data_8A4B # _model_server_result.job_id J1MUx5f6RUghbLlHidaGtA _model_server_result.datetime_utc '2025-08-31 10:34:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8a4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 8A4B # _exptl.entry_id 8A4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.47 _cell.angle_gamma 90 _cell.entry_id 8A4B _cell.length_a 59.84 _cell.length_b 107.96 _cell.length_c 91.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8A4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 8 C CYS 21 1_555 C SG CYS 205 C CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 B OG1 THR 20 B THR 36 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 B OG1 THR 38 B THR 54 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 E O3G GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc4 E O2B GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc5 F MG MG . B MG 202 1_555 J O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 F MG MG . B MG 202 1_555 J O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc7 D OG1 THR 20 D THR 36 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc8 D OG1 THR 38 D THR 54 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 G O2G GTP . D GTP 201 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? metalc ? metalc10 G O2B GTP . D GTP 201 1_555 H MG MG . D MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc11 H MG MG . D MG 202 1_555 L O HOH . D HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc12 H MG MG . D MG 202 1_555 L O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 8A4B _atom_sites.fract_transf_matrix[1][1] 0.016711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GTP B 1 201 2 GTP GTP . F 4 MG B 1 202 2 MG MG . G 3 GTP D 1 201 1 GTP GTP . H 4 MG D 1 202 1 MG MG . I 5 HOH A 1 301 17 HOH HOH . I 5 HOH A 2 302 8 HOH HOH . I 5 HOH A 3 303 5 HOH HOH . J 5 HOH B 1 301 21 HOH HOH . J 5 HOH B 2 302 10 HOH HOH . J 5 HOH B 3 303 9 HOH HOH . J 5 HOH B 4 304 12 HOH HOH . J 5 HOH B 5 305 6 HOH HOH . J 5 HOH B 6 306 18 HOH HOH . J 5 HOH B 7 307 3 HOH HOH . J 5 HOH B 8 308 15 HOH HOH . J 5 HOH B 9 309 20 HOH HOH . J 5 HOH B 10 310 4 HOH HOH . K 5 HOH C 1 301 13 HOH HOH . K 5 HOH C 2 302 2 HOH HOH . K 5 HOH C 3 303 16 HOH HOH . K 5 HOH C 4 304 7 HOH HOH . L 5 HOH D 1 301 11 HOH HOH . L 5 HOH D 2 302 22 HOH HOH . L 5 HOH D 3 303 19 HOH HOH . L 5 HOH D 4 304 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 3 -34.354 -26.411 -14.019 1 107.04 ? PG GTP 201 D 1 HETATM 2 O O1G GTP . . . G 3 -34.277 -27.051 -15.383 1 89.22 ? O1G GTP 201 D 1 HETATM 3 O O2G GTP . . . G 3 -33.464 -25.194 -14.009 1 120.53 ? O2G GTP 201 D 1 HETATM 4 O O3G GTP . . . G 3 -33.891 -27.397 -12.973 1 98.23 ? O3G GTP 201 D 1 HETATM 5 O O3B GTP . . . G 3 -35.897 -26.028 -13.721 1 87.35 ? O3B GTP 201 D 1 HETATM 6 P PB GTP . . . G 3 -36.397 -24.606 -13.135 1 66.69 ? PB GTP 201 D 1 HETATM 7 O O1B GTP . . . G 3 -37.554 -24.844 -12.199 1 64.01 ? O1B GTP 201 D 1 HETATM 8 O O2B GTP . . . G 3 -35.302 -23.85 -12.421 1 71.09 ? O2B GTP 201 D 1 HETATM 9 O O3A GTP . . . G 3 -36.912 -23.838 -14.456 1 75.57 ? O3A GTP 201 D 1 HETATM 10 P PA GTP . . . G 3 -37.429 -22.319 -14.381 1 73.87 ? PA GTP 201 D 1 HETATM 11 O O1A GTP . . . G 3 -37.856 -21.984 -12.98 1 66.18 ? O1A GTP 201 D 1 HETATM 12 O O2A GTP . . . G 3 -36.337 -21.378 -14.82 1 71.09 ? O2A GTP 201 D 1 HETATM 13 O O5' GTP . . . G 3 -38.667 -22.205 -15.4 1 65.47 ? O5' GTP 201 D 1 HETATM 14 C C5' GTP . . . G 3 -39.905 -22.828 -15.165 1 65.48 ? C5' GTP 201 D 1 HETATM 15 C C4' GTP . . . G 3 -40.873 -22.378 -16.256 1 68.04 ? C4' GTP 201 D 1 HETATM 16 O O4' GTP . . . G 3 -42.082 -21.986 -15.647 1 67.59 ? O4' GTP 201 D 1 HETATM 17 C C3' GTP . . . G 3 -40.357 -21.155 -16.98 1 71.4 ? C3' GTP 201 D 1 HETATM 18 O O3' GTP . . . G 3 -40.883 -21.194 -18.285 1 73 ? O3' GTP 201 D 1 HETATM 19 C C2' GTP . . . G 3 -40.966 -19.994 -16.225 1 70.42 ? C2' GTP 201 D 1 HETATM 20 O O2' GTP . . . G 3 -41.243 -18.921 -17.094 1 76.48 ? O2' GTP 201 D 1 HETATM 21 C C1' GTP . . . G 3 -42.24 -20.578 -15.646 1 64.38 ? C1' GTP 201 D 1 HETATM 22 N N9 GTP . . . G 3 -42.441 -20.215 -14.235 1 60.9 ? N9 GTP 201 D 1 HETATM 23 C C8 GTP . . . G 3 -41.513 -20.289 -13.229 1 56.45 ? C8 GTP 201 D 1 HETATM 24 N N7 GTP . . . G 3 -42.103 -19.904 -12.074 1 53.81 ? N7 GTP 201 D 1 HETATM 25 C C5 GTP . . . G 3 -43.396 -19.592 -12.324 1 59.15 ? C5 GTP 201 D 1 HETATM 26 C C6 GTP . . . G 3 -44.437 -19.141 -11.513 1 60.81 ? C6 GTP 201 D 1 HETATM 27 O O6 GTP . . . G 3 -44.258 -18.952 -10.309 1 60.26 ? O6 GTP 201 D 1 HETATM 28 N N1 GTP . . . G 3 -45.681 -18.905 -12.069 1 56.99 ? N1 GTP 201 D 1 HETATM 29 C C2 GTP . . . G 3 -45.876 -19.116 -13.419 1 58.04 ? C2 GTP 201 D 1 HETATM 30 N N2 GTP . . . G 3 -47.066 -18.9 -13.966 1 56.62 ? N2 GTP 201 D 1 HETATM 31 N N3 GTP . . . G 3 -44.839 -19.555 -14.214 1 61.55 ? N3 GTP 201 D 1 HETATM 32 C C4 GTP . . . G 3 -43.62 -19.791 -13.679 1 61.9 ? C4 GTP 201 D 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 498 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #