data_8A4B
#
_model_server_result.job_id            0mfUy0ONyM7UrEXSnVqirw 
_model_server_result.datetime_utc      '2025-08-31 14:59:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8a4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    8A4B 
#
_exptl.entry_id    8A4B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.47 
_cell.angle_gamma         90 
_cell.entry_id            8A4B 
_cell.length_a            59.84 
_cell.length_b            107.96 
_cell.length_c            91.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8A4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 8 C CYS 21 1_555 C SG CYS 205 C CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 B OG1 THR 20 B THR 36 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 B OG1 THR 38 B THR 54 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc3 E O3G GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc4 E O2B GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc5 F MG MG . B MG 202 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc6 F MG MG . B MG 202 1_555 J O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc7 D OG1 THR 20 D THR 36 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc8 D OG1 THR 38 D THR 54 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc9 G O2G GTP . D GTP 201 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? 
metalc ? metalc10 G O2B GTP . D GTP 201 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc11 H MG MG . D MG 202 1_555 L O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc12 H MG MG . D MG 202 1_555 L O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 129 n n 
PG O2G GTP sing 130 n n 
PG O3G GTP sing 131 n n 
PG O3B GTP sing 132 n n 
O2G HOG2 GTP sing 133 n n 
O3G HOG3 GTP sing 134 n n 
O3B PB GTP sing 135 n n 
PB O1B GTP doub 136 n n 
PB O2B GTP sing 137 n n 
PB O3A GTP sing 138 n n 
O2B HOB2 GTP sing 139 n n 
O3A PA GTP sing 140 n n 
PA O1A GTP doub 141 n n 
PA O2A GTP sing 142 n n 
PA O5' GTP sing 143 n n 
O2A HOA2 GTP sing 144 n n 
O5' C5' GTP sing 145 n n 
C5' C4' GTP sing 146 n n 
C5' H5' GTP sing 147 n n 
C5' "H5''" GTP sing 148 n n 
C4' O4' GTP sing 149 n n 
C4' C3' GTP sing 150 n n 
C4' H4' GTP sing 151 n n 
O4' C1' GTP sing 152 n n 
C3' O3' GTP sing 153 n n 
C3' C2' GTP sing 154 n n 
C3' H3' GTP sing 155 n n 
O3' HO3' GTP sing 156 n n 
C2' O2' GTP sing 157 n n 
C2' C1' GTP sing 158 n n 
C2' H2' GTP sing 159 n n 
O2' HO2' GTP sing 160 n n 
C1' N9 GTP sing 161 n n 
C1' H1' GTP sing 162 n n 
N9 C8 GTP sing 163 n y 
N9 C4 GTP sing 164 n y 
C8 N7 GTP doub 165 n y 
C8 H8 GTP sing 166 n n 
N7 C5 GTP sing 167 n y 
C5 C6 GTP sing 168 n n 
C5 C4 GTP doub 169 n y 
C6 O6 GTP doub 170 n n 
C6 N1 GTP sing 171 n n 
N1 C2 GTP sing 172 n n 
N1 HN1 GTP sing 173 n n 
C2 N2 GTP sing 174 n n 
C2 N3 GTP doub 175 n n 
N2 HN21 GTP sing 176 n n 
N2 HN22 GTP sing 177 n n 
N3 C4 GTP sing 178 n n 
#
_atom_sites.entry_id                     8A4B 
_atom_sites.fract_transf_matrix[1][1]    0.016711 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004941 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009263 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GTP B 1 201 2 GTP GTP . 
F 4 MG B 1 202 2 MG MG . 
G 3 GTP D 1 201 1 GTP GTP . 
H 4 MG D 1 202 1 MG MG . 
I 5 HOH A 1 301 17 HOH HOH . 
I 5 HOH A 2 302 8 HOH HOH . 
I 5 HOH A 3 303 5 HOH HOH . 
J 5 HOH B 1 301 21 HOH HOH . 
J 5 HOH B 2 302 10 HOH HOH . 
J 5 HOH B 3 303 9 HOH HOH . 
J 5 HOH B 4 304 12 HOH HOH . 
J 5 HOH B 5 305 6 HOH HOH . 
J 5 HOH B 6 306 18 HOH HOH . 
J 5 HOH B 7 307 3 HOH HOH . 
J 5 HOH B 8 308 15 HOH HOH . 
J 5 HOH B 9 309 20 HOH HOH . 
J 5 HOH B 10 310 4 HOH HOH . 
K 5 HOH C 1 301 13 HOH HOH . 
K 5 HOH C 2 302 2 HOH HOH . 
K 5 HOH C 3 303 16 HOH HOH . 
K 5 HOH C 4 304 7 HOH HOH . 
L 5 HOH D 1 301 11 HOH HOH . 
L 5 HOH D 2 302 22 HOH HOH . 
L 5 HOH D 3 303 19 HOH HOH . 
L 5 HOH D 4 304 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . E 3 4.568 7.249 -14.173 1 88.93 ? PG GTP 201 B 1 
HETATM 2 O O1G GTP . . . E 3 4.257 8.051 -12.925 1 65.78 ? O1G GTP 201 B 1 
HETATM 3 O O2G GTP . . . E 3 4.449 8.176 -15.366 1 71.29 ? O2G GTP 201 B 1 
HETATM 4 O O3G GTP . . . E 3 3.573 6.121 -14.32 1 78.14 ? O3G GTP 201 B 1 
HETATM 5 O O3B GTP . . . E 3 6.078 6.658 -14.048 1 80.82 ? O3B GTP 201 B 1 
HETATM 6 P PB GTP . . . E 3 6.504 5.46 -13.039 1 65.18 ? PB GTP 201 B 1 
HETATM 7 O O1B GTP . . . E 3 6.976 6.016 -11.714 1 62.5 ? O1B GTP 201 B 1 
HETATM 8 O O2B GTP . . . E 3 5.363 4.494 -12.831 1 69.24 ? O2B GTP 201 B 1 
HETATM 9 O O3A GTP . . . E 3 7.747 4.725 -13.761 1 69.75 ? O3A GTP 201 B 1 
HETATM 10 P PA GTP . . . E 3 7.649 3.169 -14.154 1 70.79 ? PA GTP 201 B 1 
HETATM 11 O O1A GTP . . . E 3 7.449 2.358 -12.899 1 65.52 ? O1A GTP 201 B 1 
HETATM 12 O O2A GTP . . . E 3 6.517 2.92 -15.118 1 72.73 ? O2A GTP 201 B 1 
HETATM 13 O O5' GTP . . . E 3 9.042 2.823 -14.88 1 61.35 ? O5' GTP 201 B 1 
HETATM 14 C C5' GTP . . . E 3 10.027 3.787 -15.172 1 65.58 ? C5' GTP 201 B 1 
HETATM 15 C C4' GTP . . . E 3 11.025 3.195 -16.167 1 69.65 ? C4' GTP 201 B 1 
HETATM 16 O O4' GTP . . . E 3 12.194 2.832 -15.467 1 71.87 ? O4' GTP 201 B 1 
HETATM 17 C C3' GTP . . . E 3 10.509 1.927 -16.813 1 75.16 ? C3' GTP 201 B 1 
HETATM 18 O O3' GTP . . . E 3 11.018 1.878 -18.122 1 73.19 ? O3' GTP 201 B 1 
HETATM 19 C C2' GTP . . . E 3 11.145 0.8 -16.037 1 71.43 ? C2' GTP 201 B 1 
HETATM 20 O O2' GTP . . . E 3 11.455 -0.258 -16.912 1 80.86 ? O2' GTP 201 B 1 
HETATM 21 C C1' GTP . . . E 3 12.398 1.433 -15.466 1 60.58 ? C1' GTP 201 B 1 
HETATM 22 N N9 GTP . . . E 3 12.642 1.052 -14.067 1 60.07 ? N9 GTP 201 B 1 
HETATM 23 C C8 GTP . . . E 3 11.763 1.105 -13.015 1 56.97 ? C8 GTP 201 B 1 
HETATM 24 N N7 GTP . . . E 3 12.412 0.691 -11.899 1 54.12 ? N7 GTP 201 B 1 
HETATM 25 C C5 GTP . . . E 3 13.69 0.384 -12.222 1 59.79 ? C5 GTP 201 B 1 
HETATM 26 C C6 GTP . . . E 3 14.775 -0.084 -11.484 1 62.09 ? C6 GTP 201 B 1 
HETATM 27 O O6 GTP . . . E 3 14.667 -0.302 -10.277 1 62.74 ? O6 GTP 201 B 1 
HETATM 28 N N1 GTP . . . E 3 15.984 -0.306 -12.115 1 59.49 ? N1 GTP 201 B 1 
HETATM 29 C C2 GTP . . . E 3 16.111 -0.064 -13.469 1 58.68 ? C2 GTP 201 B 1 
HETATM 30 N N2 GTP . . . E 3 17.27 -0.271 -14.087 1 61.25 ? N2 GTP 201 B 1 
HETATM 31 N N3 GTP . . . E 3 15.032 0.395 -14.192 1 63.54 ? N3 GTP 201 B 1 
HETATM 32 C C4 GTP . . . E 3 13.845 0.616 -13.581 1 63.48 ? C4 GTP 201 B 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#