data_8A3Q # _model_server_result.job_id PgmHtwfkiYEXf1Qx9kPmVA _model_server_result.datetime_utc '2024-11-22 22:43:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 8A3Q # _exptl.entry_id 8A3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8A3Q _cell.length_a 63.438 _cell.length_b 79.018 _cell.length_c 49.875 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 44 A CYS 42 1_555 A SG CYS 60 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 142 A CYS 136 1_555 A SG CYS 209 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 173 A CYS 168 1_555 A SG CYS 188 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 199 A CYS 191 1_555 A SG CYS 227 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 21 A ASN 21 1_555 D C1 NAG . A NAG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 262 n n C1 O1 NAG sing 263 n n C1 O5 NAG sing 264 n n C1 H1 NAG sing 265 n n C2 C3 NAG sing 266 n n C2 N2 NAG sing 267 n n C2 H2 NAG sing 268 n n C3 C4 NAG sing 269 n n C3 O3 NAG sing 270 n n C3 H3 NAG sing 271 n n C4 C5 NAG sing 272 n n C4 O4 NAG sing 273 n n C4 H4 NAG sing 274 n n C5 C6 NAG sing 275 n n C5 O5 NAG sing 276 n n C5 H5 NAG sing 277 n n C6 O6 NAG sing 278 n n C6 H61 NAG sing 279 n n C6 H62 NAG sing 280 n n C7 C8 NAG sing 281 n n C7 N2 NAG sing 282 n n C7 O7 NAG doub 283 n n C8 H81 NAG sing 284 n n C8 H82 NAG sing 285 n n C8 H83 NAG sing 286 n n N2 HN2 NAG sing 287 n n O1 HO1 NAG sing 288 n n O3 HO3 NAG sing 289 n n O4 HO4 NAG sing 290 n n O6 HO6 NAG sing 291 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8A3Q _atom_sites.fract_transf_matrix[1][1] 0.015763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNL A 1 301 1 UNL UNL . C 3 MES A 1 302 1 MES MES . D 4 NAG A 1 303 1 NAG NAG . E 5 HOH A 1 401 62 HOH HOH . E 5 HOH A 2 402 21 HOH HOH . E 5 HOH A 3 403 72 HOH HOH . E 5 HOH A 4 404 45 HOH HOH . E 5 HOH A 5 405 82 HOH HOH . E 5 HOH A 6 406 5 HOH HOH . E 5 HOH A 7 407 18 HOH HOH . E 5 HOH A 8 408 23 HOH HOH . E 5 HOH A 9 409 13 HOH HOH . E 5 HOH A 10 410 37 HOH HOH . E 5 HOH A 11 411 22 HOH HOH . E 5 HOH A 12 412 1 HOH HOH . E 5 HOH A 13 413 24 HOH HOH . E 5 HOH A 14 414 67 HOH HOH . E 5 HOH A 15 415 78 HOH HOH . E 5 HOH A 16 416 15 HOH HOH . E 5 HOH A 17 417 30 HOH HOH . E 5 HOH A 18 418 34 HOH HOH . E 5 HOH A 19 419 27 HOH HOH . E 5 HOH A 20 420 12 HOH HOH . E 5 HOH A 21 421 70 HOH HOH . E 5 HOH A 22 422 28 HOH HOH . E 5 HOH A 23 423 7 HOH HOH . E 5 HOH A 24 424 3 HOH HOH . E 5 HOH A 25 425 4 HOH HOH . E 5 HOH A 26 426 48 HOH HOH . E 5 HOH A 27 427 17 HOH HOH . E 5 HOH A 28 428 80 HOH HOH . E 5 HOH A 29 429 42 HOH HOH . E 5 HOH A 30 430 51 HOH HOH . E 5 HOH A 31 431 14 HOH HOH . E 5 HOH A 32 432 71 HOH HOH . E 5 HOH A 33 433 56 HOH HOH . E 5 HOH A 34 434 47 HOH HOH . E 5 HOH A 35 435 9 HOH HOH . E 5 HOH A 36 436 11 HOH HOH . E 5 HOH A 37 437 36 HOH HOH . E 5 HOH A 38 438 6 HOH HOH . E 5 HOH A 39 439 33 HOH HOH . E 5 HOH A 40 440 20 HOH HOH . E 5 HOH A 41 441 65 HOH HOH . E 5 HOH A 42 442 29 HOH HOH . E 5 HOH A 43 443 79 HOH HOH . E 5 HOH A 44 444 54 HOH HOH . E 5 HOH A 45 445 57 HOH HOH . E 5 HOH A 46 446 26 HOH HOH . E 5 HOH A 47 447 75 HOH HOH . E 5 HOH A 48 448 59 HOH HOH . E 5 HOH A 49 449 61 HOH HOH . E 5 HOH A 50 450 19 HOH HOH . E 5 HOH A 51 451 43 HOH HOH . E 5 HOH A 52 452 77 HOH HOH . E 5 HOH A 53 453 81 HOH HOH . E 5 HOH A 54 454 41 HOH HOH . E 5 HOH A 55 455 10 HOH HOH . E 5 HOH A 56 456 55 HOH HOH . E 5 HOH A 57 457 73 HOH HOH . E 5 HOH A 58 458 2 HOH HOH . E 5 HOH A 59 459 66 HOH HOH . E 5 HOH A 60 460 8 HOH HOH . E 5 HOH A 61 461 74 HOH HOH . E 5 HOH A 62 462 40 HOH HOH . E 5 HOH A 63 463 58 HOH HOH . E 5 HOH A 64 464 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 22.479 153.213 118.286 1 84.45 ? C1 NAG 303 A 1 HETATM 2 C C2 NAG . . . D 4 22.903 152.795 119.693 1 84.98 ? C2 NAG 303 A 1 HETATM 3 C C3 NAG . . . D 4 24.222 152.025 119.827 1 85.05 ? C3 NAG 303 A 1 HETATM 4 C C4 NAG . . . D 4 24.868 151.72 118.474 1 85.11 ? C4 NAG 303 A 1 HETATM 5 C C5 NAG . . . D 4 23.847 151.309 117.407 1 85.06 ? C5 NAG 303 A 1 HETATM 6 C C6 NAG . . . D 4 23.499 149.833 117.446 1 85.08 ? C6 NAG 303 A 1 HETATM 7 C C7 NAG . . . D 4 22.39 153.863 121.844 1 85.48 ? C7 NAG 303 A 1 HETATM 8 C C8 NAG . . . D 4 22.47 155.126 122.65 1 85.47 ? C8 NAG 303 A 1 HETATM 9 N N2 NAG . . . D 4 22.88 153.931 120.601 1 85.32 ? N2 NAG 303 A 1 HETATM 10 O O3 NAG . . . D 4 24.024 150.827 120.57 1 85.03 ? O3 NAG 303 A 1 HETATM 11 O O4 NAG . . . D 4 25.652 152.819 118.019 1 85.08 ? O4 NAG 303 A 1 HETATM 12 O O5 NAG . . . D 4 22.594 152.035 117.48 1 84.82 ? O5 NAG 303 A 1 HETATM 13 O O6 NAG . . . D 4 22.435 149.501 116.556 1 85.07 ? O6 NAG 303 A 1 HETATM 14 O O7 NAG . . . D 4 21.903 152.83 122.295 1 85.49 ? O7 NAG 303 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #