KZA sing 212 n n C21 O24 KZA sing 213 n n C5 N7 KZA sing 214 n y N9 C8 KZA sing 215 n y C25 O25 KZA sing 216 n n O25 P25 KZA sing 217 n n C8 N7 KZA doub 218 n y P25 O26 KZA doub 219 n n P25 S26 KZA sing 220 n n C2 H1 KZA sing 221 n n N16 H2 KZA sing 222 n n N16 H3 KZA sing 223 n n C18 H4 KZA sing 224 n n C21 H5 KZA sing 225 n n C22 H6 KZA sing 226 n n C23 H7 KZA sing 227 n n C24 H8 KZA sing 228 n n C25 H9 KZA sing 229 n n C25 H10 KZA sing 230 n n C12 H11 KZA sing 231 n n C31 H12 KZA sing 232 n n C32 H13 KZA sing 233 n n C33 H14 KZA sing 234 n n C34 H15 KZA sing 235 n n C35 H16 KZA sing 236 n n C35 H17 KZA sing 237 n n C36 H18 KZA sing 238 n n C36 H19 KZA sing 239 n n C8 H20 KZA sing 240 n n N6 H21 KZA sing 241 n n N6 H22 KZA sing 242 n n S26 H23 KZA sing 243 n n S36 H24 KZA sing 244 n n # _atom_sites.entry_id 8A2X _atom_sites.fract_transf_matrix[1][1] 0.009008 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KZA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id KZA _pdbx_nonpoly_scheme.auth_mon_id 185 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 KZA . . . B 2 34.281 41.211 0.312 0.5 40.66 ? C2 KZA 401 A 1 HETATM 2 C C4 KZA . . . B 2 34.182 39.192 1.267 0.5 32.9 ? C4 KZA 401 A 1 HETATM 3 C C5 KZA . . . B 2 35.493 39.241 1.675 0.5 36.23 ? C5 KZA 401 A 1 HETATM 4 C C6 KZA . . . B 2 36.192 40.402 1.336 0.5 51.12 ? C6 KZA 401 A 1 HETATM 5 N N16 KZA . . . B 2 40.559 37.539 -1.549 0.5 46.67 ? N16 KZA 401 A 1 HETATM 6 C C15 KZA . . . B 2 39.262 35.543 -1.591 0.5 36.04 ? C15 KZA 401 A 1 HETATM 7 C C18 KZA . . . B 2 37.358 34.812 -2.196 0.5 38.5 ? C18 KZA 401 A 1 HETATM 8 C C14 KZA . . . B 2 39.252 34.207 -1.263 0.5 33.77 ? C14 KZA 401 A 1 HETATM 9 C C21 KZA . . . B 2 32.361 37.46 1.487 0.5 37.35 ? C21 KZA 401 A 1 HETATM 10 C C22 KZA . . . B 2 32.09 37.082 0.024 0.5 39.93 ? C22 KZA 401 A 1 HETATM 11 C C23 KZA . . . B 2 32.572 35.63 -0.023 0.5 34.59 ? C23 KZA 401 A 1 HETATM 12 C C24 KZA . . . B 2 32.034 35.123 1.317 0.5 37 ? C24 KZA 401 A 1 HETATM 13 C C25 KZA . . . B 2 32.676 33.881 1.871 0.5 30.38 ? C25 KZA 401 A 1 HETATM 14 C C12 KZA . . . B 2 41.321 34.277 -0.423 0.5 40.66 ? C12 KZA 401 A 1 HETATM 15 C C16 KZA . . . B 2 40.434 36.235 -1.276 0.5 49.71 ? C16 KZA 401 A 1 HETATM 16 C C31 KZA . . . B 2 37.534 32.355 -1.502 0.5 37.54 ? C31 KZA 401 A 1 HETATM 17 C C32 KZA . . . B 2 37.124 32.042 -0.059 0.5 39.91 ? C32 KZA 401 A 1 HETATM 18 C C33 KZA . . . B 2 35.692 32.557 -0.039 0.5 35.93 ? C33 KZA 401 A 1 HETATM 19 C C34 KZA . . . B 2 35.119 31.945 -1.321 0.5 36.8 ? C34 KZA 401 A 1 HETATM 20 C C35 KZA . . . B 2 33.837 32.571 -1.829 0.5 32.05 ? C35 KZA 401 A 1 HETATM 21 C C36 KZA . . . B 2 36.274 32.056 -2.342 0.5 38.1 ? C36 KZA 401 A 1 HETATM 22 C C8 KZA . . . B 2 34.745 37.365 2.347 0.5 38.66 ? C8 KZA 401 A 1 HETATM 23 F F22 KZA . . . B 2 30.724 37.159 -0.248 0.5 36.09 ? F22 KZA 401 A 1 HETATM 24 F F32 KZA . . . B 2 37.163 30.669 0.167 0.5 35.8 ? F32 KZA 401 A 1 HETATM 25 N N1 KZA . . . B 2 35.567 41.384 0.65 0.5 58.87 ? N1 KZA 401 A 1 HETATM 26 N N11 KZA . . . B 2 41.461 35.584 -0.689 0.5 59.88 ? N11 KZA 401 A 1 HETATM 27 N N13 KZA . . . B 2 40.244 33.519 -0.682 0.5 35.32 ? N13 KZA 401 A 1 HETATM 28 N N17 KZA . . . B 2 38.069 35.92 -2.179 0.5 36.81 ? N17 KZA 401 A 1 HETATM 29 N N19 KZA . . . B 2 38.037 33.731 -1.673 0.5 42.15 ? N19 KZA 401 A 1 HETATM 30 N N3 KZA . . . B 2 33.52 40.141 0.586 0.5 35.09 ? N3 KZA 401 A 1 HETATM 31 N N6 KZA . . . B 2 37.474 40.561 1.68 0.5 46.88 ? N6 KZA 401 A 1 HETATM 32 N N7 KZA . . . B 2 35.845 38.088 2.355 0.5 37.16 ? N7 KZA 401 A 1 HETATM 33 N N9 KZA . . . B 2 33.697 37.994 1.718 0.5 41.99 ? N9 KZA 401 A 1 HETATM 34 O O23 KZA . . . B 2 32.034 34.951 -1.145 0.5 52.61 ? O23 KZA 401 A 1 HETATM 35 O O24 KZA . . . B 2 32.221 36.248 2.227 0.5 37.56 ? O24 KZA 401 A 1 HETATM 36 O O25 KZA . . . B 2 34.041 34.148 2.211 0.5 28.98 ? O25 KZA 401 A 1 HETATM 37 O O26 KZA . . . B 2 36.393 33.482 2.65 0.5 34.83 ? O26 KZA 401 A 1 HETATM 38 O O33 KZA . . . B 2 35.007 32.086 1.114 0.5 51.79 ? O33 KZA 401 A 1 HETATM 39 O O35 KZA . . . B 2 34.066 33.926 -2.274 0.5 28.57 ? O35 KZA 401 A 1 HETATM 40 O O36 KZA . . . B 2 33.396 36.275 -2.763 0.5 35.29 ? O36 KZA 401 A 1 HETATM 41 P P25 KZA . . . B 2 35.048 32.946 2.448 0.5 32.99 ? P25 KZA 401 A 1 HETATM 42 P P35 KZA . . . B 2 32.858 34.938 -2.502 0.5 33.16 ? P35 KZA 401 A 1 HETATM 43 S S26 KZA . . . B 2 34.369 31.779 4.003 0.5 51.64 ? S26 KZA 401 A 1 HETATM 44 S S36 KZA . . . B 2 31.635 34.226 -3.995 0.5 50.49 ? S36 KZA 401 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 646 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #