data_8A48 # _model_server_result.job_id Z6meU5StCPSbNA7CoczFIw _model_server_result.datetime_utc '2025-09-04 17:33:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8A48 # _exptl.entry_id 8A48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8A48 _cell.length_a 106.78 _cell.length_b 106.78 _cell.length_c 104.011 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 2 7 1 FUC NAG C1 O1 . O6 HO6 . sing 7 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 10 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 11 ? 3 6 3 MAN BMA C1 O1 . O6 HO6 . sing 12 ? 3 7 6 NAG MAN C1 O1 . O2 HO2 . sing 13 ? 3 8 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 449 NAG 2 n C NAG 2 C 2 NAG A 450 NAG 2 n C BMA 3 C 3 BMA A 451 BMA 2 n C MAN 4 C 4 MAN A 457 MAN 2 n C NAG 5 C 5 NAG A 458 NAG 2 n C MAN 6 C 6 MAN A 452 MAN 2 n C FUC 7 C 7 FUC A 456 FUC 3 n D NAG 1 D 1 NAG B 446 NAG 3 n D NAG 2 D 2 NAG B 447 NAG 3 n D BMA 3 D 3 BMA B 448 BMA 3 n D MAN 4 D 4 MAN B 449 MAN 3 n D NAG 5 D 5 NAG B 451 NAG 3 n D MAN 6 D 6 MAN B 450 MAN 3 n D NAG 7 D 7 NAG B 452 NAG 3 n D FUC 8 D 8 FUC B 453 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 261 1_555 A SG CYS 101 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 147 A CYS 367 1_555 A SG CYS 205 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 B SG CYS 41 B CYS 261 1_555 B SG CYS 101 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 B SG CYS 147 B CYS 367 1_555 B SG CYS 205 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 77 A ASN 297 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 B ND2 ASN 77 B ASN 297 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale6 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale11 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale13 D O6 BMA . D BMA 3 1_555 D C1 MAN . D MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 D O2 MAN . D MAN 4 1_555 D C1 NAG . D NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale15 D O2 MAN . D MAN 6 1_555 D C1 NAG . D NAG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 391 n n S O2 SO4 doub 392 n n S O3 SO4 sing 393 n n S O4 SO4 sing 394 n n # _atom_sites.entry_id 8A48 _atom_sites.fract_transf_matrix[1][1] 0.009365 _atom_sites.fract_transf_matrix[1][2] 0.005407 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 A 1 501 2 SO4 SO4 . F 5 HOH A 1 601 10 HOH HOH . F 5 HOH A 2 602 4 HOH HOH . F 5 HOH A 3 603 5 HOH HOH . F 5 HOH A 4 604 3 HOH HOH . F 5 HOH A 5 605 9 HOH HOH . F 5 HOH A 6 606 32 HOH HOH . F 5 HOH A 7 607 21 HOH HOH . F 5 HOH A 8 608 2 HOH HOH . F 5 HOH A 9 609 33 HOH HOH . G 5 HOH B 1 501 6 HOH HOH . G 5 HOH B 2 502 26 HOH HOH . G 5 HOH B 3 503 31 HOH HOH . G 5 HOH B 4 504 8 HOH HOH . G 5 HOH B 5 505 17 HOH HOH . G 5 HOH B 6 506 16 HOH HOH . G 5 HOH B 7 507 13 HOH HOH . G 5 HOH B 8 508 28 HOH HOH . G 5 HOH B 9 509 35 HOH HOH . G 5 HOH B 10 510 23 HOH HOH . G 5 HOH B 11 511 15 HOH HOH . G 5 HOH B 12 512 14 HOH HOH . G 5 HOH B 13 513 7 HOH HOH . G 5 HOH B 14 514 29 HOH HOH . G 5 HOH B 15 515 12 HOH HOH . G 5 HOH B 16 516 30 HOH HOH . G 5 HOH B 17 517 11 HOH HOH . G 5 HOH B 18 518 18 HOH HOH . G 5 HOH B 19 519 19 HOH HOH . G 5 HOH B 20 520 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 4 69.247 -26.169 10.327 1 168.39 0 S SO4 501 A 1 HETATM 2 O O1 SO4 . . . E 4 68.942 -27.13 9.303 1 168.97 0 O1 SO4 501 A 1 HETATM 3 O O2 SO4 . . . E 4 70.605 -25.711 10.172 1 161.55 0 O2 SO4 501 A 1 HETATM 4 O O3 SO4 . . . E 4 69.091 -26.783 11.618 1 167.08 0 O3 SO4 501 A 1 HETATM 5 O O4 SO4 . . . E 4 68.344 -25.055 10.217 1 165.76 0 O4 SO4 501 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #